Wall clock time and date at job start Mon Mar 30 2020 01:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 119.99837 * 2 1 4 4 H 1.48505 * 109.47223 * 269.99906 * 3 2 1 5 5 H 1.48503 * 109.47120 * 29.99531 * 3 2 1 6 6 H 1.48497 * 109.46981 * 149.99915 * 3 2 1 7 7 C 1.37872 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00366 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00068 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47022 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47025 * 180.02562 * 11 10 9 13 13 O 1.20831 * 119.99944 * 0.02562 * 12 11 10 14 14 O 1.34244 * 119.99714 * 180.02562 * 12 11 10 15 15 C 1.35993 * 116.99785 * 185.77312 * 14 12 11 16 16 C 1.38726 * 120.17747 * 68.98330 * 15 14 12 17 17 C 1.37892 * 120.29426 * 180.19412 * 16 15 14 18 18 C 1.39282 * 120.31534 * 0.02562 * 17 16 15 19 19 C 1.38966 * 118.94989 * 359.62378 * 18 17 16 20 20 C 1.37647 * 120.82692 * 0.57353 * 19 18 17 21 21 C 1.51661 * 106.99336 * 180.57119 * 19 18 17 22 22 C 1.54706 * 101.94532 * 15.71643 * 21 19 18 23 23 O 1.36221 * 129.80823 * 179.58889 * 18 17 16 24 24 H 0.96996 * 119.99967 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46773 * 59.99614 * 9 7 2 26 26 H 1.08996 * 109.46660 * 300.00036 * 9 7 2 27 27 H 1.09008 * 109.47037 * 60.00421 * 10 9 7 28 28 H 1.09004 * 109.47762 * 300.00109 * 10 9 7 29 29 H 1.08994 * 109.47008 * 60.00482 * 11 10 9 30 30 H 1.08996 * 109.47035 * 300.00048 * 11 10 9 31 31 H 1.08001 * 119.85551 * 0.18178 * 16 15 14 32 32 H 1.07998 * 119.84144 * 180.02562 * 17 16 15 33 33 H 1.07999 * 120.00644 * 179.62127 * 20 19 18 34 34 H 1.09001 * 110.93646 * 257.54810 * 21 19 18 35 35 H 1.08998 * 110.94499 * 133.89146 * 21 19 18 36 36 H 1.09002 * 110.74186 * 92.93031 * 22 21 19 37 37 H 1.08996 * 110.74796 * 216.09681 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0018 13 8 3.6476 -5.9117 0.0022 14 8 2.0122 -7.3982 0.0019 15 6 2.9430 -8.3821 0.1244 16 6 3.6245 -8.5522 1.3206 17 6 4.5717 -9.5465 1.4462 18 6 4.8532 -10.3888 0.3732 19 6 4.1598 -10.2149 -0.8184 20 6 3.2168 -9.2205 -0.9472 21 6 4.6639 -11.2714 -1.7828 22 6 5.3883 -12.2534 -0.8319 23 8 5.7437 -11.4155 0.2808 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6241 -2.5566 0.8903 27 1 2.8720 -3.6043 0.8906 28 1 2.8721 -3.6043 -0.8894 29 1 0.8535 -5.0451 -0.8886 30 1 0.8540 -5.0445 0.8914 31 1 3.4126 -7.9030 2.1573 32 1 5.0976 -9.6728 2.3810 33 1 2.6901 -9.0933 -1.8814 34 1 5.3601 -10.8412 -2.5027 35 1 3.8342 -11.7622 -2.2915 36 1 4.7161 -13.0510 -0.5154 37 1 6.2778 -12.6662 -1.3076 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870685981.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:01 Heat of formation + Delta-G solvation = -115.186587 kcal Electronic energy + Delta-G solvation = -20033.905033 eV Core-core repulsion = 16740.884642 eV Total energy + Delta-G solvation = -3293.020390 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.57770 -41.76582 -38.97959 -37.30638 -36.19719 -34.11900 -33.77500 -31.02482 -30.31171 -29.69347 -26.36970 -24.65423 -24.08962 -23.08610 -22.22594 -21.36033 -19.16675 -18.63558 -18.49944 -18.27186 -17.77524 -17.16274 -16.87190 -16.47783 -15.77746 -15.31309 -15.19149 -14.70440 -14.38778 -14.29845 -14.05691 -13.88863 -13.65844 -13.54363 -13.24986 -12.85402 -12.67490 -12.62086 -12.57796 -12.45221 -11.91170 -11.70022 -11.64589 -11.57915 -11.40831 -11.18419 -10.53967 -10.09463 -9.16780 -8.20142 -6.29941 -0.10722 0.10879 1.04875 1.40719 1.41336 1.52635 1.63603 2.19483 2.41807 2.55605 3.13401 3.32194 3.55516 3.63627 3.84070 4.01093 4.05385 4.15275 4.17093 4.19868 4.39942 4.57412 4.59592 4.76771 4.81570 4.84410 4.88601 4.97724 5.02636 5.13161 5.15752 5.17807 5.22415 5.50640 5.55084 5.73003 5.86196 6.02876 6.26149 6.74855 6.85651 7.38766 8.91362 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.046963 B = 0.002675 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.067773 B =10465.698119 C =10588.758169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.053 0.947 9 C 0.025 3.975 10 C -0.087 4.087 11 C -0.101 4.101 12 C 0.465 3.535 13 O -0.522 6.522 14 O -0.288 6.288 15 C 0.031 3.969 16 C -0.099 4.099 17 C -0.130 4.130 18 C 0.095 3.905 19 C -0.167 4.167 20 C -0.076 4.076 21 C -0.106 4.106 22 C 0.046 3.954 23 O -0.319 6.319 24 H 0.265 0.735 25 H 0.005 0.995 26 H 0.005 0.995 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.139 0.861 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.865 -26.597 -2.039 27.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.125 4.125 11 C -0.138 4.138 12 C 0.310 3.690 13 O -0.408 6.408 14 O -0.204 6.204 15 C -0.010 4.010 16 C -0.117 4.117 17 C -0.148 4.148 18 C 0.050 3.950 19 C -0.168 4.168 20 C -0.094 4.094 21 C -0.142 4.142 22 C -0.028 4.028 23 O -0.233 6.233 24 H 0.073 0.927 25 H 0.023 0.977 26 H 0.024 0.976 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.157 0.843 32 H 0.170 0.830 33 H 0.167 0.833 34 H 0.120 0.880 35 H 0.136 0.864 36 H 0.112 0.888 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.293 -26.503 -1.925 27.555 hybrid contribution 0.188 1.150 0.025 1.166 sum 7.481 -25.353 -1.899 26.502 Atomic orbital electron populations 1.70064 1.07474 1.27808 1.51532 1.25889 0.95804 1.03037 0.94743 0.85511 0.78637 0.78793 0.78504 1.19772 1.20440 1.19250 1.21669 0.93408 0.92658 1.50749 0.92861 1.19011 0.94164 0.91987 0.96020 1.21297 0.97958 0.92050 1.01151 1.21564 0.96764 0.87830 1.07631 1.24800 0.89802 0.83449 0.70913 1.90670 1.19725 1.84816 1.45623 1.84694 1.37756 1.14788 1.83146 1.18612 0.95618 0.91732 0.95070 1.21164 0.95216 0.98027 0.97339 1.20263 0.99788 0.96197 0.98578 1.19828 0.90073 0.90612 0.94500 1.20960 0.99211 1.00396 0.96270 1.20337 0.96613 0.94463 0.98024 1.21944 1.01839 0.93264 0.97173 1.24212 1.02419 0.92503 0.83659 1.86827 1.47386 1.36654 1.52474 0.92656 0.97677 0.97640 0.93264 0.93320 0.85768 0.85694 0.84278 0.83024 0.83325 0.87971 0.86382 0.88753 0.84793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 2 C 0.00 0.19 5.46 84.65 0.46 0.66 16 3 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.55 -31.43 9.11 25.60 0.23 -31.20 16 8 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16 9 C 0.03 1.29 4.97 29.85 0.15 1.44 16 10 C -0.09 -3.63 4.44 30.59 0.14 -3.49 16 11 C -0.10 -3.20 5.81 29.85 0.17 -3.03 16 12 C 0.46 15.25 7.74 71.24 0.55 15.80 16 13 O -0.52 -20.44 15.40 21.95 0.34 -20.10 16 14 O -0.29 -8.44 10.05 3.95 0.04 -8.40 16 15 C 0.03 0.86 5.28 22.52 0.12 0.98 16 16 C -0.10 -2.57 9.31 22.30 0.21 -2.37 16 17 C -0.13 -3.00 10.06 22.44 0.23 -2.78 16 18 C 0.10 2.14 7.04 22.70 0.16 2.30 16 19 C -0.17 -3.42 6.27 -19.52 -0.12 -3.55 16 20 C -0.08 -1.78 9.97 22.26 0.22 -1.56 16 21 C -0.11 -1.22 7.11 30.74 0.22 -1.00 16 22 C 0.05 0.47 8.01 72.56 0.58 1.06 16 23 O -0.32 -6.29 11.10 -96.08 -1.07 -7.36 16 24 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 25 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.05 2.12 8.10 -2.38 -0.02 2.10 16 28 H 0.05 2.10 8.10 -2.38 -0.02 2.08 16 29 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 30 H 0.13 3.49 8.14 -2.39 -0.02 3.47 16 31 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 32 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 33 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -71.23 322.83 6.00 -65.23 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 1.06 Total: 6.14 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 3.32 Total: -26.74 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.28 Total: -55.44 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.69 Total: -35.86 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -71.23 6.00 -65.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870685981.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.955 kcal (2) G-P(sol) polarization free energy of solvation -71.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds