Wall clock time and date at job start Mon Mar 30 2020 02:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47261 * 2 1 4 4 H 1.09001 * 109.47109 * 305.00029 * 3 2 1 5 5 O 1.45197 * 109.47103 * 65.00069 * 3 2 1 6 6 C 1.34779 * 117.00027 * 270.00017 * 5 3 2 7 7 O 1.21509 * 120.00165 * 0.02562 * 6 5 3 8 8 C 1.47511 * 120.00122 * 179.97438 * 6 5 3 9 9 C 1.40059 * 119.90250 * 180.02562 * 8 6 5 10 10 C 1.36300 * 120.10451 * 180.27974 * 9 8 6 11 11 C 1.40901 * 119.89267 * 359.51999 * 10 9 8 12 12 C 1.41091 * 120.09822 * 180.23439 * 11 10 9 13 13 H 1.08000 * 120.00248 * 204.79694 * 12 11 10 14 14 C 1.40250 * 119.99951 * 24.79101 * 12 11 10 15 15 N 1.30632 * 120.00017 * 17.74137 * 14 12 11 16 16 Si 1.86801 * 119.99972 * 197.74199 * 14 12 11 17 17 H 1.48503 * 109.46931 * 90.00339 * 16 14 12 18 18 H 1.48498 * 109.46965 * 209.99976 * 16 14 12 19 19 H 1.48500 * 109.47328 * 330.00380 * 16 14 12 20 20 C 1.40897 * 119.80304 * 0.47754 * 11 10 9 21 21 C 1.36301 * 119.89927 * 359.75417 * 20 11 10 22 22 C 1.50700 * 109.47618 * 185.00010 * 3 2 1 23 23 C 1.50704 * 119.99769 * 79.99707 * 22 3 2 24 24 O 1.20752 * 120.00255 * 260.00114 * 22 3 2 25 25 H 1.09002 * 109.46995 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47103 * 299.99917 * 1 2 3 27 27 H 1.09002 * 109.47274 * 60.00030 * 1 2 3 28 28 H 1.08998 * 109.47103 * 240.00083 * 2 1 3 29 29 H 1.09002 * 109.47274 * 119.99970 * 2 1 3 30 30 H 1.08010 * 119.94803 * 359.97438 * 9 8 6 31 31 H 1.08000 * 120.05511 * 179.74402 * 10 9 8 32 32 H 0.97002 * 120.00168 * 179.97438 * 15 14 12 33 33 H 1.08003 * 120.05095 * 179.73065 * 20 11 10 34 34 H 1.07992 * 119.94916 * 179.97438 * 21 20 11 35 35 H 1.09004 * 109.47286 * 90.00323 * 23 22 3 36 36 H 1.08996 * 109.47243 * 210.00518 * 23 22 3 37 37 H 1.09004 * 109.47221 * 330.00472 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6559 2.0916 1.2407 6 6 0.4679 2.7280 1.2560 7 8 -0.2280 2.7397 0.2600 8 6 0.0120 3.4095 2.4823 9 6 -1.2232 4.0697 2.4961 10 6 -1.6459 4.7055 3.6252 11 6 -0.8427 4.6893 4.7827 12 6 -1.2783 5.3419 5.9554 13 1 -0.5571 5.6825 6.6835 14 6 -2.6480 5.5483 6.1754 15 7 -3.5291 4.8567 5.5031 16 14 -3.2124 6.8122 7.4298 17 1 -3.3738 8.1306 6.7659 18 1 -4.5118 6.3877 8.0099 19 1 -2.2002 6.9230 8.5108 20 6 0.3991 4.0238 4.7642 21 6 0.8159 3.3947 3.6292 22 6 3.5419 1.4444 -0.1238 23 6 4.1869 1.2561 -1.4728 24 8 4.2285 1.5967 0.8577 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 -1.8394 4.0792 1.6091 31 1 -2.5966 5.2179 3.6337 32 1 -4.4764 4.9992 5.6556 33 1 1.0199 4.0126 5.6479 34 1 1.7677 2.8848 3.6140 35 1 4.3290 2.2275 -1.9464 36 1 5.1534 0.7677 -1.3484 37 1 3.5449 0.6368 -2.0993 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873372494.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:34 Heat of formation + Delta-G solvation = -134.944546 kcal Electronic energy + Delta-G solvation = -20809.317961 eV Core-core repulsion = 17515.440801 eV Total energy + Delta-G solvation = -3293.877160 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.72489 -40.30421 -39.24054 -37.27937 -35.79465 -34.77193 -32.10639 -31.49177 -31.39949 -28.60513 -27.55440 -24.28065 -23.18944 -22.86737 -21.60833 -20.77316 -19.44491 -18.84704 -18.06139 -17.33531 -17.20336 -16.59165 -16.01214 -15.83545 -15.76045 -15.33897 -15.02396 -14.73711 -14.20553 -14.07966 -13.84363 -13.43248 -13.38249 -13.29063 -13.05123 -12.99294 -12.92768 -12.86632 -12.66646 -12.41537 -11.97557 -11.82530 -11.57238 -11.43505 -11.24833 -11.18194 -10.57563 -9.66725 -9.55445 -8.86721 -6.57592 0.22578 0.78561 1.10413 1.35755 1.40526 1.53753 1.74478 1.88106 2.13858 2.65968 2.97265 3.59550 3.73802 3.85413 3.97483 4.09436 4.30357 4.35889 4.41161 4.42700 4.60312 4.62424 4.75404 4.89216 4.90020 4.95056 5.01369 5.11266 5.14597 5.18241 5.29388 5.43538 5.52413 5.75127 5.89623 5.95394 6.12647 6.39606 6.46570 6.67844 6.79270 7.02519 8.08276 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.036357 B = 0.003760 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.951840 B = 7445.534660 C = 7881.338645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C 0.020 3.980 4 H 0.116 0.884 5 O -0.353 6.353 6 C 0.521 3.479 7 O -0.553 6.553 8 C -0.293 4.293 9 C -0.038 4.038 10 C -0.201 4.201 11 C 0.105 3.895 12 C -0.459 4.459 13 H 0.095 0.905 14 C 0.034 3.966 15 N -0.793 5.793 16 Si 0.993 3.007 17 H -0.259 1.259 18 H -0.264 1.264 19 H -0.252 1.252 20 C -0.251 4.251 21 C -0.026 4.026 22 C 0.361 3.639 23 C -0.187 4.187 24 O -0.483 6.483 25 H 0.077 0.923 26 H 0.018 0.982 27 H 0.062 0.938 28 H 0.128 0.872 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.300 0.700 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.834 -5.745 -9.687 13.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.036 4.036 4 H 0.133 0.867 5 O -0.271 6.271 6 C 0.373 3.627 7 O -0.447 6.447 8 C -0.295 4.295 9 C -0.056 4.056 10 C -0.220 4.220 11 C 0.102 3.898 12 C -0.485 4.485 13 H 0.113 0.887 14 C -0.186 4.186 15 N -0.415 5.415 16 Si 0.812 3.188 17 H -0.184 1.184 18 H -0.189 1.189 19 H -0.176 1.176 20 C -0.271 4.271 21 C -0.044 4.044 22 C 0.237 3.763 23 C -0.243 4.243 24 O -0.357 6.357 25 H 0.096 0.904 26 H 0.037 0.963 27 H 0.081 0.919 28 H 0.146 0.854 29 H 0.086 0.914 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.111 0.889 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.120 0.880 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.778 -5.757 -9.496 13.010 hybrid contribution -0.674 0.446 0.490 0.945 sum 6.104 -5.311 -9.007 12.107 Atomic orbital electron populations 1.21777 0.95099 1.02174 1.01359 1.21869 0.96767 0.92393 1.05115 1.23752 0.95960 0.96581 0.87284 0.86655 1.86709 1.37249 1.64267 1.38830 1.21213 0.78341 0.74946 0.88208 1.90661 1.55964 1.61820 1.36303 1.18472 1.00421 1.17168 0.93450 1.20526 0.93432 0.94353 0.97325 1.20951 1.02150 1.06423 0.92473 1.18186 0.91201 0.87390 0.93028 1.20269 0.93505 1.30635 1.04123 0.88745 1.27084 0.96112 0.96602 0.98778 1.69771 1.04509 1.31865 1.35395 0.85019 0.78560 0.77562 0.77617 1.18363 1.18871 1.17573 1.20927 1.00243 1.07331 0.98557 1.20729 0.97032 0.94835 0.91841 1.25288 0.88761 0.69775 0.92443 1.22301 1.03236 1.06506 0.92269 1.90433 1.66243 1.36359 1.42705 0.90397 0.96259 0.91926 0.85392 0.91390 0.87694 0.86849 0.88902 0.86856 0.86553 0.86564 0.87996 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 8.56 71.98 0.62 -3.40 16 2 C -0.12 -2.85 5.63 30.59 0.17 -2.68 16 3 C 0.02 0.57 2.59 29.85 0.08 0.64 16 4 H 0.12 3.08 7.16 -2.39 -0.02 3.07 16 5 O -0.35 -13.98 8.66 -50.73 -0.44 -14.42 16 6 C 0.52 23.08 6.34 70.27 0.45 23.53 16 7 O -0.55 -24.63 13.51 19.81 0.27 -24.37 16 8 C -0.29 -14.28 5.89 -19.95 -0.12 -14.40 16 9 C -0.04 -1.89 9.52 22.26 0.21 -1.68 16 10 C -0.20 -10.57 8.63 22.47 0.19 -10.38 16 11 C 0.11 5.54 5.57 -21.28 -0.12 5.42 16 12 C -0.46 -22.99 9.04 23.46 0.21 -22.78 16 13 H 0.09 4.44 7.91 -2.91 -0.02 4.42 16 14 C 0.03 1.59 5.14 85.36 0.44 2.03 16 15 N -0.79 -38.46 10.95 21.88 0.24 -38.22 16 16 Si 0.99 34.43 29.60 68.60 2.03 36.46 16 17 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 18 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 19 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16 20 C -0.25 -12.36 9.73 22.47 0.22 -12.14 16 21 C -0.03 -1.23 9.55 22.26 0.21 -1.02 16 22 C 0.36 8.90 6.53 29.10 0.19 9.09 16 23 C -0.19 -2.23 10.25 71.24 0.73 -1.50 16 24 O -0.48 -16.50 17.36 16.57 0.29 -16.21 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.02 0.67 6.06 -2.39 -0.01 0.65 16 27 H 0.06 1.71 7.79 -2.39 -0.02 1.70 16 28 H 0.13 1.71 7.95 -2.39 -0.02 1.69 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.10 5.08 7.63 -2.91 -0.02 5.06 16 31 H 0.11 6.06 6.16 -2.91 -0.02 6.04 16 32 H 0.30 12.89 8.29 -92.71 -0.77 12.12 16 33 H 0.11 5.11 8.06 -2.91 -0.02 5.08 16 34 H 0.12 5.13 7.59 -2.91 -0.02 5.11 16 35 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.12 0.70 7.93 -2.38 -0.02 0.68 16 Total: -1.00 -65.68 319.47 6.95 -58.73 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 1.08 Total: 27.30 kcal Atomic # 6 Polarization: -32.75 SS G_CDS: 3.48 Total: -29.26 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.24 Total: -38.22 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: 0.12 Total: -55.00 kcal Atomic # 14 Polarization: 34.43 SS G_CDS: 2.03 Total: 36.46 kcal Total: -65.68 6.95 -58.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873372494.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.216 kcal (2) G-P(sol) polarization free energy of solvation -65.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds