Wall clock time and date at job start Mon Mar 30 2020 01:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99463 * 2 1 4 4 H 1.48502 * 109.47198 * 270.00146 * 3 2 1 5 5 H 1.48502 * 109.47031 * 30.00237 * 3 2 1 6 6 H 1.48497 * 109.46935 * 150.00267 * 3 2 1 7 7 C 1.37867 * 120.00566 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99902 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00147 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.47006 * 179.97438 * 9 7 2 11 11 O 1.45193 * 109.47002 * 179.97438 * 10 9 7 12 12 C 1.34226 * 117.00312 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99627 * 0.02562 * 12 11 10 14 14 C 1.50704 * 120.00309 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.47077 * 180.02562 * 14 12 11 16 16 H 1.08997 * 110.81112 * 51.68249 * 15 14 12 17 17 C 1.54707 * 110.74938 * 175.00035 * 15 14 12 18 18 C 1.51642 * 101.92398 * 143.60562 * 17 15 14 19 19 C 1.37742 * 132.16609 * 164.59302 * 18 17 15 20 20 C 1.38354 * 119.97688 * 180.36228 * 19 18 17 21 21 C 1.38288 * 119.76222 * 359.97438 * 20 19 18 22 22 C 1.37928 * 120.35483 * 359.85315 * 21 20 19 23 23 C 1.38871 * 107.04445 * 344.61651 * 18 17 15 24 24 O 1.36136 * 111.23830 * 358.92966 * 23 18 17 25 25 H 0.96997 * 120.00742 * 359.97438 * 1 2 3 26 26 H 1.08989 * 109.47103 * 59.99752 * 9 7 2 27 27 H 1.08999 * 109.46610 * 299.99254 * 9 7 2 28 28 H 1.09005 * 109.46770 * 59.99878 * 10 9 7 29 29 H 1.08994 * 109.47183 * 300.00233 * 10 9 7 30 30 H 1.08991 * 109.47197 * 60.00029 * 14 12 11 31 31 H 1.09004 * 109.46837 * 299.99975 * 14 12 11 32 32 H 1.09001 * 110.93932 * 261.76082 * 17 15 14 33 33 H 1.08996 * 110.93774 * 25.44629 * 17 15 14 34 34 H 1.08002 * 120.01629 * 0.34144 * 19 18 17 35 35 H 1.07994 * 120.11736 * 179.97438 * 20 19 18 36 36 H 1.08009 * 119.81725 * 179.83211 * 21 20 19 37 37 H 1.07997 * 119.88082 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4463 2.6527 0.7001 6 1 3.5465 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1938 -0.0011 10 6 4.0217 -2.6363 -0.0010 11 8 5.4736 -2.6362 -0.0022 12 6 6.0832 -3.8321 -0.0017 13 8 5.4252 -4.8455 -0.0008 14 6 7.5881 -3.9109 -0.0022 15 6 8.0221 -5.3780 -0.0022 16 1 7.5258 -5.9287 -0.8013 17 6 9.5595 -5.4949 -0.1288 18 6 9.8573 -6.6872 0.7596 19 6 10.9677 -7.4927 0.8847 20 6 10.9648 -8.5381 1.7909 21 6 9.8449 -8.7694 2.5685 22 6 8.7333 -7.9619 2.4474 23 6 8.7292 -6.9056 1.5395 24 8 7.7607 -5.9864 1.2741 25 1 -0.4851 0.8400 0.0004 26 1 3.8752 -0.6801 0.8887 27 1 3.8745 -0.6798 -0.8912 28 1 3.6580 -3.1503 -0.8908 29 1 3.6587 -3.1500 0.8892 30 1 7.9782 -3.4162 0.8872 31 1 7.9774 -3.4172 -0.8927 32 1 9.8513 -5.6949 -1.1598 33 1 10.0506 -4.5972 0.2464 34 1 11.8402 -7.3084 0.2754 35 1 11.8339 -9.1713 1.8905 36 1 9.8406 -9.5870 3.2743 37 1 7.8627 -8.1497 3.0583 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869634880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:36 Heat of formation + Delta-G solvation = -121.992087 kcal Electronic energy + Delta-G solvation = -20095.540465 eV Core-core repulsion = 16802.224966 eV Total energy + Delta-G solvation = -3293.315499 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.27839 -41.30590 -38.50747 -37.69143 -35.41479 -34.31132 -32.94375 -32.28178 -30.94731 -28.60929 -27.00177 -23.95419 -23.22649 -22.62280 -22.58218 -21.64825 -19.29464 -18.69351 -18.38369 -17.80651 -17.61075 -17.41921 -16.50927 -16.25883 -16.00462 -15.46554 -15.03127 -14.87017 -14.48970 -14.26237 -14.04878 -13.89973 -13.53119 -13.37866 -13.15719 -13.01230 -12.72031 -12.55369 -12.48215 -12.42890 -11.86849 -11.81952 -11.68636 -11.58058 -11.46386 -11.43043 -10.82581 -9.83466 -9.10761 -8.35716 -6.44596 0.34558 0.41836 1.17720 1.37552 1.39908 1.52660 1.67046 2.24452 2.33763 2.77530 2.98959 3.30788 3.44793 3.68749 3.84307 3.99013 4.10494 4.14588 4.18292 4.20748 4.34135 4.45336 4.53417 4.58354 4.60221 4.66978 4.87599 4.90546 5.03683 5.13138 5.26937 5.39852 5.47135 5.48753 5.55564 5.56433 5.74140 6.13763 6.25467 6.61431 6.70769 7.20606 8.80538 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.048328 B = 0.002785 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.237644 B =10052.684578 C =10349.349946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.010 3.990 3 Si 0.958 3.042 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.243 1.243 7 C -0.545 4.545 8 H 0.032 0.968 9 C -0.002 4.002 10 C 0.093 3.907 11 O -0.360 6.360 12 C 0.450 3.550 13 O -0.544 6.544 14 C -0.100 4.100 15 C 0.085 3.915 16 H 0.083 0.917 17 C -0.091 4.091 18 C -0.185 4.185 19 C -0.073 4.073 20 C -0.150 4.150 21 C -0.089 4.089 22 C -0.164 4.164 23 C 0.070 3.930 24 O -0.327 6.327 25 H 0.271 0.729 26 H 0.035 0.965 27 H 0.038 0.962 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.135 0.865 31 H 0.171 0.829 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.544 -12.667 0.538 32.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.166 1.166 7 C -0.583 4.583 8 H 0.050 0.950 9 C -0.040 4.040 10 C 0.020 3.980 11 O -0.277 6.277 12 C 0.294 3.706 13 O -0.434 6.434 14 C -0.137 4.137 15 C 0.029 3.971 16 H 0.101 0.899 17 C -0.128 4.128 18 C -0.186 4.186 19 C -0.091 4.091 20 C -0.168 4.168 21 C -0.106 4.106 22 C -0.183 4.183 23 C 0.025 3.975 24 O -0.242 6.242 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.153 0.847 31 H 0.188 0.812 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.171 0.829 35 H 0.175 0.825 36 H 0.171 0.829 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 28.949 -12.767 0.659 31.646 hybrid contribution -1.123 0.347 0.114 1.181 sum 27.826 -12.420 0.774 30.482 Atomic orbital electron populations 1.70045 1.08410 1.28699 1.51307 1.26003 0.95718 1.03755 0.93330 0.85554 0.79490 0.77359 0.79653 1.18534 1.20637 1.16643 1.21127 0.90844 0.93743 1.52592 0.94975 1.19459 0.94063 0.91853 0.98604 1.22913 0.74452 0.99836 1.00824 1.86457 1.24205 1.33615 1.83383 1.24512 0.93658 0.80892 0.71499 1.90675 1.68497 1.37554 1.46673 1.21736 0.85290 0.96632 1.09997 1.23314 0.96804 0.92609 0.84326 0.89883 1.21864 0.92001 0.97031 1.01891 1.21106 0.95169 1.00277 1.02020 1.20711 0.96930 0.93421 0.98014 1.21467 0.99415 0.99087 0.96811 1.21211 0.91801 0.98494 0.99124 1.20581 1.01248 0.94956 1.01531 1.20038 0.88590 0.91100 0.97753 1.86941 1.48517 1.51032 1.37692 0.92013 0.94650 0.94355 0.92493 0.93132 0.84740 0.81189 0.85980 0.86456 0.82876 0.82543 0.82917 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.35 13.96 21.44 0.30 -59.05 16 2 C 0.01 0.58 5.47 84.65 0.46 1.04 16 3 Si 0.96 43.48 27.47 68.60 1.88 45.37 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 7 C -0.55 -32.10 9.66 25.60 0.25 -31.85 16 8 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 9 C 0.00 -0.11 4.42 29.85 0.13 0.02 16 10 C 0.09 4.11 5.40 71.98 0.39 4.50 16 11 O -0.36 -13.22 10.22 -51.38 -0.53 -13.74 16 12 C 0.45 14.67 7.91 71.24 0.56 15.23 16 13 O -0.54 -22.12 15.43 24.38 0.38 -21.75 16 14 C -0.10 -1.91 5.50 29.85 0.16 -1.75 16 15 C 0.09 1.80 3.04 31.18 0.09 1.89 16 16 H 0.08 1.94 7.88 -2.39 -0.02 1.92 16 17 C -0.09 -1.20 6.65 30.73 0.20 -1.00 16 18 C -0.18 -3.37 6.27 -19.53 -0.12 -3.49 16 19 C -0.07 -0.99 10.03 22.18 0.22 -0.77 16 20 C -0.15 -1.91 10.07 22.31 0.22 -1.68 16 21 C -0.09 -1.38 10.02 22.21 0.22 -1.16 16 22 C -0.16 -3.65 10.06 22.45 0.23 -3.43 16 23 C 0.07 1.74 7.04 22.67 0.16 1.90 16 24 O -0.33 -9.53 10.52 -92.49 -0.97 -10.51 16 25 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 26 H 0.04 1.65 7.20 -2.39 -0.02 1.63 16 27 H 0.04 1.74 7.57 -2.39 -0.02 1.72 16 28 H 0.06 2.56 8.13 -2.38 -0.02 2.54 16 29 H 0.05 2.34 8.13 -2.39 -0.02 2.32 16 30 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.17 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.12 1.04 7.92 -2.39 -0.02 1.02 16 34 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 36 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 37 H 0.12 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -78.09 319.69 5.26 -72.83 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: 1.01 Total: 7.39 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 3.19 Total: -20.55 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: 0.30 Total: -59.05 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -1.12 Total: -46.00 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.37 kcal Total: -78.09 5.26 -72.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869634880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.162 kcal (2) G-P(sol) polarization free energy of solvation -78.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds