Wall clock time and date at job start Mon Mar 30 2020 01:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99971 * 2 1 4 4 H 1.48499 * 109.47071 * 239.99993 * 3 2 1 5 5 H 1.48502 * 109.47148 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47347 * 120.00040 * 3 2 1 7 7 C 1.37876 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99965 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00395 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47267 * 179.97438 * 9 7 2 11 11 O 1.45210 * 109.47160 * 179.97438 * 10 9 7 12 12 C 1.34224 * 116.99776 * 180.02562 * 11 10 9 13 13 O 1.20823 * 120.00217 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99671 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47321 * 180.02562 * 14 12 11 16 16 H 1.09006 * 110.66845 * 308.21708 * 15 14 12 17 17 C 1.54708 * 110.75226 * 185.00100 * 15 14 12 18 18 C 1.51649 * 101.92754 * 216.39329 * 17 15 14 19 19 C 1.37739 * 132.17341 * 195.53839 * 18 17 15 20 20 C 1.38351 * 119.97882 * 179.52272 * 19 18 17 21 21 C 1.38282 * 119.76539 * 0.02562 * 20 19 18 22 22 C 1.37928 * 120.35271 * 0.13779 * 21 20 19 23 23 C 1.38880 * 107.04032 * 15.36310 * 18 17 15 24 24 O 1.36134 * 111.23564 * 1.10098 * 23 18 17 25 25 H 0.97001 * 119.99993 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46763 * 59.99250 * 9 7 2 27 27 H 1.09004 * 109.47082 * 299.99834 * 9 7 2 28 28 H 1.08996 * 109.47155 * 60.00121 * 10 9 7 29 29 H 1.08994 * 109.47597 * 299.99669 * 10 9 7 30 30 H 1.09004 * 109.47530 * 59.99946 * 14 12 11 31 31 H 1.09007 * 109.47124 * 299.99893 * 14 12 11 32 32 H 1.08999 * 110.94356 * 98.23188 * 17 15 14 33 33 H 1.09002 * 110.93713 * 334.54661 * 17 15 14 34 34 H 1.08003 * 120.00948 * 359.55203 * 19 18 17 35 35 H 1.08001 * 120.11389 * 179.97438 * 20 19 18 36 36 H 1.08005 * 119.82304 * 180.15935 * 21 20 19 37 37 H 1.08007 * 119.87843 * 180.27498 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5192 -4.9196 0.0011 12 6 2.2503 -6.0453 0.0018 13 8 3.4569 -5.9820 0.0023 14 6 1.5662 -7.3880 0.0018 15 6 2.6199 -8.4973 0.0032 16 1 3.3430 -8.3421 -0.7976 17 6 1.9525 -9.8874 -0.1228 18 6 2.8358 -10.7408 0.7667 19 6 2.9799 -12.1050 0.8912 20 6 3.8876 -12.6244 1.7970 21 6 4.6469 -11.7696 2.5749 22 6 4.5018 -10.4033 2.4542 23 6 3.5889 -9.8724 1.5461 24 8 3.2768 -8.5743 1.2798 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 2.8719 -3.6043 0.8905 29 1 2.8719 -3.6044 -0.8894 30 1 0.9437 -7.4788 -0.8884 31 1 0.9430 -7.4782 0.8916 32 1 1.9801 -10.2408 -1.1535 33 1 0.9293 -9.8636 0.2521 34 1 2.3849 -12.7689 0.2817 35 1 4.0021 -13.6937 1.8968 36 1 5.3576 -12.1741 3.2804 37 1 5.1020 -9.7427 3.0624 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869634882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:38 Heat of formation + Delta-G solvation = -124.621440 kcal Electronic energy + Delta-G solvation = -20047.211100 eV Core-core repulsion = 16753.781584 eV Total energy + Delta-G solvation = -3293.429516 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.27572 -41.29057 -38.50214 -37.66235 -35.47064 -34.31063 -32.71092 -32.06660 -30.94494 -28.53454 -26.92918 -24.04807 -23.28475 -22.80053 -22.59842 -21.62614 -19.08152 -18.62597 -18.18586 -17.79073 -17.62222 -17.39589 -16.62183 -16.35622 -15.97426 -15.40921 -15.00479 -14.52422 -14.40784 -14.33314 -14.04907 -13.88618 -13.47557 -13.31360 -13.05972 -12.97007 -12.71225 -12.59684 -12.58155 -12.52588 -11.90461 -11.86465 -11.67272 -11.54611 -11.49806 -11.33085 -10.62643 -9.83233 -9.10595 -8.28788 -6.42256 0.34778 0.42154 1.17972 1.39433 1.43313 1.51003 1.71414 2.24218 2.38786 2.77777 3.05335 3.30845 3.46235 3.70295 3.84442 3.98800 4.11140 4.18763 4.20938 4.24473 4.35116 4.45066 4.53021 4.58305 4.66091 4.68146 4.87309 4.90266 5.13228 5.24713 5.40181 5.44288 5.47535 5.53976 5.56278 5.72560 5.74656 6.04645 6.25614 6.68960 6.73773 7.27434 8.83623 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.050578 B = 0.002662 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.468693 B =10514.028507 C =10863.614128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.553 4.553 8 H 0.063 0.937 9 C 0.032 3.968 10 C 0.091 3.909 11 O -0.365 6.365 12 C 0.450 3.550 13 O -0.543 6.543 14 C -0.102 4.102 15 C 0.087 3.913 16 H 0.085 0.915 17 C -0.092 4.092 18 C -0.185 4.185 19 C -0.073 4.073 20 C -0.150 4.150 21 C -0.088 4.088 22 C -0.164 4.164 23 C 0.070 3.930 24 O -0.326 6.326 25 H 0.269 0.731 26 H 0.009 0.991 27 H 0.006 0.994 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.168 0.832 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.606 -27.604 0.582 27.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.591 4.591 8 H 0.081 0.919 9 C -0.006 4.006 10 C 0.017 3.983 11 O -0.282 6.282 12 C 0.295 3.705 13 O -0.433 6.433 14 C -0.139 4.139 15 C 0.031 3.969 16 H 0.103 0.897 17 C -0.129 4.129 18 C -0.186 4.186 19 C -0.091 4.091 20 C -0.168 4.168 21 C -0.106 4.106 22 C -0.182 4.182 23 C 0.025 3.975 24 O -0.241 6.241 25 H 0.077 0.923 26 H 0.028 0.972 27 H 0.024 0.976 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.186 0.814 31 H 0.150 0.850 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.171 0.829 35 H 0.175 0.825 36 H 0.172 0.828 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.836 -27.214 0.700 27.492 hybrid contribution 0.550 1.420 0.117 1.527 sum 4.386 -25.794 0.817 26.177 Atomic orbital electron populations 1.70082 1.07767 1.28403 1.50216 1.25963 0.95877 1.03392 0.94003 0.85376 0.78215 0.77431 0.79290 1.19009 1.20277 1.19193 1.21345 0.93642 0.91356 1.52769 0.91897 1.18973 0.94296 0.90523 0.96769 1.23127 0.95070 0.79346 1.00715 1.86508 1.42585 1.15837 1.83245 1.24472 0.86551 0.88007 0.71519 1.90647 1.17336 1.88524 1.46781 1.21733 0.98212 0.84122 1.09794 1.23285 0.93561 0.95637 0.84375 0.89714 1.21866 0.99597 0.89491 1.01916 1.21101 1.00272 0.95186 1.02035 1.20708 0.97908 0.92411 0.98055 1.21466 0.97214 1.01283 0.96788 1.21214 0.99217 0.91057 0.99097 1.20582 0.99527 0.96641 1.01489 1.20047 0.96001 0.83679 0.97762 1.86938 1.75155 1.24441 1.37613 0.92250 0.97212 0.97574 0.92841 0.92189 0.81441 0.85010 0.85958 0.86636 0.82915 0.82504 0.82837 0.86112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.55 -31.99 9.11 25.60 0.23 -31.76 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.03 1.73 5.35 29.85 0.16 1.89 16 10 C 0.09 4.23 5.40 71.98 0.39 4.62 16 11 O -0.37 -14.83 10.22 -51.36 -0.52 -15.35 16 12 C 0.45 15.67 7.91 71.24 0.56 16.24 16 13 O -0.54 -22.58 15.43 24.38 0.38 -22.21 16 14 C -0.10 -2.19 5.50 29.85 0.16 -2.03 16 15 C 0.09 1.96 3.04 31.18 0.09 2.05 16 16 H 0.08 2.06 7.88 -2.38 -0.02 2.04 16 17 C -0.09 -1.33 6.65 30.73 0.20 -1.13 16 18 C -0.19 -3.53 6.27 -19.53 -0.12 -3.65 16 19 C -0.07 -1.04 10.03 22.18 0.22 -0.82 16 20 C -0.15 -1.96 10.07 22.31 0.22 -1.74 16 21 C -0.09 -1.40 10.02 22.21 0.22 -1.18 16 22 C -0.16 -3.69 10.06 22.45 0.23 -3.46 16 23 C 0.07 1.79 7.04 22.68 0.16 1.95 16 24 O -0.33 -9.83 10.52 -92.51 -0.97 -10.81 16 25 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 26 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 28 H 0.05 2.52 8.13 -2.39 -0.02 2.50 16 29 H 0.06 2.75 8.13 -2.39 -0.02 2.73 16 30 H 0.17 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.13 2.48 8.14 -2.38 -0.02 2.46 16 32 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.12 1.22 7.92 -2.39 -0.02 1.20 16 34 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 35 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 36 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 37 H 0.12 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -75.37 323.29 5.45 -69.91 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: 1.06 Total: 6.02 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: 3.20 Total: -18.17 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.28 Total: -55.54 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -1.12 Total: -48.36 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -75.37 5.45 -69.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869634882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.707 kcal (2) G-P(sol) polarization free energy of solvation -75.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds