Wall clock time and date at job start Mon Mar 30 2020 01:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86804 * 119.99728 * 2 1 4 4 H 1.48499 * 109.47197 * 269.99974 * 3 2 1 5 5 H 1.48506 * 109.47141 * 30.00182 * 3 2 1 6 6 H 1.48498 * 109.46874 * 150.00159 * 3 2 1 7 7 C 1.39939 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00166 * 197.84598 * 7 2 1 9 9 C 1.41403 * 120.00028 * 17.84369 * 7 2 1 10 10 C 1.40714 * 120.24063 * 204.38644 * 9 7 2 11 11 C 1.37620 * 119.73878 * 180.02562 * 10 9 7 12 12 C 1.38627 * 120.25185 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.75330 * 179.97438 * 12 11 10 14 14 O 1.45199 * 109.47277 * 89.99573 * 13 12 11 15 15 C 1.34233 * 117.00007 * 180.02562 * 14 13 12 16 16 O 1.20824 * 120.00055 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99946 * 179.97438 * 15 14 13 18 18 O 1.42895 * 109.47247 * 180.02562 * 17 15 14 19 19 C 1.42901 * 114.00360 * 180.02562 * 18 17 15 20 20 C 1.53001 * 117.49994 * 218.62362 * 19 18 17 21 21 C 1.53001 * 117.50224 * 149.99988 * 19 18 17 22 22 C 1.38640 * 120.50285 * 0.25050 * 12 11 10 23 23 C 1.37617 * 120.24348 * 359.44930 * 22 12 11 24 24 H 0.96997 * 120.00535 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.13004 * 0.02562 * 10 9 7 26 26 H 1.08006 * 119.87289 * 180.02562 * 11 10 9 27 27 H 1.08997 * 109.47017 * 210.00019 * 13 12 11 28 28 H 1.08998 * 109.46985 * 329.99783 * 13 12 11 29 29 H 1.09006 * 109.47336 * 300.00758 * 17 15 14 30 30 H 1.09007 * 109.47242 * 60.00091 * 17 15 14 31 31 H 1.08997 * 115.54826 * 4.32954 * 19 18 17 32 32 H 1.09000 * 117.49593 * 359.97438 * 20 19 18 33 33 H 1.09002 * 117.49591 * 145.01713 * 20 19 18 34 34 H 1.08998 * 117.49957 * 214.98186 * 21 19 18 35 35 H 1.09005 * 117.49396 * 359.97438 * 21 19 18 36 36 H 1.07995 * 119.87855 * 179.70679 * 22 12 11 37 37 H 1.08008 * 120.12837 * 180.27402 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4395 2.6527 0.7001 6 1 3.5397 1.4402 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2861 9 6 1.3520 -2.4069 -0.3763 10 6 1.8259 -3.6498 0.0825 11 6 1.1799 -4.8065 -0.2901 12 6 0.0668 -4.7502 -1.1144 13 6 -0.6317 -6.0238 -1.5159 14 8 -1.6654 -6.3357 -0.5451 15 6 -2.3858 -7.4481 -0.7581 16 8 -2.1597 -8.1387 -1.7234 17 6 -3.4757 -7.8363 0.2075 18 8 -4.0921 -9.0482 -0.2321 19 6 -5.1456 -9.5062 0.6179 20 6 -5.2598 -11.0139 0.8518 21 6 -6.2836 -10.2969 -0.0307 22 6 -0.4055 -3.5316 -1.5770 23 6 0.2210 -2.3618 -1.2123 24 1 -0.4851 0.8400 0.0004 25 1 2.6931 -3.6960 0.7244 26 1 1.5415 -5.7617 0.0612 27 1 -1.0835 -5.8959 -2.4995 28 1 0.0911 -6.8389 -1.5514 29 1 -3.0470 -7.9858 1.1985 30 1 -4.2224 -7.0433 0.2506 31 1 -5.4000 -8.8471 1.4479 32 1 -4.5316 -11.6565 0.3569 33 1 -5.5893 -11.3469 1.8360 34 1 -7.2866 -10.1583 0.3729 35 1 -6.2289 -10.4674 -1.1059 36 1 -1.2706 -3.4999 -2.2226 37 1 -0.1511 -1.4132 -1.5702 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884657866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:55 Heat of formation + Delta-G solvation = -85.710159 kcal Electronic energy + Delta-G solvation = -19789.277273 eV Core-core repulsion = 16497.535077 eV Total energy + Delta-G solvation = -3291.742197 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.17827 -38.66237 -37.66736 -36.10929 -35.05000 -33.89263 -30.91786 -29.40261 -28.71008 -26.88189 -23.82013 -22.68194 -22.24610 -21.13311 -21.00415 -20.06478 -17.66146 -17.41623 -17.25114 -16.53154 -16.28952 -15.42815 -15.05302 -14.87142 -14.34065 -14.05322 -13.77239 -13.64049 -12.82364 -12.47087 -12.40835 -12.06182 -11.97263 -11.82369 -11.75287 -11.61989 -11.21335 -11.01772 -10.85145 -10.79973 -10.47498 -10.22404 -10.14485 -9.71341 -9.48718 -9.45479 -9.25008 -7.58738 -7.47675 -6.88829 -4.48769 2.21157 2.39451 2.75322 2.98646 3.01428 3.04419 3.11991 3.53386 3.76362 3.84128 4.48163 4.49677 4.64147 4.82483 4.96808 5.04633 5.08395 5.22490 5.35092 5.59590 5.63041 5.65268 5.68501 5.85260 6.04846 6.23267 6.29550 6.80655 6.82640 6.85810 6.95510 7.16151 7.24383 7.49561 7.71734 7.93740 7.98743 8.05200 8.17052 8.51807 8.76370 8.84519 10.04899 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.039386 B = 0.002753 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.740114 B =10166.758864 C =10463.332400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.118 3.882 10 C -0.230 4.230 11 C -0.063 4.063 12 C -0.237 4.237 13 C 0.138 3.862 14 O -0.348 6.348 15 C 0.456 3.544 16 O -0.502 6.502 17 C 0.070 3.930 18 O -0.337 6.337 19 C 0.013 3.987 20 C -0.187 4.187 21 C -0.182 4.182 22 C -0.075 4.075 23 C -0.171 4.171 24 H 0.283 0.717 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.884 -10.945 2.509 14.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.484 4.484 8 H 0.099 0.901 9 C 0.116 3.884 10 C -0.250 4.250 11 C -0.081 4.081 12 C -0.238 4.238 13 C 0.066 3.934 14 O -0.265 6.265 15 C 0.298 3.702 16 O -0.390 6.390 17 C -0.007 4.007 18 O -0.255 6.255 19 C -0.044 4.044 20 C -0.225 4.225 21 C -0.219 4.219 22 C -0.094 4.094 23 C -0.190 4.190 24 H 0.094 0.906 25 H 0.113 0.887 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.134 0.866 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.917 -11.050 2.045 14.345 hybrid contribution 0.255 0.838 0.172 0.893 sum -8.662 -10.212 2.217 13.573 Atomic orbital electron populations 1.69823 1.07685 1.29559 1.33835 1.25978 0.94771 1.01570 0.92123 0.86262 0.80499 0.80263 0.79456 1.19132 1.20199 1.18497 1.19695 0.98257 0.91230 1.39235 0.90117 1.17697 0.90796 0.92096 0.87857 1.20967 1.04152 0.92665 1.07200 1.20399 0.95085 0.96680 0.95975 1.18672 1.01274 0.91904 1.11978 1.21774 0.86293 0.96006 0.89321 1.86690 1.46162 1.40344 1.53349 1.23046 0.82147 0.79728 0.85310 1.90652 1.66772 1.52004 1.29540 1.21791 0.94117 0.88495 0.96332 1.87911 1.49331 1.39529 1.48728 1.22727 0.91499 0.93932 0.96292 1.23416 1.02484 0.95030 1.01537 1.23363 0.94507 1.03503 1.00522 1.20548 0.97680 0.92446 0.98688 1.21301 0.99707 0.96667 1.01333 0.90603 0.88676 0.89252 0.91887 0.91950 0.88733 0.88692 0.86625 0.87994 0.88040 0.87964 0.87970 0.89272 0.86204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.64 10.95 55.55 0.61 -19.03 16 2 C 0.07 1.81 5.14 -17.35 -0.09 1.72 16 3 Si 0.91 18.00 29.60 -169.99 -5.03 12.96 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.46 -11.71 9.05 -37.74 -0.34 -12.05 16 8 H 0.08 1.99 7.91 -52.48 -0.42 1.57 16 9 C 0.12 3.08 5.57 -106.82 -0.60 2.49 16 10 C -0.23 -5.54 9.80 -38.87 -0.38 -5.92 16 11 C -0.06 -1.40 9.67 -39.66 -0.38 -1.78 16 12 C -0.24 -5.21 5.54 -104.33 -0.58 -5.79 16 13 C 0.14 2.64 5.58 36.01 0.20 2.85 16 14 O -0.35 -6.43 10.20 -39.26 -0.40 -6.83 16 15 C 0.46 7.62 8.03 36.00 0.29 7.91 16 16 O -0.50 -9.86 16.25 -25.48 -0.41 -10.28 16 17 C 0.07 0.86 6.40 36.00 0.23 1.09 16 18 O -0.34 -4.50 10.13 -55.19 -0.56 -5.06 16 19 C 0.01 0.13 6.44 -26.73 -0.17 -0.05 16 20 C -0.19 -1.54 10.48 -26.73 -0.28 -1.82 16 21 C -0.18 -1.50 10.48 -26.73 -0.28 -1.78 16 22 C -0.07 -1.74 9.67 -39.66 -0.38 -2.12 16 23 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 24 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 25 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 26 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 27 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 28 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.12 0.80 7.93 -51.93 -0.41 0.39 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.12 3.13 6.16 -52.48 -0.32 2.80 16 LS Contribution 328.46 15.07 4.95 4.95 Total: -1.00 -29.57 328.46 -8.88 -38.44 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -4.93 Total: 4.79 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -3.10 Total: -19.95 kcal Atomic # 7 Polarization: -19.64 SS G_CDS: 0.61 Total: -19.03 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -1.37 Total: -22.17 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.57 -8.88 -38.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884657866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.268 kcal (2) G-P(sol) polarization free energy of solvation -29.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds