Wall clock time and date at job start Mon Mar 30 2020 01:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 119.99876 * 2 1 4 4 H 1.48500 * 109.47509 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47179 * 300.00122 * 3 2 1 6 6 H 1.48497 * 109.47195 * 60.00158 * 3 2 1 7 7 C 1.38814 * 120.00507 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00517 * 180.02562 * 7 2 1 9 9 O 1.34851 * 119.99521 * 359.97438 * 7 2 1 10 10 C 1.34740 * 117.00121 * 179.97438 * 9 7 2 11 11 O 1.21503 * 119.99540 * 0.02562 * 10 9 7 12 12 C 1.47656 * 120.00148 * 180.02562 * 10 9 7 13 13 C 1.39672 * 120.15156 * 180.02562 * 12 10 9 14 14 C 1.37931 * 119.84063 * 180.02562 * 13 12 10 15 15 C 1.38379 * 120.15995 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.84710 * 179.97438 * 15 14 13 17 17 C 1.53179 * 109.54458 * 120.17827 * 16 15 14 18 18 C 1.53280 * 109.06328 * 176.85180 * 17 16 15 19 19 O 1.42901 * 109.46155 * 302.44168 * 18 17 16 20 20 C 1.42903 * 114.09356 * 61.15994 * 19 18 17 21 21 C 1.53091 * 109.41633 * 298.84001 * 20 19 18 22 22 C 1.38378 * 120.30314 * 0.25299 * 15 14 13 23 23 C 1.37927 * 120.15741 * 359.49187 * 22 15 14 24 24 H 0.96996 * 120.00133 * 359.97438 * 1 2 3 25 25 H 1.07991 * 120.07786 * 0.02562 * 13 12 10 26 26 H 1.08003 * 119.92006 * 179.97438 * 14 13 12 27 27 H 1.09002 * 109.54301 * 359.97438 * 16 15 14 28 28 H 1.09006 * 109.52033 * 296.84283 * 17 16 15 29 29 H 1.09002 * 109.52377 * 57.02353 * 17 16 15 30 30 H 1.09007 * 109.45633 * 182.44534 * 18 17 16 31 31 H 1.09003 * 109.46692 * 62.44798 * 18 17 16 32 32 H 1.09000 * 109.47917 * 178.85973 * 20 19 18 33 33 H 1.09000 * 109.49157 * 58.82974 * 20 19 18 34 34 H 1.09004 * 109.52607 * 297.70481 * 21 20 19 35 35 H 1.08999 * 109.57497 * 177.54830 * 21 20 19 36 36 H 1.08004 * 119.92030 * 179.74425 * 22 15 14 37 37 H 1.08006 * 120.07915 * 180.23680 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0083 -1.2021 -0.0005 8 1 3.0883 -1.2021 -0.0001 9 8 1.3340 -2.3699 -0.0005 10 6 2.0679 -3.5000 -0.0016 11 8 3.2812 -3.4363 -0.0021 12 6 1.3975 -4.8156 -0.0023 13 6 2.1552 -5.9890 -0.0028 14 6 1.5223 -7.2146 -0.0040 15 6 0.1402 -7.2834 -0.0051 16 6 -0.5438 -8.6261 -0.0069 17 6 -1.4240 -8.7545 1.2402 18 6 -2.1747 -10.0899 1.1879 19 8 -2.9475 -10.1549 -0.0124 20 6 -2.1715 -10.0862 -1.2104 21 6 -1.4221 -8.7520 -1.2555 22 6 -0.6165 -6.1248 -0.0103 23 6 0.0030 -4.8925 -0.0039 24 1 -0.4850 0.8400 0.0004 25 1 3.2338 -5.9368 -0.0024 26 1 2.1069 -8.1227 -0.0048 27 1 0.2059 -9.4173 -0.0075 28 1 -0.7987 -8.7204 2.1324 29 1 -2.1415 -7.9343 1.2657 30 1 -2.8360 -10.1687 2.0508 31 1 -1.4575 -10.9106 1.2034 32 1 -2.8305 -10.1624 -2.0752 33 1 -1.4542 -10.9067 -1.2266 34 1 -2.1396 -7.9318 -1.2804 35 1 -0.7956 -8.7150 -2.1467 36 1 -1.6948 -6.1857 -0.0153 37 1 -0.5890 -3.9891 -0.0042 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869669288.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:24 Heat of formation + Delta-G solvation = -115.621507 kcal Electronic energy + Delta-G solvation = -20553.957812 eV Core-core repulsion = 17260.918562 eV Total energy + Delta-G solvation = -3293.039250 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.11105 -39.15949 -38.03645 -35.25496 -34.35467 -32.22863 -31.30267 -30.75048 -30.11802 -26.10705 -24.93896 -23.73642 -22.70674 -22.20836 -20.49022 -19.61125 -17.76599 -17.27052 -16.52078 -16.21784 -15.73184 -15.04110 -14.88256 -14.54184 -14.52634 -14.29651 -14.10144 -13.97881 -13.49031 -13.02698 -12.73281 -12.48884 -12.21562 -11.87522 -11.59044 -11.53737 -11.27612 -11.25270 -10.92913 -10.77800 -10.46774 -10.43335 -10.34476 -9.85728 -9.72929 -9.09660 -8.68209 -8.64372 -8.42291 -6.48859 -4.11446 1.20803 1.69060 3.09170 3.16540 3.24277 3.46001 3.65873 3.90413 4.30870 4.44330 4.53480 4.61020 4.67676 4.80680 5.00959 5.09263 5.12340 5.15641 5.22455 5.28171 5.44839 5.45223 5.49816 5.67343 5.70284 5.75376 5.88782 5.93605 6.07078 6.15248 6.26868 6.42607 6.76250 6.76672 6.96393 7.02561 7.20509 7.35561 7.89329 8.67511 9.00078 9.80477 10.68939 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.036590 B = 0.003395 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.050098 B = 8244.284617 C = 8680.903628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.041 3.959 3 Si 0.945 3.055 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.375 4.375 8 H 0.098 0.902 9 O -0.205 6.205 10 C 0.430 3.570 11 O -0.555 6.555 12 C -0.088 4.088 13 C -0.069 4.069 14 C -0.130 4.130 15 C -0.071 4.071 16 C -0.047 4.047 17 C -0.149 4.149 18 C 0.061 3.939 19 O -0.385 6.385 20 C 0.061 3.939 21 C -0.149 4.149 22 C -0.126 4.126 23 C -0.070 4.070 24 H 0.271 0.729 25 H 0.132 0.868 26 H 0.122 0.878 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.838 -18.570 -0.021 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.451 4.451 8 H 0.116 0.884 9 O -0.112 6.112 10 C 0.279 3.721 11 O -0.454 6.454 12 C -0.090 4.090 13 C -0.088 4.088 14 C -0.148 4.148 15 C -0.071 4.071 16 C -0.066 4.066 17 C -0.187 4.187 18 C -0.016 4.016 19 O -0.303 6.303 20 C -0.016 4.016 21 C -0.187 4.187 22 C -0.144 4.144 23 C -0.088 4.088 24 H 0.081 0.919 25 H 0.150 0.850 26 H 0.140 0.860 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.141 0.859 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.922 -18.381 -0.022 19.029 hybrid contribution 0.792 0.947 0.001 1.234 sum -4.131 -17.434 -0.021 17.917 Atomic orbital electron populations 1.69978 1.06078 1.27841 1.45601 1.25388 0.95859 0.98970 0.96146 0.85582 0.79524 0.79799 0.78197 1.18838 1.20061 1.20068 1.21373 0.92595 0.79776 1.51325 0.88423 1.83891 1.39212 1.13282 1.74790 1.20806 0.85883 0.85522 0.79902 1.90616 1.15170 1.87896 1.51715 1.19445 0.93676 0.91693 1.04152 1.21203 1.00490 0.90797 0.96290 1.20859 0.93656 0.97219 1.03090 1.19839 0.93487 0.94375 0.99396 1.20174 0.96717 0.94591 0.95094 1.22327 0.99318 0.98908 0.98133 1.22630 0.95197 0.96080 0.87674 1.87933 1.34245 1.94300 1.13851 1.22596 0.95150 0.96083 0.87737 1.22294 0.99356 0.98924 0.98137 1.20903 0.99695 0.91619 1.02166 1.21621 0.93874 0.98498 0.94794 0.91936 0.84986 0.86011 0.90435 0.90523 0.90453 0.88840 0.93280 0.88837 0.93279 0.90449 0.90539 0.85922 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.87 13.67 55.49 0.76 -24.11 16 2 C 0.04 1.15 5.50 -17.52 -0.10 1.06 16 3 Si 0.94 21.18 29.55 -169.99 -5.02 16.15 16 4 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.37 -11.16 9.65 30.95 0.30 -10.86 16 8 H 0.10 2.93 6.86 -52.49 -0.36 2.57 16 9 O -0.20 -5.96 8.99 -21.65 -0.19 -6.16 16 10 C 0.43 11.24 7.84 34.58 0.27 11.51 16 11 O -0.56 -15.55 15.59 -19.27 -0.30 -15.85 16 12 C -0.09 -1.83 5.87 -104.98 -0.62 -2.45 16 13 C -0.07 -1.21 9.60 -39.16 -0.38 -1.59 16 14 C -0.13 -1.80 9.65 -39.64 -0.38 -2.19 16 15 C -0.07 -0.92 4.80 -104.52 -0.50 -1.42 16 16 C -0.05 -0.47 2.44 -91.59 -0.22 -0.70 16 17 C -0.15 -1.40 5.30 -26.49 -0.14 -1.54 16 18 C 0.06 0.52 6.85 37.30 0.26 0.77 16 19 O -0.38 -3.99 10.77 -35.23 -0.38 -4.37 16 20 C 0.06 0.52 6.84 37.20 0.25 0.77 16 21 C -0.15 -1.40 5.27 -26.59 -0.14 -1.54 16 22 C -0.13 -1.84 8.63 -39.64 -0.34 -2.19 16 23 C -0.07 -1.28 9.62 -39.16 -0.38 -1.66 16 24 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.13 2.29 7.65 -52.49 -0.40 1.89 16 26 H 0.12 1.33 7.94 -52.48 -0.42 0.91 16 27 H 0.08 0.69 7.87 -51.93 -0.41 0.28 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.79 7.30 -51.93 -0.38 0.41 16 30 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.79 7.26 -51.93 -0.38 0.41 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.12 1.55 7.03 -52.48 -0.37 1.18 16 37 H 0.14 2.78 7.61 -52.48 -0.40 2.38 16 LS Contribution 314.42 15.07 4.74 4.74 Total: -1.00 -33.11 314.42 -7.30 -40.41 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -4.78 Total: 1.21 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -2.12 Total: -12.03 kcal Atomic # 7 Polarization: -24.87 SS G_CDS: 0.76 Total: -24.11 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.87 Total: -26.38 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.11 -7.30 -40.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869669288.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.215 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds