Wall clock time and date at job start Mon Mar 30 2020 02:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47261 * 2 1 4 4 H 1.09001 * 109.47109 * 305.00029 * 3 2 1 5 5 O 1.45197 * 109.47103 * 65.00069 * 3 2 1 6 6 C 1.34779 * 117.00027 * 270.00017 * 5 3 2 7 7 O 1.21509 * 120.00165 * 0.02562 * 6 5 3 8 8 C 1.47511 * 120.00122 * 179.97438 * 6 5 3 9 9 C 1.40059 * 119.90250 * 180.02562 * 8 6 5 10 10 C 1.36300 * 120.10451 * 180.27974 * 9 8 6 11 11 C 1.40901 * 119.89267 * 359.51999 * 10 9 8 12 12 C 1.41091 * 120.09822 * 180.23439 * 11 10 9 13 13 H 1.08000 * 120.00248 * 204.79694 * 12 11 10 14 14 C 1.40250 * 119.99951 * 24.79101 * 12 11 10 15 15 N 1.30632 * 120.00017 * 17.74137 * 14 12 11 16 16 Si 1.86801 * 119.99972 * 197.74199 * 14 12 11 17 17 H 1.48503 * 109.46931 * 90.00339 * 16 14 12 18 18 H 1.48498 * 109.46965 * 209.99976 * 16 14 12 19 19 H 1.48500 * 109.47328 * 330.00380 * 16 14 12 20 20 C 1.40897 * 119.80304 * 0.47754 * 11 10 9 21 21 C 1.36301 * 119.89927 * 359.75417 * 20 11 10 22 22 C 1.50700 * 109.47618 * 185.00010 * 3 2 1 23 23 C 1.50704 * 119.99769 * 79.99707 * 22 3 2 24 24 O 1.20752 * 120.00255 * 260.00114 * 22 3 2 25 25 H 1.09002 * 109.46995 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47103 * 299.99917 * 1 2 3 27 27 H 1.09002 * 109.47274 * 60.00030 * 1 2 3 28 28 H 1.08998 * 109.47103 * 240.00083 * 2 1 3 29 29 H 1.09002 * 109.47274 * 119.99970 * 2 1 3 30 30 H 1.08010 * 119.94803 * 359.97438 * 9 8 6 31 31 H 1.08000 * 120.05511 * 179.74402 * 10 9 8 32 32 H 0.97002 * 120.00168 * 179.97438 * 15 14 12 33 33 H 1.08003 * 120.05095 * 179.73065 * 20 11 10 34 34 H 1.07992 * 119.94916 * 179.97438 * 21 20 11 35 35 H 1.09004 * 109.47286 * 90.00323 * 23 22 3 36 36 H 1.08996 * 109.47243 * 210.00518 * 23 22 3 37 37 H 1.09004 * 109.47221 * 330.00472 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6559 2.0916 1.2407 6 6 0.4679 2.7280 1.2560 7 8 -0.2280 2.7397 0.2600 8 6 0.0120 3.4095 2.4823 9 6 -1.2232 4.0697 2.4961 10 6 -1.6459 4.7055 3.6252 11 6 -0.8427 4.6893 4.7827 12 6 -1.2783 5.3419 5.9554 13 1 -0.5571 5.6825 6.6835 14 6 -2.6480 5.5483 6.1754 15 7 -3.5291 4.8567 5.5031 16 14 -3.2124 6.8122 7.4298 17 1 -3.3738 8.1306 6.7659 18 1 -4.5118 6.3877 8.0099 19 1 -2.2002 6.9230 8.5108 20 6 0.3991 4.0238 4.7642 21 6 0.8159 3.3947 3.6292 22 6 3.5419 1.4444 -0.1238 23 6 4.1869 1.2561 -1.4728 24 8 4.2285 1.5967 0.8577 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 -1.8394 4.0792 1.6091 31 1 -2.5966 5.2179 3.6337 32 1 -4.4764 4.9992 5.6556 33 1 1.0199 4.0126 5.6479 34 1 1.7677 2.8848 3.6140 35 1 4.3290 2.2275 -1.9464 36 1 5.1534 0.7677 -1.3484 37 1 3.5449 0.6368 -2.0993 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873372494.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:35 Heat of formation + Delta-G solvation = -120.928132 kcal Electronic energy + Delta-G solvation = -20808.710164 eV Core-core repulsion = 17515.440801 eV Total energy + Delta-G solvation = -3293.269362 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.28722 -38.94141 -37.45276 -35.71352 -34.00363 -33.53433 -30.55250 -30.25551 -29.58387 -27.30407 -25.92827 -22.64882 -21.90754 -21.08006 -19.90526 -19.62329 -17.60820 -17.20497 -16.68174 -15.89438 -15.59292 -15.22459 -14.81670 -14.67461 -14.07412 -13.94902 -13.30126 -13.15129 -12.81576 -12.69726 -12.37637 -12.23166 -12.11807 -11.99488 -11.79748 -11.78415 -11.38353 -11.28617 -11.01995 -10.83762 -10.69250 -10.27101 -10.10140 -9.67253 -9.55072 -9.40254 -9.33131 -7.75461 -7.64620 -7.10104 -4.68380 1.82347 2.04337 2.86510 2.92819 2.95761 3.03354 3.09141 3.61028 3.70269 4.08039 4.45758 4.80167 4.82556 5.00073 5.09062 5.18816 5.27822 5.50684 5.51519 5.69788 5.76880 5.90270 5.95883 6.15943 6.23346 6.26338 6.47136 6.73987 6.80840 6.95073 7.05029 7.09936 7.40853 7.41655 7.61585 7.78597 7.86156 8.00789 8.35438 8.56065 8.67957 8.72205 9.81196 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.036357 B = 0.003760 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.951840 B = 7445.534660 C = 7881.338645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C 0.038 3.962 4 H 0.108 0.892 5 O -0.339 6.339 6 C 0.513 3.487 7 O -0.546 6.546 8 C -0.275 4.275 9 C -0.032 4.032 10 C -0.185 4.185 11 C 0.132 3.868 12 C -0.434 4.434 13 H 0.088 0.912 14 C 0.073 3.927 15 N -0.763 5.763 16 Si 0.917 3.083 17 H -0.263 1.263 18 H -0.274 1.274 19 H -0.258 1.258 20 C -0.240 4.240 21 C -0.027 4.027 22 C 0.354 3.646 23 C -0.197 4.197 24 O -0.433 6.433 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.289 0.711 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.173 -5.280 -8.772 11.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.019 4.019 4 H 0.125 0.875 5 O -0.257 6.257 6 C 0.366 3.634 7 O -0.440 6.440 8 C -0.278 4.278 9 C -0.051 4.051 10 C -0.204 4.204 11 C 0.128 3.872 12 C -0.461 4.461 13 H 0.106 0.894 14 C -0.150 4.150 15 N -0.386 5.386 16 Si 0.740 3.260 17 H -0.188 1.188 18 H -0.199 1.199 19 H -0.182 1.182 20 C -0.259 4.259 21 C -0.046 4.046 22 C 0.227 3.773 23 C -0.254 4.254 24 O -0.304 6.304 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.120 0.880 31 H 0.141 0.859 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.106 -5.266 -8.548 11.751 hybrid contribution -0.480 0.397 0.306 0.694 sum 5.626 -4.869 -8.242 11.104 Atomic orbital electron populations 1.21812 0.93760 1.01368 1.03653 1.21813 0.98103 0.93659 1.03091 1.23103 0.94087 0.95487 0.89231 0.87483 1.86766 1.38689 1.64385 1.35864 1.21634 0.77703 0.75020 0.89056 1.90687 1.55528 1.61505 1.36236 1.18204 1.00472 1.16966 0.92139 1.20443 0.92913 0.94272 0.97457 1.20975 1.02135 1.05414 0.91857 1.17855 0.90395 0.86506 0.92407 1.19947 0.92176 1.29963 1.04050 0.89433 1.26168 0.96735 0.95197 0.96893 1.69740 1.03654 1.30907 1.34283 0.86158 0.78805 0.80660 0.80397 1.18807 1.19911 1.18174 1.20730 1.00256 1.07181 0.97726 1.20595 0.96663 0.95156 0.92150 1.24641 0.90011 0.71817 0.90815 1.22251 1.02623 1.04819 0.95747 1.90434 1.65746 1.33614 1.40588 0.92715 0.92017 0.91694 0.90267 0.90700 0.88023 0.85931 0.89968 0.88198 0.87846 0.88265 0.89224 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.56 37.15 0.32 -1.80 16 2 C -0.13 -1.63 5.63 -26.73 -0.15 -1.78 16 3 C 0.04 0.56 2.59 -27.88 -0.07 0.49 16 4 H 0.11 1.53 7.16 -51.93 -0.37 1.16 16 5 O -0.34 -6.69 8.66 -47.16 -0.41 -7.10 16 6 C 0.51 11.19 6.34 34.51 0.22 11.41 16 7 O -0.55 -12.05 13.51 -19.27 -0.26 -12.31 16 8 C -0.28 -6.53 5.89 -104.75 -0.62 -7.15 16 9 C -0.03 -0.78 9.52 -39.60 -0.38 -1.15 16 10 C -0.18 -4.68 8.63 -39.27 -0.34 -5.02 16 11 C 0.13 3.37 5.57 -106.80 -0.60 2.77 16 12 C -0.43 -10.71 9.04 -37.74 -0.34 -11.06 16 13 H 0.09 2.04 7.91 -52.49 -0.42 1.63 16 14 C 0.07 1.68 5.14 -17.31 -0.09 1.59 16 15 N -0.76 -18.29 10.95 55.56 0.61 -17.68 16 16 Si 0.92 17.09 29.60 -169.99 -5.03 12.06 16 17 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16 18 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 19 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 20 C -0.24 -5.75 9.73 -39.27 -0.38 -6.13 16 21 C -0.03 -0.63 9.55 -39.59 -0.38 -1.00 16 22 C 0.35 4.71 6.53 -29.03 -0.19 4.52 16 23 C -0.20 -1.57 10.25 36.01 0.37 -1.20 16 24 O -0.43 -7.51 17.36 -12.82 -0.22 -7.74 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 1.09 6.06 -51.93 -0.31 0.78 16 27 H 0.06 0.93 7.79 -51.93 -0.40 0.53 16 28 H 0.08 0.71 7.95 -51.93 -0.41 0.30 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.10 2.37 7.63 -52.48 -0.40 1.97 16 31 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 32 H 0.29 6.20 8.29 -40.82 -0.34 5.87 16 33 H 0.10 2.22 8.06 -52.48 -0.42 1.79 16 34 H 0.10 2.24 7.59 -52.49 -0.40 1.84 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.49 7.93 -51.93 -0.41 0.08 16 LS Contribution 319.47 15.07 4.81 4.81 Total: -1.00 -29.06 319.47 -7.82 -36.89 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -4.70 Total: 6.59 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -2.62 Total: -15.51 kcal Atomic # 7 Polarization: -18.29 SS G_CDS: 0.61 Total: -17.68 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.89 Total: -27.15 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.06 -7.82 -36.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873372494.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.042 kcal (2) G-P(sol) polarization free energy of solvation -29.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds