Wall clock time and date at job start Mon Mar 30 2020 01:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99463 * 2 1 4 4 H 1.48502 * 109.47198 * 270.00146 * 3 2 1 5 5 H 1.48502 * 109.47031 * 30.00237 * 3 2 1 6 6 H 1.48497 * 109.46935 * 150.00267 * 3 2 1 7 7 C 1.37867 * 120.00566 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99902 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00147 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.47006 * 179.97438 * 9 7 2 11 11 O 1.45193 * 109.47002 * 179.97438 * 10 9 7 12 12 C 1.34226 * 117.00312 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99627 * 0.02562 * 12 11 10 14 14 C 1.50704 * 120.00309 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.47077 * 180.02562 * 14 12 11 16 16 H 1.08997 * 110.81112 * 51.68249 * 15 14 12 17 17 C 1.54707 * 110.74938 * 175.00035 * 15 14 12 18 18 C 1.51642 * 101.92398 * 143.60562 * 17 15 14 19 19 C 1.37742 * 132.16609 * 164.59302 * 18 17 15 20 20 C 1.38354 * 119.97688 * 180.36228 * 19 18 17 21 21 C 1.38288 * 119.76222 * 359.97438 * 20 19 18 22 22 C 1.37928 * 120.35483 * 359.85315 * 21 20 19 23 23 C 1.38871 * 107.04445 * 344.61651 * 18 17 15 24 24 O 1.36136 * 111.23830 * 358.92966 * 23 18 17 25 25 H 0.96997 * 120.00742 * 359.97438 * 1 2 3 26 26 H 1.08989 * 109.47103 * 59.99752 * 9 7 2 27 27 H 1.08999 * 109.46610 * 299.99254 * 9 7 2 28 28 H 1.09005 * 109.46770 * 59.99878 * 10 9 7 29 29 H 1.08994 * 109.47183 * 300.00233 * 10 9 7 30 30 H 1.08991 * 109.47197 * 60.00029 * 14 12 11 31 31 H 1.09004 * 109.46837 * 299.99975 * 14 12 11 32 32 H 1.09001 * 110.93932 * 261.76082 * 17 15 14 33 33 H 1.08996 * 110.93774 * 25.44629 * 17 15 14 34 34 H 1.08002 * 120.01629 * 0.34144 * 19 18 17 35 35 H 1.07994 * 120.11736 * 179.97438 * 20 19 18 36 36 H 1.08009 * 119.81725 * 179.83211 * 21 20 19 37 37 H 1.07997 * 119.88082 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4463 2.6527 0.7001 6 1 3.5465 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1938 -0.0011 10 6 4.0217 -2.6363 -0.0010 11 8 5.4736 -2.6362 -0.0022 12 6 6.0832 -3.8321 -0.0017 13 8 5.4252 -4.8455 -0.0008 14 6 7.5881 -3.9109 -0.0022 15 6 8.0221 -5.3780 -0.0022 16 1 7.5258 -5.9287 -0.8013 17 6 9.5595 -5.4949 -0.1288 18 6 9.8573 -6.6872 0.7596 19 6 10.9677 -7.4927 0.8847 20 6 10.9648 -8.5381 1.7909 21 6 9.8449 -8.7694 2.5685 22 6 8.7333 -7.9619 2.4474 23 6 8.7292 -6.9056 1.5395 24 8 7.7607 -5.9864 1.2741 25 1 -0.4851 0.8400 0.0004 26 1 3.8752 -0.6801 0.8887 27 1 3.8745 -0.6798 -0.8912 28 1 3.6580 -3.1503 -0.8908 29 1 3.6587 -3.1500 0.8892 30 1 7.9782 -3.4162 0.8872 31 1 7.9774 -3.4172 -0.8927 32 1 9.8513 -5.6949 -1.1598 33 1 10.0506 -4.5972 0.2464 34 1 11.8402 -7.3084 0.2754 35 1 11.8339 -9.1713 1.8905 36 1 9.8406 -9.5870 3.2743 37 1 7.8627 -8.1497 3.0583 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869634880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:37 Heat of formation + Delta-G solvation = -101.413983 kcal Electronic energy + Delta-G solvation = -20094.648131 eV Core-core repulsion = 16802.224966 eV Total energy + Delta-G solvation = -3292.423166 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.45902 -39.94055 -37.73128 -36.20720 -33.52638 -33.28666 -31.72504 -30.68594 -30.25837 -27.67946 -25.18205 -23.00088 -22.37497 -21.92198 -20.76258 -20.40632 -17.88143 -17.56855 -17.01393 -16.73180 -16.28227 -16.06561 -15.66760 -14.99218 -14.47913 -14.22603 -13.95350 -13.58731 -13.43557 -13.26983 -12.98961 -12.71081 -12.45300 -12.26646 -12.04330 -11.86058 -11.47352 -11.29018 -11.13619 -10.97105 -10.70359 -10.57887 -9.97972 -9.90681 -9.70514 -9.35248 -9.17167 -8.62933 -8.36719 -6.13238 -4.14559 1.01116 1.12699 2.49003 2.95055 3.02833 3.27196 3.34636 3.39036 3.45749 4.03632 4.24797 4.38034 4.51140 4.64353 4.73877 4.79265 4.93773 5.05525 5.14890 5.20168 5.22222 5.24270 5.35832 5.47452 5.59263 5.78541 5.96670 5.98040 6.05183 6.15020 6.20699 6.37638 6.44969 6.78587 6.99797 7.18630 7.21740 7.61890 8.11410 8.39391 8.88462 9.46169 10.99344 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.048328 B = 0.002785 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.237644 B =10052.684578 C =10349.349946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.083 3.917 11 O -0.362 6.362 12 C 0.455 3.545 13 O -0.505 6.505 14 C -0.114 4.114 15 C 0.094 3.906 16 H 0.099 0.901 17 C -0.105 4.105 18 C -0.179 4.179 19 C -0.070 4.070 20 C -0.154 4.154 21 C -0.085 4.085 22 C -0.140 4.140 23 C 0.112 3.888 24 O -0.289 6.289 25 H 0.266 0.734 26 H 0.028 0.972 27 H 0.024 0.976 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.116 0.884 31 H 0.126 0.874 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.280 -13.639 1.112 28.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.047 4.047 10 C 0.010 3.990 11 O -0.279 6.279 12 C 0.297 3.703 13 O -0.393 6.393 14 C -0.151 4.151 15 C 0.038 3.962 16 H 0.117 0.883 17 C -0.142 4.142 18 C -0.180 4.180 19 C -0.088 4.088 20 C -0.173 4.173 21 C -0.103 4.103 22 C -0.159 4.159 23 C 0.067 3.933 24 O -0.202 6.202 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.134 0.866 31 H 0.144 0.856 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 24.656 -13.715 1.234 28.241 hybrid contribution 0.214 0.838 -0.096 0.870 sum 24.870 -12.876 1.138 28.029 Atomic orbital electron populations 1.69893 1.06283 1.27216 1.50108 1.24941 0.94776 0.99196 0.94137 0.86741 0.80428 0.83261 0.78711 1.20066 1.21166 1.18761 1.20847 0.88291 0.95054 1.52364 0.90653 1.19627 0.97016 0.90177 0.97856 1.23387 0.72191 1.01562 1.01833 1.86466 1.26411 1.32091 1.82937 1.23238 0.91413 0.82340 0.73288 1.90682 1.67174 1.36528 1.44966 1.21507 0.90425 0.96051 1.07134 1.23172 0.94429 0.93010 0.85571 0.88309 1.21848 0.94759 0.96908 1.00657 1.20775 0.95477 0.99438 1.02272 1.20297 0.96610 0.94013 0.97890 1.21019 0.98983 0.99253 0.97998 1.20887 0.92324 0.98455 0.98610 1.20337 1.00321 0.94140 1.01092 1.19661 0.87654 0.90181 0.95848 1.86997 1.46971 1.49981 1.36276 0.92425 0.95384 0.95818 0.91707 0.91649 0.86618 0.85597 0.88591 0.88647 0.85843 0.85576 0.85210 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.96 55.43 0.77 -26.70 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.53 -15.11 9.66 -34.44 -0.33 -15.44 16 8 H 0.08 2.31 7.99 -52.48 -0.42 1.89 16 9 C -0.01 -0.23 4.42 -27.88 -0.12 -0.35 16 10 C 0.08 1.79 5.40 37.16 0.20 1.99 16 11 O -0.36 -6.82 10.22 -39.25 -0.40 -7.22 16 12 C 0.46 7.52 7.91 36.01 0.28 7.81 16 13 O -0.51 -9.95 15.43 -21.28 -0.33 -10.27 16 14 C -0.11 -1.22 5.50 -27.88 -0.15 -1.38 16 15 C 0.09 1.04 3.04 -25.83 -0.08 0.97 16 16 H 0.10 1.14 7.88 -51.93 -0.41 0.73 16 17 C -0.10 -0.85 6.65 -26.52 -0.18 -1.02 16 18 C -0.18 -1.80 6.27 -104.10 -0.65 -2.45 16 19 C -0.07 -0.58 10.03 -39.72 -0.40 -0.98 16 20 C -0.15 -1.20 10.07 -39.52 -0.40 -1.60 16 21 C -0.08 -0.72 10.02 -39.68 -0.40 -1.11 16 22 C -0.14 -1.51 10.06 -39.30 -0.40 -1.90 16 23 C 0.11 1.38 7.04 -38.96 -0.27 1.11 16 24 O -0.29 -4.09 10.52 -22.90 -0.24 -4.33 16 25 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 26 H 0.03 0.68 7.20 -51.94 -0.37 0.30 16 27 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 28 H 0.06 1.40 8.13 -51.93 -0.42 0.98 16 29 H 0.07 1.45 8.13 -51.93 -0.42 1.02 16 30 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.13 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.63 7.92 -51.93 -0.41 0.22 16 34 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 37 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 319.69 15.07 4.82 4.82 Total: -1.00 -34.03 319.69 -8.02 -42.05 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -4.98 Total: -2.73 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -2.99 Total: -12.38 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: 0.77 Total: -26.70 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.97 Total: -21.82 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.03 -8.02 -42.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869634880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.364 kcal (2) G-P(sol) polarization free energy of solvation -34.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds