Wall clock time and date at job start Mon Mar 30 2020 01:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99971 * 2 1 4 4 H 1.48499 * 109.47071 * 239.99993 * 3 2 1 5 5 H 1.48502 * 109.47148 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47347 * 120.00040 * 3 2 1 7 7 C 1.37876 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99965 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00395 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47267 * 179.97438 * 9 7 2 11 11 O 1.45210 * 109.47160 * 179.97438 * 10 9 7 12 12 C 1.34224 * 116.99776 * 180.02562 * 11 10 9 13 13 O 1.20823 * 120.00217 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99671 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47321 * 180.02562 * 14 12 11 16 16 H 1.09006 * 110.66845 * 308.21708 * 15 14 12 17 17 C 1.54708 * 110.75226 * 185.00100 * 15 14 12 18 18 C 1.51649 * 101.92754 * 216.39329 * 17 15 14 19 19 C 1.37739 * 132.17341 * 195.53839 * 18 17 15 20 20 C 1.38351 * 119.97882 * 179.52272 * 19 18 17 21 21 C 1.38282 * 119.76539 * 0.02562 * 20 19 18 22 22 C 1.37928 * 120.35271 * 0.13779 * 21 20 19 23 23 C 1.38880 * 107.04032 * 15.36310 * 18 17 15 24 24 O 1.36134 * 111.23564 * 1.10098 * 23 18 17 25 25 H 0.97001 * 119.99993 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46763 * 59.99250 * 9 7 2 27 27 H 1.09004 * 109.47082 * 299.99834 * 9 7 2 28 28 H 1.08996 * 109.47155 * 60.00121 * 10 9 7 29 29 H 1.08994 * 109.47597 * 299.99669 * 10 9 7 30 30 H 1.09004 * 109.47530 * 59.99946 * 14 12 11 31 31 H 1.09007 * 109.47124 * 299.99893 * 14 12 11 32 32 H 1.08999 * 110.94356 * 98.23188 * 17 15 14 33 33 H 1.09002 * 110.93713 * 334.54661 * 17 15 14 34 34 H 1.08003 * 120.00948 * 359.55203 * 19 18 17 35 35 H 1.08001 * 120.11389 * 179.97438 * 20 19 18 36 36 H 1.08005 * 119.82304 * 180.15935 * 21 20 19 37 37 H 1.08007 * 119.87843 * 180.27498 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5192 -4.9196 0.0011 12 6 2.2503 -6.0453 0.0018 13 8 3.4569 -5.9820 0.0023 14 6 1.5662 -7.3880 0.0018 15 6 2.6199 -8.4973 0.0032 16 1 3.3430 -8.3421 -0.7976 17 6 1.9525 -9.8874 -0.1228 18 6 2.8358 -10.7408 0.7667 19 6 2.9799 -12.1050 0.8912 20 6 3.8876 -12.6244 1.7970 21 6 4.6469 -11.7696 2.5749 22 6 4.5018 -10.4033 2.4542 23 6 3.5889 -9.8724 1.5461 24 8 3.2768 -8.5743 1.2798 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 2.8719 -3.6043 0.8905 29 1 2.8719 -3.6044 -0.8894 30 1 0.9437 -7.4788 -0.8884 31 1 0.9430 -7.4782 0.8916 32 1 1.9801 -10.2408 -1.1535 33 1 0.9293 -9.8636 0.2521 34 1 2.3849 -12.7689 0.2817 35 1 4.0021 -13.6937 1.8968 36 1 5.3576 -12.1741 3.2804 37 1 5.1020 -9.7427 3.0624 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869634882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:38 Heat of formation + Delta-G solvation = -105.349308 kcal Electronic energy + Delta-G solvation = -20046.375398 eV Core-core repulsion = 16753.781584 eV Total energy + Delta-G solvation = -3292.593814 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.41993 -39.84767 -37.69521 -36.09571 -33.48672 -33.31016 -31.66798 -30.25227 -30.20695 -27.58035 -25.00385 -22.99646 -22.36817 -21.88964 -21.01255 -20.30408 -17.83538 -17.45667 -16.93926 -16.48052 -16.06333 -15.95691 -15.62868 -14.96752 -14.47647 -14.43487 -13.88335 -13.49320 -13.40156 -13.16166 -12.79642 -12.56178 -12.33854 -12.17886 -12.00902 -11.80363 -11.20519 -11.11431 -11.05501 -10.93241 -10.73011 -10.69866 -10.21648 -9.63799 -9.60778 -9.31082 -9.14590 -8.44074 -8.33730 -6.10349 -4.14753 1.03742 1.15308 2.57124 3.00858 3.10001 3.30367 3.34215 3.37986 3.48627 4.07851 4.28364 4.40494 4.55408 4.68105 4.79982 4.81494 4.98073 5.10112 5.19092 5.26112 5.28595 5.30539 5.41853 5.51570 5.63806 5.81843 6.07641 6.09708 6.11581 6.17904 6.23043 6.40666 6.64262 6.99324 7.03956 7.55769 7.62260 7.86730 8.18609 8.26642 8.90575 9.49577 11.01150 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.050578 B = 0.002662 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.468693 B =10514.028507 C =10863.614128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.358 6.358 12 C 0.454 3.546 13 O -0.510 6.510 14 C -0.114 4.114 15 C 0.095 3.905 16 H 0.099 0.901 17 C -0.105 4.105 18 C -0.179 4.179 19 C -0.070 4.070 20 C -0.155 4.155 21 C -0.085 4.085 22 C -0.141 4.141 23 C 0.113 3.887 24 O -0.288 6.288 25 H 0.264 0.736 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.726 -25.691 1.085 25.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.275 6.275 12 C 0.297 3.703 13 O -0.398 6.398 14 C -0.152 4.152 15 C 0.039 3.961 16 H 0.116 0.884 17 C -0.142 4.142 18 C -0.179 4.179 19 C -0.088 4.088 20 C -0.173 4.173 21 C -0.103 4.103 22 C -0.159 4.159 23 C 0.067 3.933 24 O -0.202 6.202 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.144 0.856 31 H 0.134 0.866 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.955 -25.269 1.203 25.605 hybrid contribution 0.491 0.961 -0.074 1.082 sum 4.446 -24.308 1.129 24.737 Atomic orbital electron populations 1.69964 1.06092 1.27103 1.49733 1.24984 0.94927 0.99389 0.94854 0.86523 0.79477 0.82444 0.78799 1.20066 1.21114 1.20049 1.20947 0.93155 0.90147 1.52278 0.92312 1.19166 0.94186 0.89042 0.98849 1.23641 0.96353 0.78723 1.00966 1.86512 1.42434 1.15852 1.82663 1.23248 0.86631 0.87244 0.73198 1.90661 1.15661 1.88203 1.45309 1.21510 0.98181 0.88337 1.07164 1.23166 0.93669 0.93804 0.85500 0.88358 1.21855 0.99459 0.92261 1.00621 1.20787 1.00382 0.94504 1.02262 1.20295 0.97803 0.92810 0.97897 1.21012 0.98454 0.99791 0.98027 1.20878 0.98758 0.92049 0.98616 1.20330 0.99135 0.95343 1.01128 1.19668 0.94022 0.83827 0.95805 1.86997 1.74152 1.22785 1.36268 0.92650 0.95373 0.95351 0.92300 0.92318 0.85581 0.86623 0.88601 0.88607 0.85844 0.85594 0.85240 0.85352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.65 5.35 -27.89 -0.15 0.50 16 10 C 0.08 1.71 5.40 37.15 0.20 1.91 16 11 O -0.36 -7.18 10.22 -39.24 -0.40 -7.58 16 12 C 0.45 7.88 7.91 36.00 0.28 8.16 16 13 O -0.51 -10.31 15.43 -21.27 -0.33 -10.64 16 14 C -0.11 -1.31 5.50 -27.89 -0.15 -1.47 16 15 C 0.09 1.10 3.04 -25.83 -0.08 1.02 16 16 H 0.10 1.18 7.88 -51.93 -0.41 0.77 16 17 C -0.11 -0.89 6.65 -26.52 -0.18 -1.07 16 18 C -0.18 -1.85 6.27 -104.10 -0.65 -2.51 16 19 C -0.07 -0.60 10.03 -39.72 -0.40 -1.00 16 20 C -0.15 -1.24 10.07 -39.52 -0.40 -1.64 16 21 C -0.08 -0.74 10.02 -39.68 -0.40 -1.13 16 22 C -0.14 -1.55 10.06 -39.31 -0.40 -1.94 16 23 C 0.11 1.42 7.04 -38.95 -0.27 1.14 16 24 O -0.29 -4.21 10.52 -22.85 -0.24 -4.45 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 29 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 30 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.12 1.20 8.14 -51.92 -0.42 0.77 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.68 7.92 -51.93 -0.41 0.27 16 34 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 35 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 37 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 LS Contribution 323.29 15.07 4.87 4.87 Total: -1.00 -33.55 323.29 -8.39 -41.94 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -5.01 Total: -3.24 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -3.00 Total: -11.67 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.77 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.97 Total: -22.67 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.55 -8.39 -41.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869634882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.404 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds