Wall clock time and date at job start Mon Mar 30 2020 02:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47240 * 2 1 4 4 C 1.50699 * 109.47034 * 240.00570 * 2 1 3 5 5 H 1.08003 * 120.00303 * 240.00113 * 4 2 1 6 6 C 1.37881 * 120.00516 * 59.99880 * 4 2 1 7 7 N 1.31520 * 119.99116 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00483 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47047 * 60.00145 * 8 6 4 10 10 H 1.48498 * 109.46947 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47043 * 299.99918 * 8 6 4 12 12 O 1.45196 * 109.47216 * 120.00638 * 2 1 3 13 13 C 1.34227 * 117.00121 * 269.99494 * 12 2 1 14 14 O 1.20827 * 119.99705 * 0.02562 * 13 12 2 15 15 C 1.50702 * 120.00135 * 179.97438 * 13 12 2 16 16 C 1.53003 * 109.46905 * 180.02562 * 15 13 12 17 17 H 1.08999 * 110.81077 * 51.68619 * 16 15 13 18 18 C 1.54709 * 110.74795 * 175.00150 * 16 15 13 19 19 C 1.51641 * 101.93464 * 143.57317 * 18 16 15 20 20 C 1.37747 * 132.17479 * 164.51276 * 19 18 16 21 21 C 1.38351 * 119.97906 * 180.56724 * 20 19 18 22 22 C 1.38284 * 119.76708 * 0.06964 * 21 20 19 23 23 C 1.37935 * 120.35151 * 359.77071 * 22 21 20 24 24 C 1.38882 * 107.04392 * 344.97550 * 19 18 16 25 25 O 1.36153 * 111.22119 * 358.34942 * 24 19 18 26 26 H 1.08998 * 109.47086 * 299.99417 * 1 2 3 27 27 H 1.09004 * 109.46724 * 59.99356 * 1 2 3 28 28 H 1.08993 * 109.47220 * 179.97438 * 1 2 3 29 29 H 0.97003 * 119.99316 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46988 * 60.00560 * 15 13 12 31 31 H 1.09000 * 109.47589 * 300.00311 * 15 13 12 32 32 H 1.09001 * 110.93482 * 25.41357 * 18 16 15 33 33 H 1.08994 * 110.93715 * 261.73343 * 18 16 15 34 34 H 1.07996 * 120.00915 * 0.54816 * 20 19 18 35 35 H 1.07992 * 120.11464 * 180.09127 * 21 20 19 36 36 H 1.08004 * 119.82582 * 179.79738 * 22 21 20 37 37 H 1.08002 * 119.87808 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3213 -1.1200 -4.0081 9 1 1.8257 -2.5199 -4.0080 10 1 1.8268 -0.4195 -5.2205 11 1 3.8063 -1.1206 -4.0084 12 8 2.0140 -0.6846 1.1854 13 6 2.2172 0.0638 2.2810 14 8 1.9975 1.2515 2.2506 15 6 2.7184 -0.5776 3.5494 16 6 2.8626 0.4884 4.6374 17 1 1.9435 1.0657 4.7382 18 6 3.2557 -0.1563 5.9877 19 6 4.1928 0.8836 6.5706 20 6 4.6800 1.0793 7.8441 21 6 5.5306 2.1391 8.1037 22 6 5.8871 2.9995 7.0815 23 6 5.4031 2.8035 5.8048 24 6 4.5458 1.7395 5.5354 25 8 3.9785 1.3515 4.3601 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.7095 1.1621 -3.4843 30 1 3.6872 -1.0412 3.3638 31 1 2.0089 -1.3373 3.8773 32 1 3.7730 -1.1029 5.8313 33 1 2.3810 -0.2925 6.6235 34 1 4.3978 0.4057 8.6398 35 1 5.9149 2.2937 9.1010 36 1 6.5485 3.8290 7.2838 37 1 5.6863 3.4804 5.0123 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870205766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:26 Heat of formation + Delta-G solvation = -119.197348 kcal Electronic energy + Delta-G solvation = -20642.922702 eV Core-core repulsion = 17349.728392 eV Total energy + Delta-G solvation = -3293.194310 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.24850 -41.14841 -38.48509 -37.55678 -35.35380 -34.27568 -32.54618 -31.54767 -30.94006 -28.33104 -27.47257 -24.42657 -23.35758 -22.69972 -22.58085 -21.24842 -18.96017 -18.67015 -18.40766 -17.69728 -17.45066 -16.85351 -16.70281 -16.29599 -15.80119 -15.15136 -14.83816 -14.56673 -14.25821 -14.06092 -13.99921 -13.79695 -13.41670 -13.32083 -13.03952 -12.96093 -12.83935 -12.66818 -12.50606 -12.40106 -12.18037 -11.86139 -11.67331 -11.60014 -11.35247 -11.01563 -10.61541 -9.82987 -9.10227 -8.30717 -6.48312 0.35103 0.42431 1.33918 1.40463 1.44734 1.52821 1.96603 2.27210 2.40261 2.78181 2.99752 3.32877 3.51429 3.77215 3.88605 3.99599 4.18145 4.21238 4.35236 4.45031 4.51732 4.55029 4.58627 4.67751 4.75785 4.81643 4.87486 4.90728 5.13504 5.15703 5.40686 5.46412 5.48327 5.55914 5.61226 5.75870 5.90914 6.08093 6.26790 6.57406 6.95268 7.23981 8.76989 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.037296 B = 0.003331 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.574542 B = 8403.370502 C = 8629.544977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.217 3.783 3 H 0.001 0.999 4 C -0.552 4.552 5 H 0.069 0.931 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.986 3.014 9 H -0.261 1.261 10 H -0.277 1.277 11 H -0.269 1.269 12 O -0.364 6.364 13 C 0.441 3.559 14 O -0.553 6.553 15 C -0.100 4.100 16 C 0.087 3.913 17 H 0.081 0.919 18 C -0.090 4.090 19 C -0.184 4.184 20 C -0.071 4.071 21 C -0.149 4.149 22 C -0.087 4.087 23 C -0.166 4.166 24 C 0.067 3.933 25 O -0.329 6.329 26 H 0.024 0.976 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.271 0.729 30 H 0.129 0.871 31 H 0.167 0.833 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.806 -2.872 22.404 23.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.163 3.837 3 H 0.019 0.981 4 C -0.589 4.589 5 H 0.087 0.913 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.808 3.192 9 H -0.185 1.185 10 H -0.202 1.202 11 H -0.194 1.194 12 O -0.280 6.280 13 C 0.286 3.714 14 O -0.444 6.444 15 C -0.136 4.136 16 C 0.032 3.968 17 H 0.098 0.902 18 C -0.126 4.126 19 C -0.185 4.185 20 C -0.089 4.089 21 C -0.167 4.167 22 C -0.105 4.105 23 C -0.185 4.185 24 C 0.023 3.977 25 O -0.244 6.244 26 H 0.043 0.957 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.147 0.853 31 H 0.184 0.816 32 H 0.135 0.865 33 H 0.142 0.858 34 H 0.173 0.827 35 H 0.177 0.823 36 H 0.172 0.828 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.679 -2.359 21.972 23.086 hybrid contribution -0.045 0.395 -1.362 1.419 sum 6.634 -1.964 20.610 21.740 Atomic orbital electron populations 1.21969 0.96536 1.00569 1.00796 1.20315 0.92169 0.91842 0.79343 0.98083 1.21305 1.33569 1.14009 0.90021 0.91303 1.25892 0.94675 0.95680 1.02305 1.70027 1.36603 1.23677 1.25324 0.85196 0.78726 0.78712 0.76553 1.18508 1.20182 1.19412 1.86459 1.76299 1.43710 1.21549 1.24496 0.73930 0.85890 0.87052 1.90612 1.49866 1.18673 1.85232 1.21693 1.06431 0.98600 0.86922 1.23281 0.89012 0.89872 0.94679 0.90157 1.21855 0.99940 0.97970 0.92882 1.21108 1.04128 0.98105 0.95169 1.20717 0.95712 0.98023 0.94467 1.21474 0.99234 0.95412 1.00534 1.21213 0.98578 0.99952 0.90751 1.20589 1.01524 0.97232 0.99105 1.20110 0.96369 0.95605 0.85652 1.86979 1.44376 1.64870 1.28192 0.95738 0.90207 0.93173 0.91965 0.85343 0.81564 0.86538 0.85833 0.82677 0.82272 0.82757 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.43 9.33 71.98 0.67 -6.76 16 2 C 0.22 12.33 2.56 29.85 0.08 12.40 16 3 H 0.00 0.09 7.16 -2.39 -0.02 0.07 16 4 C -0.55 -32.17 8.90 25.60 0.23 -31.94 16 5 H 0.07 3.89 7.81 -2.91 -0.02 3.87 16 6 C 0.01 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -54.11 11.32 21.45 0.24 -53.87 16 8 Si 0.99 43.59 29.54 68.60 2.03 45.62 16 9 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 10 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 12 O -0.36 -17.85 9.86 -51.39 -0.51 -18.36 16 13 C 0.44 18.95 7.88 71.24 0.56 19.52 16 14 O -0.55 -28.16 14.90 24.37 0.36 -27.80 16 15 C -0.10 -2.70 5.50 29.85 0.16 -2.54 16 16 C 0.09 2.38 3.04 31.18 0.09 2.48 16 17 H 0.08 2.38 7.88 -2.39 -0.02 2.36 16 18 C -0.09 -1.58 6.65 30.73 0.20 -1.38 16 19 C -0.18 -4.03 6.27 -19.53 -0.12 -4.16 16 20 C -0.07 -1.16 10.03 22.18 0.22 -0.93 16 21 C -0.15 -2.22 10.07 22.31 0.22 -2.00 16 22 C -0.09 -1.59 10.02 22.21 0.22 -1.37 16 23 C -0.17 -4.28 10.06 22.45 0.23 -4.05 16 24 C 0.07 1.97 7.03 22.67 0.16 2.13 16 25 O -0.33 -11.59 10.52 -92.72 -0.98 -12.56 16 26 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.08 4.52 6.07 -2.38 -0.01 4.50 16 28 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 30 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.17 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.12 1.56 7.92 -2.39 -0.02 1.54 16 33 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 35 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 36 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.12 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -76.98 318.19 5.60 -71.38 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 1.07 Total: 12.95 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: 3.38 Total: -17.35 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.24 Total: -53.87 kcal Atomic # 8 Polarization: -57.61 SS G_CDS: -1.12 Total: -58.72 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -76.98 5.60 -71.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.815 kcal (2) G-P(sol) polarization free energy of solvation -76.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds