Wall clock time and date at job start Mon Mar 30 2020 01:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 119.99837 * 2 1 4 4 H 1.48505 * 109.47223 * 269.99906 * 3 2 1 5 5 H 1.48503 * 109.47120 * 29.99531 * 3 2 1 6 6 H 1.48497 * 109.46981 * 149.99915 * 3 2 1 7 7 C 1.37872 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00366 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00068 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47022 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47025 * 180.02562 * 11 10 9 13 13 O 1.20831 * 119.99944 * 0.02562 * 12 11 10 14 14 O 1.34244 * 119.99714 * 180.02562 * 12 11 10 15 15 C 1.35993 * 116.99785 * 185.77312 * 14 12 11 16 16 C 1.38726 * 120.17747 * 68.98330 * 15 14 12 17 17 C 1.37892 * 120.29426 * 180.19412 * 16 15 14 18 18 C 1.39282 * 120.31534 * 0.02562 * 17 16 15 19 19 C 1.38966 * 118.94989 * 359.62378 * 18 17 16 20 20 C 1.37647 * 120.82692 * 0.57353 * 19 18 17 21 21 C 1.51661 * 106.99336 * 180.57119 * 19 18 17 22 22 C 1.54706 * 101.94532 * 15.71643 * 21 19 18 23 23 O 1.36221 * 129.80823 * 179.58889 * 18 17 16 24 24 H 0.96996 * 119.99967 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46773 * 59.99614 * 9 7 2 26 26 H 1.08996 * 109.46660 * 300.00036 * 9 7 2 27 27 H 1.09008 * 109.47037 * 60.00421 * 10 9 7 28 28 H 1.09004 * 109.47762 * 300.00109 * 10 9 7 29 29 H 1.08994 * 109.47008 * 60.00482 * 11 10 9 30 30 H 1.08996 * 109.47035 * 300.00048 * 11 10 9 31 31 H 1.08001 * 119.85551 * 0.18178 * 16 15 14 32 32 H 1.07998 * 119.84144 * 180.02562 * 17 16 15 33 33 H 1.07999 * 120.00644 * 179.62127 * 20 19 18 34 34 H 1.09001 * 110.93646 * 257.54810 * 21 19 18 35 35 H 1.08998 * 110.94499 * 133.89146 * 21 19 18 36 36 H 1.09002 * 110.74186 * 92.93031 * 22 21 19 37 37 H 1.08996 * 110.74796 * 216.09681 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0018 13 8 3.6476 -5.9117 0.0022 14 8 2.0122 -7.3982 0.0019 15 6 2.9430 -8.3821 0.1244 16 6 3.6245 -8.5522 1.3206 17 6 4.5717 -9.5465 1.4462 18 6 4.8532 -10.3888 0.3732 19 6 4.1598 -10.2149 -0.8184 20 6 3.2168 -9.2205 -0.9472 21 6 4.6639 -11.2714 -1.7828 22 6 5.3883 -12.2534 -0.8319 23 8 5.7437 -11.4155 0.2808 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6241 -2.5566 0.8903 27 1 2.8720 -3.6043 0.8906 28 1 2.8721 -3.6043 -0.8894 29 1 0.8535 -5.0451 -0.8886 30 1 0.8540 -5.0445 0.8914 31 1 3.4126 -7.9030 2.1573 32 1 5.0976 -9.6728 2.3810 33 1 2.6901 -9.0933 -1.8814 34 1 5.3601 -10.8412 -2.5027 35 1 3.8342 -11.7622 -2.2915 36 1 4.7161 -13.0510 -0.5154 37 1 6.2778 -12.6662 -1.3076 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870685981.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:01 Heat of formation + Delta-G solvation = -97.086867 kcal Electronic energy + Delta-G solvation = -20033.120170 eV Core-core repulsion = 16740.884642 eV Total energy + Delta-G solvation = -3292.235528 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.59399 -40.76167 -37.84453 -36.24366 -34.35192 -33.03414 -32.15865 -29.99539 -29.46333 -28.07622 -24.65398 -23.86050 -22.75747 -22.28190 -20.84130 -19.88686 -17.99007 -17.70607 -17.31319 -16.90736 -16.44372 -16.06439 -15.77698 -14.58964 -14.45638 -14.40276 -13.89869 -13.58913 -13.43242 -13.32507 -12.91286 -12.68647 -12.31314 -12.14833 -11.96619 -11.83233 -11.45544 -11.05034 -10.85185 -10.74158 -10.72037 -10.59609 -10.32747 -9.77492 -9.44498 -9.21579 -9.12115 -8.35878 -8.26868 -6.01341 -4.03360 0.86095 1.00217 2.34236 2.76095 2.92194 3.32907 3.38978 3.43353 3.49469 4.04366 4.23094 4.46358 4.50995 4.59659 4.75614 4.94472 5.02758 5.04214 5.26224 5.34854 5.35396 5.38348 5.53219 5.55217 5.66333 5.80436 6.01739 6.05398 6.11218 6.20398 6.57268 6.58379 6.77259 6.86860 7.04523 7.64345 7.75507 7.98029 8.00129 8.40605 9.03314 9.60936 11.10074 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.046963 B = 0.002675 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.067773 B =10465.698119 C =10588.758169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.100 4.100 11 C -0.109 4.109 12 C 0.455 3.545 13 O -0.488 6.488 14 O -0.296 6.296 15 C 0.065 3.935 16 C -0.088 4.088 17 C -0.121 4.121 18 C 0.102 3.898 19 C -0.163 4.163 20 C -0.070 4.070 21 C -0.109 4.109 22 C 0.052 3.948 23 O -0.304 6.304 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.145 -25.262 -1.378 26.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.016 4.016 10 C -0.138 4.138 11 C -0.146 4.146 12 C 0.299 3.701 13 O -0.372 6.372 14 O -0.213 6.213 15 C 0.023 3.977 16 C -0.107 4.107 17 C -0.139 4.139 18 C 0.057 3.943 19 C -0.164 4.164 20 C -0.088 4.088 21 C -0.146 4.146 22 C -0.023 4.023 23 O -0.218 6.218 24 H 0.070 0.930 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.582 -25.137 -1.259 26.015 hybrid contribution 0.379 0.873 -0.168 0.967 sum 6.961 -24.264 -1.427 25.283 Atomic orbital electron populations 1.69961 1.06030 1.26660 1.50911 1.25017 0.94872 0.99294 0.95282 0.86575 0.79874 0.83336 0.78131 1.20648 1.21216 1.19834 1.21230 0.93184 0.90887 1.50551 0.92530 1.19126 0.93862 0.91101 0.97502 1.21612 0.99020 0.91081 1.02101 1.21745 0.97179 0.90085 1.05593 1.24950 0.90561 0.82717 0.71846 1.90683 1.18426 1.84200 1.43857 1.84724 1.37602 1.15340 1.83595 1.18281 0.94353 0.91240 0.93783 1.21056 0.94780 0.97446 0.97386 1.20053 0.99936 0.96399 0.97539 1.19589 0.90084 0.90414 0.94226 1.20527 1.00255 1.00300 0.95345 1.20134 0.96251 0.94496 0.97956 1.21801 1.00927 0.94257 0.97589 1.23843 1.00735 0.92887 0.84852 1.86842 1.47466 1.36603 1.50851 0.92977 0.96303 0.96274 0.92336 0.92335 0.87781 0.87730 0.84437 0.84615 0.84743 0.88832 0.88761 0.90395 0.87463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.10 -2.08 4.44 -26.73 -0.12 -2.20 16 11 C -0.11 -1.76 5.81 -27.88 -0.16 -1.92 16 12 C 0.46 7.52 7.74 36.01 0.28 7.80 16 13 O -0.49 -9.47 15.40 -18.75 -0.29 -9.76 16 14 O -0.30 -4.40 10.05 -23.78 -0.24 -4.64 16 15 C 0.06 0.91 5.28 -39.20 -0.21 0.70 16 16 C -0.09 -1.14 9.31 -39.53 -0.37 -1.51 16 17 C -0.12 -1.42 10.06 -39.32 -0.40 -1.81 16 18 C 0.10 1.20 7.04 -38.92 -0.27 0.93 16 19 C -0.16 -1.80 6.27 -104.09 -0.65 -2.45 16 20 C -0.07 -0.85 9.97 -39.59 -0.39 -1.25 16 21 C -0.11 -0.79 7.11 -26.51 -0.19 -0.97 16 22 C 0.05 0.34 8.01 38.06 0.30 0.65 16 23 O -0.30 -3.27 11.10 -20.45 -0.23 -3.50 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 1.24 8.10 -51.92 -0.42 0.82 16 28 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 29 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 322.83 15.07 4.87 4.87 Total: -1.00 -33.00 322.83 -7.93 -40.94 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -5.03 Total: -3.49 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -2.73 Total: -15.20 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.74 Total: -25.98 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.75 Total: -17.89 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.00 -7.93 -40.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870685981.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.150 kcal (2) G-P(sol) polarization free energy of solvation -33.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds