Wall clock time and date at job start Mon Mar 30 2020 01:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86804 * 119.99728 * 2 1 4 4 H 1.48499 * 109.47197 * 269.99974 * 3 2 1 5 5 H 1.48506 * 109.47141 * 30.00182 * 3 2 1 6 6 H 1.48498 * 109.46874 * 150.00159 * 3 2 1 7 7 C 1.39939 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00166 * 197.84598 * 7 2 1 9 9 C 1.41403 * 120.00028 * 17.84369 * 7 2 1 10 10 C 1.40714 * 120.24063 * 204.38644 * 9 7 2 11 11 C 1.37620 * 119.73878 * 180.02562 * 10 9 7 12 12 C 1.38627 * 120.25185 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.75330 * 179.97438 * 12 11 10 14 14 O 1.45199 * 109.47277 * 89.99573 * 13 12 11 15 15 C 1.34233 * 117.00007 * 180.02562 * 14 13 12 16 16 O 1.20824 * 120.00055 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99946 * 179.97438 * 15 14 13 18 18 O 1.42895 * 109.47247 * 180.02562 * 17 15 14 19 19 C 1.42901 * 114.00360 * 180.02562 * 18 17 15 20 20 C 1.53001 * 117.49994 * 218.62362 * 19 18 17 21 21 C 1.53001 * 117.50224 * 149.99988 * 19 18 17 22 22 C 1.38640 * 120.50285 * 0.25050 * 12 11 10 23 23 C 1.37617 * 120.24348 * 359.44930 * 22 12 11 24 24 H 0.96997 * 120.00535 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.13004 * 0.02562 * 10 9 7 26 26 H 1.08006 * 119.87289 * 180.02562 * 11 10 9 27 27 H 1.08997 * 109.47017 * 210.00019 * 13 12 11 28 28 H 1.08998 * 109.46985 * 329.99783 * 13 12 11 29 29 H 1.09006 * 109.47336 * 300.00758 * 17 15 14 30 30 H 1.09007 * 109.47242 * 60.00091 * 17 15 14 31 31 H 1.08997 * 115.54826 * 4.32954 * 19 18 17 32 32 H 1.09000 * 117.49593 * 359.97438 * 20 19 18 33 33 H 1.09002 * 117.49591 * 145.01713 * 20 19 18 34 34 H 1.08998 * 117.49957 * 214.98186 * 21 19 18 35 35 H 1.09005 * 117.49396 * 359.97438 * 21 19 18 36 36 H 1.07995 * 119.87855 * 179.70679 * 22 12 11 37 37 H 1.08008 * 120.12837 * 180.27402 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4395 2.6527 0.7001 6 1 3.5397 1.4402 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2861 9 6 1.3520 -2.4069 -0.3763 10 6 1.8259 -3.6498 0.0825 11 6 1.1799 -4.8065 -0.2901 12 6 0.0668 -4.7502 -1.1144 13 6 -0.6317 -6.0238 -1.5159 14 8 -1.6654 -6.3357 -0.5451 15 6 -2.3858 -7.4481 -0.7581 16 8 -2.1597 -8.1387 -1.7234 17 6 -3.4757 -7.8363 0.2075 18 8 -4.0921 -9.0482 -0.2321 19 6 -5.1456 -9.5062 0.6179 20 6 -5.2598 -11.0139 0.8518 21 6 -6.2836 -10.2969 -0.0307 22 6 -0.4055 -3.5316 -1.5770 23 6 0.2210 -2.3618 -1.2123 24 1 -0.4851 0.8400 0.0004 25 1 2.6931 -3.6960 0.7244 26 1 1.5415 -5.7617 0.0612 27 1 -1.0835 -5.8959 -2.4995 28 1 0.0911 -6.8389 -1.5514 29 1 -3.0470 -7.9858 1.1985 30 1 -4.2224 -7.0433 0.2506 31 1 -5.4000 -8.8471 1.4479 32 1 -4.5316 -11.6565 0.3569 33 1 -5.5893 -11.3469 1.8360 34 1 -7.2866 -10.1583 0.3729 35 1 -6.2289 -10.4674 -1.1059 36 1 -1.2706 -3.4999 -2.2226 37 1 -0.1511 -1.4132 -1.5702 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884657866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:55 Heat of formation + Delta-G solvation = -100.304717 kcal Electronic energy + Delta-G solvation = -19789.910141 eV Core-core repulsion = 16497.535077 eV Total energy + Delta-G solvation = -3292.375064 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.53868 -39.66877 -39.30282 -37.53039 -35.88006 -35.69602 -32.66849 -31.24481 -29.97164 -28.46597 -25.52945 -23.29167 -22.97406 -22.94388 -22.37776 -21.80663 -19.27656 -18.81256 -18.30389 -17.80803 -17.55030 -17.13903 -16.19406 -16.05912 -15.72132 -15.37827 -15.26819 -14.92104 -14.37457 -13.94041 -13.89224 -13.82196 -13.54406 -12.97770 -12.86339 -12.69487 -12.60008 -12.48425 -12.39513 -12.11179 -11.74518 -11.63003 -11.45508 -11.36429 -11.28713 -11.05169 -10.20660 -9.44914 -9.34463 -8.69373 -6.40448 0.67007 1.09175 1.10870 1.34120 1.39908 1.52502 1.62643 2.19327 2.61775 2.85878 2.90141 3.59334 3.78675 3.90211 4.00098 4.06614 4.08513 4.11738 4.23159 4.27874 4.46024 4.48741 4.54321 4.58727 4.77131 5.00270 5.01956 5.11480 5.24330 5.29507 5.38178 5.43480 5.64435 5.87350 6.04549 6.05030 6.13501 6.31128 6.63645 6.70904 6.87837 6.96297 8.27258 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.039386 B = 0.002753 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.740114 B =10166.758864 C =10463.332400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.035 3.965 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.492 4.492 8 H 0.080 0.920 9 C 0.087 3.913 10 C -0.245 4.245 11 C -0.064 4.064 12 C -0.231 4.231 13 C 0.141 3.859 14 O -0.356 6.356 15 C 0.455 3.545 16 O -0.536 6.536 17 C 0.077 3.923 18 O -0.371 6.371 19 C -0.003 4.003 20 C -0.186 4.186 21 C -0.182 4.182 22 C -0.080 4.080 23 C -0.194 4.194 24 H 0.291 0.709 25 H 0.104 0.896 26 H 0.119 0.881 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.145 0.855 32 H 0.086 0.914 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.765 -11.477 3.545 15.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.520 4.520 8 H 0.098 0.902 9 C 0.085 3.915 10 C -0.264 4.264 11 C -0.082 4.082 12 C -0.233 4.233 13 C 0.069 3.931 14 O -0.273 6.273 15 C 0.299 3.701 16 O -0.426 6.426 17 C 0.000 4.000 18 O -0.290 6.290 19 C -0.060 4.060 20 C -0.223 4.223 21 C -0.219 4.219 22 C -0.098 4.098 23 C -0.214 4.214 24 H 0.102 0.898 25 H 0.122 0.878 26 H 0.136 0.864 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.163 0.837 32 H 0.105 0.895 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.104 0.896 36 H 0.125 0.875 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.813 -11.604 3.091 15.508 hybrid contribution 0.431 0.811 -0.170 0.934 sum -9.382 -10.794 2.921 14.596 Atomic orbital electron populations 1.69866 1.09094 1.30913 1.34325 1.26826 0.95518 1.04711 0.91082 0.85156 0.79095 0.75635 0.79568 1.18689 1.19130 1.18082 1.19941 0.98544 0.92388 1.41155 0.90179 1.18057 0.91561 0.93236 0.88651 1.21181 1.04787 0.92811 1.07668 1.20716 0.94737 0.97347 0.95431 1.18962 1.01062 0.92649 1.10582 1.21604 0.86907 0.94929 0.89632 1.86646 1.46217 1.41490 1.52941 1.23967 0.82207 0.78382 0.85534 1.90638 1.67843 1.52823 1.31298 1.21929 0.93304 0.89159 0.95613 1.87858 1.50670 1.39968 1.50504 1.23132 0.90957 0.94963 0.96933 1.23492 1.02020 0.94162 1.02594 1.23450 0.95561 1.03050 0.99819 1.20782 0.97991 0.92331 0.98709 1.21276 1.00602 0.96937 1.02541 0.89826 0.87835 0.86353 0.91356 0.90840 0.85868 0.85993 0.83735 0.89542 0.85600 0.85540 0.89570 0.87534 0.87709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.72 10.95 21.82 0.24 -41.48 16 2 C 0.03 1.71 5.14 85.26 0.44 2.15 16 3 Si 0.99 37.01 29.60 68.60 2.03 39.04 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.27 -9.49 7.11 99.48 0.71 -8.79 16 6 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 7 C -0.49 -25.95 9.05 23.46 0.21 -25.74 16 8 H 0.08 4.06 7.91 -2.91 -0.02 4.03 16 9 C 0.09 4.67 5.57 -21.29 -0.12 4.55 16 10 C -0.25 -11.87 9.80 22.73 0.22 -11.65 16 11 C -0.06 -2.79 9.67 22.22 0.21 -2.57 16 12 C -0.23 -9.96 5.54 -19.68 -0.11 -10.07 16 13 C 0.14 5.22 5.58 71.24 0.40 5.61 16 14 O -0.36 -12.50 10.20 -51.44 -0.52 -13.02 16 15 C 0.46 14.46 8.03 71.24 0.57 15.03 16 16 O -0.54 -20.64 16.25 28.40 0.46 -20.18 16 17 C 0.08 1.67 6.40 71.24 0.46 2.12 16 18 O -0.37 -9.26 10.13 -129.90 -1.32 -10.57 16 19 C 0.00 -0.05 6.44 30.59 0.20 0.15 16 20 C -0.19 -2.66 10.48 30.59 0.32 -2.34 16 21 C -0.18 -2.63 10.48 30.59 0.32 -2.31 16 22 C -0.08 -3.70 9.67 22.22 0.21 -3.48 16 23 C -0.19 -10.14 8.70 22.73 0.20 -9.95 16 24 H 0.29 13.34 8.30 -92.71 -0.77 12.57 16 25 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 26 H 0.12 4.39 8.06 -2.91 -0.02 4.36 16 27 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 28 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 29 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.15 1.45 7.93 -2.39 -0.02 1.43 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 37 H 0.10 5.69 6.16 -2.91 -0.02 5.67 16 Total: -1.00 -65.22 328.46 5.49 -59.72 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 1.07 Total: 24.98 kcal Atomic # 6 Polarization: -42.04 SS G_CDS: 3.54 Total: -38.50 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.24 Total: -41.48 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -1.38 Total: -43.77 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 2.03 Total: 39.04 kcal Total: -65.22 5.49 -59.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884657866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.581 kcal (2) G-P(sol) polarization free energy of solvation -65.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds