Wall clock time and date at job start Mon Mar 30 2020 02:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47232 * 2 1 4 4 H 1.09003 * 109.47573 * 305.00417 * 3 2 1 5 5 O 1.45202 * 109.46870 * 65.00169 * 3 2 1 6 6 C 1.34702 * 117.00294 * 269.99740 * 5 3 2 7 7 O 1.21474 * 119.99817 * 0.02562 * 6 5 3 8 8 C 1.47762 * 120.00213 * 179.97438 * 6 5 3 9 9 C 1.39966 * 120.03229 * 359.73028 * 8 6 5 10 10 C 1.38315 * 120.35614 * 179.76547 * 9 8 6 11 11 C 1.37768 * 120.41678 * 0.50733 * 10 9 8 12 12 C 1.40754 * 120.04872 * 359.74623 * 11 10 9 13 13 C 1.41440 * 120.17565 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99705 * 24.44109 * 13 12 11 15 15 C 1.39934 * 120.00087 * 204.44398 * 13 12 11 16 16 N 1.30820 * 120.00219 * 17.87638 * 15 13 12 17 17 Si 1.86802 * 119.99745 * 197.88598 * 15 13 12 18 18 H 1.48491 * 109.47443 * 89.99516 * 17 15 13 19 19 H 1.48508 * 109.46816 * 209.99893 * 17 15 13 20 20 H 1.48501 * 109.46967 * 329.99357 * 17 15 13 21 21 C 1.39054 * 120.03300 * 180.02562 * 8 6 5 22 22 C 1.50702 * 109.47444 * 184.99961 * 3 2 1 23 23 C 1.50700 * 119.99486 * 79.99952 * 22 3 2 24 24 O 1.20756 * 120.00134 * 260.00295 * 22 3 2 25 25 H 1.09005 * 109.47167 * 299.99562 * 1 2 3 26 26 H 1.08997 * 109.47504 * 59.99675 * 1 2 3 27 27 H 1.09000 * 109.47486 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46750 * 240.00352 * 2 1 3 29 29 H 1.08997 * 109.47504 * 120.00325 * 2 1 3 30 30 H 1.08000 * 119.82274 * 359.97438 * 9 8 6 31 31 H 1.07997 * 119.79512 * 180.25826 * 10 9 8 32 32 H 1.07993 * 119.97115 * 179.76380 * 11 10 9 33 33 H 0.97005 * 120.00390 * 180.02562 * 16 15 13 34 34 H 1.08005 * 120.20427 * 359.95430 * 21 8 6 35 35 H 1.08999 * 109.47717 * 0.02562 * 23 22 3 36 36 H 1.09006 * 109.46805 * 120.00498 * 23 22 3 37 37 H 1.08994 * 109.47426 * 240.00154 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6559 2.0916 1.2408 6 6 0.4686 2.7277 1.2562 7 8 -0.2271 2.7394 0.2604 8 6 0.0119 3.4102 2.4846 9 6 0.8099 3.3915 3.6343 10 6 0.3912 4.0322 4.7863 11 6 -0.8203 4.6873 4.8190 12 6 -1.6390 4.7126 3.6744 13 6 -2.8831 5.3848 3.7048 14 1 -3.0474 6.1849 4.4115 15 6 -3.9010 5.0132 2.8195 16 7 -3.8531 3.8527 2.2175 17 14 -5.3282 6.1745 2.4969 18 1 -4.9965 7.0607 1.3525 19 1 -6.5451 5.3860 2.1760 20 1 -5.5778 6.9998 3.7060 21 6 -1.2138 4.0666 2.5013 22 6 3.5419 1.4444 -0.1238 23 6 4.1869 1.2561 -1.4728 24 8 4.2285 1.5966 0.8578 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.7593 2.8767 3.6208 31 1 1.0161 4.0156 5.6670 32 1 -1.1418 5.1820 5.7235 33 1 -4.5585 3.5953 1.6035 34 1 -1.8350 4.0803 1.6179 35 1 3.4138 1.1355 -2.2316 36 1 4.7951 2.1291 -1.7097 37 1 4.8184 0.3679 -1.4528 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873348692.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:30 Heat of formation + Delta-G solvation = -131.177201 kcal Electronic energy + Delta-G solvation = -21116.933938 eV Core-core repulsion = 17823.220142 eV Total energy + Delta-G solvation = -3293.713795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.89241 -40.37005 -39.18050 -37.42594 -35.66970 -34.83989 -32.17684 -31.44607 -31.39024 -28.36045 -27.25036 -24.99048 -23.13628 -22.87953 -21.56687 -20.83985 -19.71974 -18.43571 -17.94496 -17.50089 -17.00971 -16.57976 -16.33017 -15.94678 -15.85101 -15.35221 -15.08348 -14.81907 -14.38291 -14.19098 -13.63774 -13.48143 -13.36121 -13.16116 -13.05934 -12.98845 -12.95017 -12.84718 -12.59277 -12.23519 -12.06498 -11.99564 -11.65079 -11.56730 -11.32086 -11.11218 -10.61691 -9.65090 -9.48318 -8.70385 -6.41966 0.10328 0.74504 0.93529 1.37859 1.45657 1.52173 1.56405 1.78135 2.18732 2.69542 2.90453 3.59329 3.68097 3.76838 3.86306 4.04130 4.23649 4.35319 4.38614 4.58411 4.60286 4.62360 4.69498 4.79152 4.86677 4.96734 5.02840 5.08933 5.09664 5.22601 5.25665 5.32405 5.41948 5.78079 5.86446 5.98004 6.19157 6.35554 6.50178 6.79114 6.84403 6.86142 8.27278 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.023681 B = 0.004744 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.118106 B = 5901.225021 C = 6616.729196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.017 3.983 4 H 0.115 0.885 5 O -0.343 6.343 6 C 0.516 3.484 7 O -0.528 6.528 8 C -0.130 4.130 9 C -0.189 4.189 10 C -0.098 4.098 11 C -0.205 4.205 12 C 0.067 3.933 13 C -0.493 4.493 14 H 0.088 0.912 15 C 0.032 3.968 16 N -0.824 5.824 17 Si 0.985 3.015 18 H -0.265 1.265 19 H -0.269 1.269 20 H -0.251 1.251 21 C -0.120 4.120 22 C 0.364 3.636 23 C -0.186 4.186 24 O -0.480 6.480 25 H 0.015 0.985 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.131 0.869 29 H 0.072 0.928 30 H 0.120 0.880 31 H 0.137 0.863 32 H 0.116 0.884 33 H 0.289 0.711 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.248 -6.149 -8.041 13.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.039 4.039 4 H 0.133 0.867 5 O -0.260 6.260 6 C 0.364 3.636 7 O -0.419 6.419 8 C -0.131 4.131 9 C -0.209 4.209 10 C -0.116 4.116 11 C -0.225 4.225 12 C 0.065 3.935 13 C -0.522 4.522 14 H 0.106 0.894 15 C -0.183 4.183 16 N -0.449 5.449 17 Si 0.805 3.195 18 H -0.189 1.189 19 H -0.193 1.193 20 H -0.175 1.175 21 C -0.139 4.139 22 C 0.240 3.760 23 C -0.243 4.243 24 O -0.354 6.354 25 H 0.034 0.966 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.149 0.851 29 H 0.090 0.910 30 H 0.138 0.862 31 H 0.155 0.845 32 H 0.134 0.866 33 H 0.100 0.900 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.305 -6.257 -7.982 13.764 hybrid contribution -1.013 0.394 -0.138 1.095 sum 8.292 -5.863 -8.120 13.002 Atomic orbital electron populations 1.21787 0.95355 1.02286 1.01140 1.21864 0.96403 0.92296 1.05442 1.23910 0.96389 0.96665 0.86920 0.86697 1.86712 1.36413 1.63767 1.39123 1.21558 0.78623 0.75044 0.88372 1.90722 1.55447 1.59683 1.36050 1.19111 0.97434 1.04250 0.92292 1.20902 1.00381 1.06354 0.93245 1.20927 0.96038 0.97118 0.97549 1.21492 0.97227 1.06257 0.97533 1.17909 0.93701 0.91245 0.90631 1.19880 0.96930 1.17328 1.18076 0.89413 1.26854 1.02384 0.95951 0.93133 1.69863 1.33671 1.19370 1.21998 0.85156 0.76053 0.78380 0.79894 1.18945 1.19338 1.17466 1.21475 0.93414 1.00035 0.99007 1.25230 0.88407 0.69797 0.92525 1.22270 1.03540 1.06469 0.91984 1.90434 1.66113 1.36282 1.42592 0.96578 0.92175 0.90229 0.85131 0.90971 0.86165 0.84493 0.86571 0.90022 0.87123 0.87103 0.87291 0.86226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.32 8.56 71.98 0.62 -3.70 16 2 C -0.12 -2.87 5.63 30.59 0.17 -2.70 16 3 C 0.02 0.48 2.51 29.85 0.08 0.55 16 4 H 0.12 3.15 7.16 -2.39 -0.02 3.13 16 5 O -0.34 -13.58 8.67 -49.95 -0.43 -14.02 16 6 C 0.52 23.70 6.35 70.34 0.45 24.14 16 7 O -0.53 -25.17 13.52 19.92 0.27 -24.91 16 8 C -0.13 -6.52 5.87 -20.14 -0.12 -6.63 16 9 C -0.19 -8.62 9.62 22.71 0.22 -8.41 16 10 C -0.10 -4.24 10.01 22.18 0.22 -4.02 16 11 C -0.21 -9.79 9.78 22.77 0.22 -9.56 16 12 C 0.07 3.65 5.57 -21.32 -0.12 3.54 16 13 C -0.49 -26.32 9.05 23.47 0.21 -26.11 16 14 H 0.09 4.40 7.91 -2.91 -0.02 4.38 16 15 C 0.03 1.63 5.14 85.25 0.44 2.07 16 16 N -0.82 -44.43 10.95 21.82 0.24 -44.19 16 17 Si 0.98 38.34 29.60 68.60 2.03 40.37 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 19 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 20 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 21 C -0.12 -6.62 8.24 23.02 0.19 -6.43 16 22 C 0.36 8.80 6.53 29.10 0.19 8.99 16 23 C -0.19 -2.17 10.33 71.24 0.74 -1.43 16 24 O -0.48 -15.90 17.36 16.56 0.29 -15.61 16 25 H 0.01 0.59 6.06 -2.38 -0.01 0.57 16 26 H 0.06 1.78 7.79 -2.39 -0.02 1.77 16 27 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.12 5.05 7.59 -2.91 -0.02 5.03 16 31 H 0.14 4.76 8.06 -2.91 -0.02 4.74 16 32 H 0.12 5.01 8.06 -2.91 -0.02 4.99 16 33 H 0.29 14.24 8.30 -92.70 -0.77 13.48 16 34 H 0.11 6.60 5.74 -2.91 -0.02 6.59 16 35 H 0.11 0.75 8.00 -2.39 -0.02 0.73 16 36 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -69.50 319.98 6.97 -62.53 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 1.08 Total: 25.51 kcal Atomic # 6 Polarization: -33.19 SS G_CDS: 3.50 Total: -29.69 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.24 Total: -44.19 kcal Atomic # 8 Polarization: -54.66 SS G_CDS: 0.12 Total: -54.54 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -69.50 6.97 -62.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873348692.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.644 kcal (2) G-P(sol) polarization free energy of solvation -69.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds