Wall clock time and date at job start Mon Mar 30 2020 02:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47232 * 2 1 4 4 H 1.09003 * 109.47573 * 305.00417 * 3 2 1 5 5 O 1.45202 * 109.46870 * 65.00169 * 3 2 1 6 6 C 1.34702 * 117.00294 * 269.99740 * 5 3 2 7 7 O 1.21474 * 119.99817 * 0.02562 * 6 5 3 8 8 C 1.47762 * 120.00213 * 179.97438 * 6 5 3 9 9 C 1.39966 * 120.03229 * 359.73028 * 8 6 5 10 10 C 1.38315 * 120.35614 * 179.76547 * 9 8 6 11 11 C 1.37768 * 120.41678 * 0.50733 * 10 9 8 12 12 C 1.40754 * 120.04872 * 359.74623 * 11 10 9 13 13 C 1.41440 * 120.17565 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99705 * 24.44109 * 13 12 11 15 15 C 1.39934 * 120.00087 * 204.44398 * 13 12 11 16 16 N 1.30820 * 120.00219 * 17.87638 * 15 13 12 17 17 Si 1.86802 * 119.99745 * 197.88598 * 15 13 12 18 18 H 1.48491 * 109.47443 * 89.99516 * 17 15 13 19 19 H 1.48508 * 109.46816 * 209.99893 * 17 15 13 20 20 H 1.48501 * 109.46967 * 329.99357 * 17 15 13 21 21 C 1.39054 * 120.03300 * 180.02562 * 8 6 5 22 22 C 1.50702 * 109.47444 * 184.99961 * 3 2 1 23 23 C 1.50700 * 119.99486 * 79.99952 * 22 3 2 24 24 O 1.20756 * 120.00134 * 260.00295 * 22 3 2 25 25 H 1.09005 * 109.47167 * 299.99562 * 1 2 3 26 26 H 1.08997 * 109.47504 * 59.99675 * 1 2 3 27 27 H 1.09000 * 109.47486 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46750 * 240.00352 * 2 1 3 29 29 H 1.08997 * 109.47504 * 120.00325 * 2 1 3 30 30 H 1.08000 * 119.82274 * 359.97438 * 9 8 6 31 31 H 1.07997 * 119.79512 * 180.25826 * 10 9 8 32 32 H 1.07993 * 119.97115 * 179.76380 * 11 10 9 33 33 H 0.97005 * 120.00390 * 180.02562 * 16 15 13 34 34 H 1.08005 * 120.20427 * 359.95430 * 21 8 6 35 35 H 1.08999 * 109.47717 * 0.02562 * 23 22 3 36 36 H 1.09006 * 109.46805 * 120.00498 * 23 22 3 37 37 H 1.08994 * 109.47426 * 240.00154 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6559 2.0916 1.2408 6 6 0.4686 2.7277 1.2562 7 8 -0.2271 2.7394 0.2604 8 6 0.0119 3.4102 2.4846 9 6 0.8099 3.3915 3.6343 10 6 0.3912 4.0322 4.7863 11 6 -0.8203 4.6873 4.8190 12 6 -1.6390 4.7126 3.6744 13 6 -2.8831 5.3848 3.7048 14 1 -3.0474 6.1849 4.4115 15 6 -3.9010 5.0132 2.8195 16 7 -3.8531 3.8527 2.2175 17 14 -5.3282 6.1745 2.4969 18 1 -4.9965 7.0607 1.3525 19 1 -6.5451 5.3860 2.1760 20 1 -5.5778 6.9998 3.7060 21 6 -1.2138 4.0666 2.5013 22 6 3.5419 1.4444 -0.1238 23 6 4.1869 1.2561 -1.4728 24 8 4.2285 1.5966 0.8578 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.7593 2.8767 3.6208 31 1 1.0161 4.0156 5.6670 32 1 -1.1418 5.1820 5.7235 33 1 -4.5585 3.5953 1.6035 34 1 -1.8350 4.0803 1.6179 35 1 3.4138 1.1355 -2.2316 36 1 4.7951 2.1291 -1.7097 37 1 4.8184 0.3679 -1.4528 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873348692.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:31 Heat of formation + Delta-G solvation = -115.912623 kcal Electronic energy + Delta-G solvation = -21116.272016 eV Core-core repulsion = 17823.220142 eV Total energy + Delta-G solvation = -3293.051874 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.41911 -39.04063 -37.39243 -35.83557 -33.86791 -33.53401 -30.58550 -30.31850 -29.51314 -27.20020 -25.36333 -23.30700 -21.98309 -21.00621 -19.88260 -19.69393 -17.94265 -16.91362 -16.35665 -16.00765 -15.47401 -15.04697 -14.80729 -14.74817 -14.44983 -14.00063 -13.30803 -13.22128 -12.82644 -12.71747 -12.60101 -12.35538 -12.04367 -11.90837 -11.79976 -11.68397 -11.22103 -11.14052 -10.89036 -10.74546 -10.55435 -10.34625 -10.18042 -9.74764 -9.64821 -9.38092 -9.26074 -7.76118 -7.56870 -6.84667 -4.45332 1.77645 1.95052 2.76667 2.95428 3.05302 3.08496 3.12417 3.55564 3.88731 4.00433 4.55679 4.76237 4.79064 4.96669 5.07747 5.16249 5.23421 5.49483 5.52734 5.63650 5.70092 5.75718 5.95724 6.11284 6.16658 6.42748 6.48101 6.61032 6.88450 6.92833 6.96577 7.15391 7.29786 7.36731 7.67464 7.74624 7.89360 8.08666 8.42606 8.50574 8.75260 8.77513 10.10735 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.023681 B = 0.004744 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.118106 B = 5901.225021 C = 6616.729196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C 0.036 3.964 4 H 0.109 0.891 5 O -0.334 6.334 6 C 0.512 3.488 7 O -0.513 6.513 8 C -0.116 4.116 9 C -0.192 4.192 10 C -0.104 4.104 11 C -0.200 4.200 12 C 0.095 3.905 13 C -0.461 4.461 14 H 0.083 0.917 15 C 0.074 3.926 16 N -0.787 5.787 17 Si 0.911 3.089 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.261 1.261 21 C -0.089 4.089 22 C 0.356 3.644 23 C -0.197 4.197 24 O -0.433 6.433 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.284 0.716 34 H 0.136 0.864 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.119 -5.604 -7.224 12.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.021 4.021 4 H 0.127 0.873 5 O -0.251 6.251 6 C 0.359 3.641 7 O -0.402 6.402 8 C -0.117 4.117 9 C -0.211 4.211 10 C -0.122 4.122 11 C -0.220 4.220 12 C 0.092 3.908 13 C -0.490 4.490 14 H 0.101 0.899 15 C -0.145 4.145 16 N -0.412 5.412 17 Si 0.735 3.265 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.185 1.185 21 C -0.108 4.108 22 C 0.229 3.771 23 C -0.254 4.254 24 O -0.304 6.304 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.154 0.846 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.152 -5.696 -7.163 12.256 hybrid contribution -0.789 0.326 -0.382 0.936 sum 7.363 -5.370 -7.545 11.831 Atomic orbital electron populations 1.21829 0.93576 1.01634 1.03730 1.21818 0.98178 0.93444 1.03241 1.23238 0.94329 0.95658 0.88881 0.87292 1.86770 1.38129 1.64002 1.36226 1.21930 0.77922 0.75030 0.89212 1.90752 1.54766 1.59040 1.35685 1.18819 0.97753 1.04576 0.90597 1.20626 1.00176 1.06814 0.93524 1.20523 0.96385 0.98786 0.96524 1.21204 0.96887 1.06258 0.97649 1.17537 0.92745 0.90646 0.89824 1.19577 0.96251 1.16519 1.16635 0.89935 1.25949 0.99800 0.94732 0.94001 1.69777 1.32490 1.17612 1.21324 0.86260 0.79582 0.80735 0.79898 1.19153 1.20220 1.18534 1.21655 0.92329 0.97414 0.99414 1.24622 0.89861 0.71766 0.90874 1.22211 1.02729 1.04984 0.95445 1.90437 1.65725 1.33639 1.40573 0.92035 0.91594 0.92518 0.90063 0.90617 0.87735 0.88485 0.88312 0.90456 0.84604 0.89688 0.88478 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.56 37.16 0.32 -1.89 16 2 C -0.13 -1.63 5.63 -26.73 -0.15 -1.78 16 3 C 0.04 0.53 2.51 -27.88 -0.07 0.46 16 4 H 0.11 1.55 7.16 -51.93 -0.37 1.17 16 5 O -0.33 -6.54 8.67 -46.95 -0.41 -6.95 16 6 C 0.51 11.35 6.35 34.62 0.22 11.57 16 7 O -0.51 -11.73 13.52 -19.25 -0.26 -11.99 16 8 C -0.12 -2.82 5.87 -105.05 -0.62 -3.44 16 9 C -0.19 -4.38 9.62 -38.91 -0.37 -4.75 16 10 C -0.10 -2.30 10.01 -39.72 -0.40 -2.70 16 11 C -0.20 -4.77 9.78 -38.80 -0.38 -5.15 16 12 C 0.09 2.49 5.57 -106.87 -0.60 1.89 16 13 C -0.46 -11.94 9.05 -37.73 -0.34 -12.28 16 14 H 0.08 2.03 7.91 -52.48 -0.42 1.62 16 15 C 0.07 1.83 5.14 -17.35 -0.09 1.74 16 16 N -0.79 -20.37 10.95 55.55 0.61 -19.76 16 17 Si 0.91 18.45 29.60 -169.99 -5.03 13.42 16 18 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 19 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 20 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 21 C -0.09 -2.34 8.24 -38.43 -0.32 -2.65 16 22 C 0.36 4.65 6.53 -29.03 -0.19 4.47 16 23 C -0.20 -1.53 10.33 36.01 0.37 -1.16 16 24 O -0.43 -7.37 17.36 -12.82 -0.22 -7.59 16 25 H 0.06 1.13 6.06 -51.93 -0.31 0.82 16 26 H 0.07 0.98 7.79 -51.93 -0.40 0.58 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.10 2.24 7.59 -52.49 -0.40 1.84 16 31 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 33 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 34 H 0.14 3.79 5.74 -52.48 -0.30 3.49 16 35 H 0.08 0.49 8.00 -51.93 -0.42 0.08 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 319.98 15.07 4.82 4.82 Total: -1.00 -30.03 319.98 -7.82 -37.84 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -4.71 Total: 5.88 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -2.61 Total: -15.68 kcal Atomic # 7 Polarization: -20.37 SS G_CDS: 0.61 Total: -19.76 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.89 Total: -26.53 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.03 -7.82 -37.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873348692.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.069 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds