Wall clock time and date at job start Mon Mar 30 2020 01:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 119.99876 * 2 1 4 4 H 1.48500 * 109.47509 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47179 * 300.00122 * 3 2 1 6 6 H 1.48497 * 109.47195 * 60.00158 * 3 2 1 7 7 C 1.38814 * 120.00507 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00517 * 180.02562 * 7 2 1 9 9 O 1.34851 * 119.99521 * 359.97438 * 7 2 1 10 10 C 1.34740 * 117.00121 * 179.97438 * 9 7 2 11 11 O 1.21503 * 119.99540 * 0.02562 * 10 9 7 12 12 C 1.47656 * 120.00148 * 180.02562 * 10 9 7 13 13 C 1.39672 * 120.15156 * 180.02562 * 12 10 9 14 14 C 1.37931 * 119.84063 * 180.02562 * 13 12 10 15 15 C 1.38379 * 120.15995 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.84710 * 179.97438 * 15 14 13 17 17 C 1.53179 * 109.54458 * 120.17827 * 16 15 14 18 18 C 1.53280 * 109.06328 * 176.85180 * 17 16 15 19 19 O 1.42901 * 109.46155 * 302.44168 * 18 17 16 20 20 C 1.42903 * 114.09356 * 61.15994 * 19 18 17 21 21 C 1.53091 * 109.41633 * 298.84001 * 20 19 18 22 22 C 1.38378 * 120.30314 * 0.25299 * 15 14 13 23 23 C 1.37927 * 120.15741 * 359.49187 * 22 15 14 24 24 H 0.96996 * 120.00133 * 359.97438 * 1 2 3 25 25 H 1.07991 * 120.07786 * 0.02562 * 13 12 10 26 26 H 1.08003 * 119.92006 * 179.97438 * 14 13 12 27 27 H 1.09002 * 109.54301 * 359.97438 * 16 15 14 28 28 H 1.09006 * 109.52033 * 296.84283 * 17 16 15 29 29 H 1.09002 * 109.52377 * 57.02353 * 17 16 15 30 30 H 1.09007 * 109.45633 * 182.44534 * 18 17 16 31 31 H 1.09003 * 109.46692 * 62.44798 * 18 17 16 32 32 H 1.09000 * 109.47917 * 178.85973 * 20 19 18 33 33 H 1.09000 * 109.49157 * 58.82974 * 20 19 18 34 34 H 1.09004 * 109.52607 * 297.70481 * 21 20 19 35 35 H 1.08999 * 109.57497 * 177.54830 * 21 20 19 36 36 H 1.08004 * 119.92030 * 179.74425 * 22 15 14 37 37 H 1.08006 * 120.07915 * 180.23680 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0083 -1.2021 -0.0005 8 1 3.0883 -1.2021 -0.0001 9 8 1.3340 -2.3699 -0.0005 10 6 2.0679 -3.5000 -0.0016 11 8 3.2812 -3.4363 -0.0021 12 6 1.3975 -4.8156 -0.0023 13 6 2.1552 -5.9890 -0.0028 14 6 1.5223 -7.2146 -0.0040 15 6 0.1402 -7.2834 -0.0051 16 6 -0.5438 -8.6261 -0.0069 17 6 -1.4240 -8.7545 1.2402 18 6 -2.1747 -10.0899 1.1879 19 8 -2.9475 -10.1549 -0.0124 20 6 -2.1715 -10.0862 -1.2104 21 6 -1.4221 -8.7520 -1.2555 22 6 -0.6165 -6.1248 -0.0103 23 6 0.0030 -4.8925 -0.0039 24 1 -0.4850 0.8400 0.0004 25 1 3.2338 -5.9368 -0.0024 26 1 2.1069 -8.1227 -0.0048 27 1 0.2059 -9.4173 -0.0075 28 1 -0.7987 -8.7204 2.1324 29 1 -2.1415 -7.9343 1.2657 30 1 -2.8360 -10.1687 2.0508 31 1 -1.4575 -10.9106 1.2034 32 1 -2.8305 -10.1624 -2.0752 33 1 -1.4542 -10.9067 -1.2266 34 1 -2.1396 -7.9318 -1.2804 35 1 -0.7956 -8.7150 -2.1467 36 1 -1.6948 -6.1857 -0.0153 37 1 -0.5890 -3.9891 -0.0042 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869669288.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:24 Heat of formation + Delta-G solvation = -135.763219 kcal Electronic energy + Delta-G solvation = -20554.831222 eV Core-core repulsion = 17260.918562 eV Total energy + Delta-G solvation = -3293.912660 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.42092 -40.67175 -39.32252 -37.31168 -35.41868 -34.37890 -32.08008 -31.95787 -31.37831 -27.89438 -26.34691 -24.41091 -23.99797 -23.58397 -21.92717 -20.64437 -19.94504 -19.03449 -17.63305 -17.12281 -16.87816 -16.62675 -16.49325 -16.13028 -15.84095 -15.55867 -15.31971 -14.87145 -14.83134 -14.33041 -14.04807 -13.76828 -13.66630 -13.26774 -13.04783 -12.87424 -12.45501 -12.38598 -12.20570 -12.19637 -12.05376 -11.83708 -11.69368 -11.22232 -11.05835 -10.76043 -10.43766 -9.99163 -9.77431 -8.61517 -6.39157 -0.24506 0.38159 1.31466 1.33400 1.50665 1.74335 2.07325 2.68726 2.72857 2.99780 3.04501 3.55046 3.72476 3.96060 3.98775 4.01858 4.13212 4.28309 4.35701 4.38228 4.40341 4.59325 4.64850 4.70318 4.80381 4.86745 4.90540 4.96521 5.04188 5.08383 5.16789 5.21602 5.30724 5.36518 5.49223 5.60504 5.75639 5.90547 6.34324 6.54501 6.82830 7.66932 8.59398 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.036590 B = 0.003395 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.050098 B = 8244.284617 C = 8680.903628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.002 4.002 3 Si 1.021 2.979 4 H -0.265 1.265 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.423 4.423 8 H 0.082 0.918 9 O -0.233 6.233 10 C 0.429 3.571 11 O -0.584 6.584 12 C -0.130 4.130 13 C -0.070 4.070 14 C -0.115 4.115 15 C -0.045 4.045 16 C -0.045 4.045 17 C -0.149 4.149 18 C 0.060 3.940 19 O -0.406 6.406 20 C 0.061 3.939 21 C -0.149 4.149 22 C -0.118 4.118 23 C -0.078 4.078 24 H 0.281 0.719 25 H 0.129 0.871 26 H 0.166 0.834 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.145 0.855 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.163 -21.030 -0.026 21.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.203 4.203 3 Si 0.839 3.161 4 H -0.189 1.189 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.499 4.499 8 H 0.100 0.900 9 O -0.141 6.141 10 C 0.279 3.721 11 O -0.484 6.484 12 C -0.131 4.131 13 C -0.089 4.089 14 C -0.133 4.133 15 C -0.045 4.045 16 C -0.063 4.063 17 C -0.187 4.187 18 C -0.016 4.016 19 O -0.325 6.325 20 C -0.016 4.016 21 C -0.187 4.187 22 C -0.136 4.136 23 C -0.097 4.097 24 H 0.091 0.909 25 H 0.147 0.853 26 H 0.184 0.816 27 H 0.122 0.878 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.163 0.837 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.268 -20.871 -0.027 21.526 hybrid contribution 0.823 1.442 0.003 1.661 sum -4.445 -19.429 -0.024 19.931 Atomic orbital electron populations 1.70057 1.07701 1.29621 1.45944 1.26624 0.96962 1.02353 0.94391 0.84528 0.77731 0.74327 0.79476 1.18875 1.18111 1.18123 1.21563 0.92330 0.81095 1.54887 0.90034 1.83920 1.39952 1.14028 1.76177 1.21915 0.85920 0.86720 0.77499 1.90555 1.16504 1.88566 1.52769 1.19327 0.94764 0.89831 1.09153 1.21314 1.00332 0.91030 0.96174 1.21275 0.94215 0.97047 1.00715 1.20286 0.93344 0.95463 0.95412 1.20291 0.97374 0.92845 0.95838 1.22325 0.99115 0.99274 0.97959 1.22726 0.95568 0.95846 0.87452 1.87918 1.35486 1.94339 1.14803 1.22691 0.95517 0.95851 0.87519 1.22292 0.99154 0.99290 0.97958 1.21095 1.00938 0.90572 1.01004 1.21464 0.92849 0.99379 0.96003 0.90907 0.85349 0.81624 0.87839 0.89837 0.91724 0.87993 0.91536 0.87988 0.91536 0.91716 0.89856 0.83743 0.86675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.65 13.67 21.63 0.30 -53.35 16 2 C 0.00 -0.14 5.50 84.89 0.47 0.33 16 3 Si 1.02 44.13 29.55 68.60 2.03 46.16 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.42 -26.76 9.65 67.96 0.66 -26.10 16 8 H 0.08 5.24 6.86 -2.91 -0.02 5.22 16 9 O -0.23 -14.55 8.99 11.30 0.10 -14.45 16 10 C 0.43 23.93 7.84 70.31 0.55 24.48 16 11 O -0.58 -34.71 15.59 19.83 0.31 -34.40 16 12 C -0.13 -5.61 5.87 -20.10 -0.12 -5.72 16 13 C -0.07 -2.41 9.60 22.54 0.22 -2.20 16 14 C -0.12 -2.80 9.65 22.23 0.21 -2.58 16 15 C -0.04 -1.03 4.80 -19.80 -0.10 -1.12 16 16 C -0.05 -0.71 2.44 -11.42 -0.03 -0.74 16 17 C -0.15 -2.26 5.30 30.75 0.16 -2.10 16 18 C 0.06 0.80 6.85 72.08 0.49 1.29 16 19 O -0.41 -7.14 10.77 -148.98 -1.60 -8.74 16 20 C 0.06 0.80 6.84 72.01 0.49 1.30 16 21 C -0.15 -2.26 5.27 30.68 0.16 -2.10 16 22 C -0.12 -3.32 8.63 22.23 0.19 -3.13 16 23 C -0.08 -3.00 9.62 22.54 0.22 -2.79 16 24 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 25 H 0.13 4.46 7.65 -2.92 -0.02 4.44 16 26 H 0.17 2.67 7.94 -2.91 -0.02 2.65 16 27 H 0.10 1.21 7.87 -2.39 -0.02 1.19 16 28 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.06 1.16 7.30 -2.39 -0.02 1.14 16 30 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 1.16 7.26 -2.38 -0.02 1.14 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.14 3.42 7.03 -2.91 -0.02 3.40 16 37 H 0.12 4.93 7.61 -2.91 -0.02 4.91 16 Total: -1.00 -77.20 314.42 5.78 -71.41 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 1.07 Total: 14.55 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: 3.58 Total: -21.18 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.30 Total: -53.35 kcal Atomic # 8 Polarization: -56.40 SS G_CDS: -1.19 Total: -57.59 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -77.20 5.78 -71.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869669288.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.349 kcal (2) G-P(sol) polarization free energy of solvation -77.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds