Wall clock time and date at job start Mon Mar 30 2020 01:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46931 * 2 1 4 4 C 1.46492 * 120.00192 * 269.99978 * 3 2 1 5 5 C 1.50702 * 109.46970 * 269.99926 * 4 3 2 6 6 H 1.07993 * 120.00404 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99657 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00390 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99833 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46562 * 60.00135 * 9 7 5 11 11 H 1.48502 * 109.46909 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46937 * 300.00272 * 9 7 5 13 13 C 1.38007 * 119.99880 * 89.99861 * 3 2 1 14 14 N 1.28895 * 124.81293 * 0.02562 * 13 3 2 15 15 C 1.34814 * 117.87941 * 179.97438 * 14 13 3 16 16 C 1.39819 * 112.87413 * 0.02562 * 15 14 13 17 17 C 1.39214 * 120.40513 * 179.97438 * 16 15 14 18 18 C 1.37765 * 120.20498 * 0.02562 * 17 16 15 19 19 C 1.38673 * 119.97238 * 359.78986 * 18 17 16 20 20 C 1.37241 * 120.59888 * 0.44457 * 19 18 17 21 21 C 1.50703 * 119.78397 * 179.80898 * 20 19 18 22 22 S 1.75799 * 124.81415 * 179.97438 * 13 3 2 23 23 H 1.08994 * 109.46881 * 299.99848 * 1 2 3 24 24 H 1.08999 * 109.46659 * 60.00181 * 1 2 3 25 25 H 1.09001 * 109.46733 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47417 * 240.00281 * 2 1 3 27 27 H 1.09005 * 109.46983 * 120.00086 * 2 1 3 28 28 H 1.09004 * 109.47266 * 29.99993 * 4 3 2 29 29 H 1.09002 * 109.47033 * 150.00253 * 4 3 2 30 30 H 0.96993 * 119.99997 * 180.02562 * 8 7 5 31 31 H 1.08001 * 119.89857 * 179.97438 * 17 16 15 32 32 H 1.07994 * 120.01682 * 179.97438 * 18 17 16 33 33 H 1.08007 * 119.70331 * 180.25564 * 19 18 17 34 34 H 1.09002 * 109.47152 * 269.72499 * 21 20 19 35 35 H 1.09001 * 109.46980 * 149.72599 * 21 20 19 36 36 H 1.09004 * 109.47113 * 29.72580 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7036 6 1 4.3429 1.2310 -1.0957 7 6 4.1491 2.3898 -2.8778 8 7 3.3491 3.1259 -3.6180 9 14 5.9132 2.0958 -3.4174 10 1 6.1402 0.6389 -3.5947 11 1 6.1603 2.7949 -4.7040 12 1 6.8410 2.6191 -2.3828 13 6 2.2483 2.0318 1.1952 14 7 2.0659 1.5145 2.3616 15 6 2.3363 2.2780 3.4392 16 6 2.7877 3.5570 3.0996 17 6 3.1125 4.4765 4.0931 18 6 2.9920 4.1327 5.4218 19 6 2.5418 2.8688 5.7723 20 6 2.2218 1.9484 4.8059 21 6 1.7384 0.5786 5.2076 22 16 2.8328 3.6832 1.3428 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.5817 1.6877 -2.0283 29 1 2.0955 3.1411 -1.1382 30 1 3.6749 3.5157 -4.4442 31 1 3.4608 5.4621 3.8216 32 1 3.2452 4.8482 6.1900 33 1 2.4451 2.6053 6.8152 34 1 2.5908 -0.0939 5.3034 35 1 1.0575 0.1962 4.4471 36 1 1.2171 0.6429 6.1627 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892786988.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:35 Heat of formation + Delta-G solvation = 46.315974 kcal Electronic energy + Delta-G solvation = -18732.614963 eV Core-core repulsion = 15921.643472 eV Total energy + Delta-G solvation = -2810.971492 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.74644 -37.59639 -35.27592 -32.90998 -32.45884 -30.61624 -29.11544 -27.13575 -26.15940 -24.01547 -23.32741 -22.18730 -20.96526 -19.46778 -17.54994 -16.69737 -16.29973 -15.82877 -15.08664 -14.65903 -14.56185 -14.15467 -13.95872 -13.37842 -13.01055 -12.98920 -12.58574 -12.21558 -12.11071 -11.95859 -11.81513 -11.49105 -11.34316 -11.23718 -11.02733 -10.84398 -10.55732 -10.27822 -10.16711 -9.91438 -9.38460 -8.91407 -8.83745 -8.63811 -7.54534 -6.89330 -6.22063 -4.33478 1.19763 1.51715 1.71239 2.37803 3.02074 3.22314 3.26849 3.29967 3.60970 4.13354 4.29281 4.82482 5.03913 5.08925 5.17889 5.47696 5.50444 5.62506 5.68724 5.72643 5.81884 5.88761 5.92547 6.01039 6.18784 6.25494 6.39611 6.49845 6.57759 6.62330 6.76641 6.82350 6.99478 7.12092 7.47326 7.72469 7.91269 7.92850 8.47376 8.74175 9.34394 10.81816 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.020271 B = 0.005676 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.962527 B = 4932.104414 C = 5717.968079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.127 3.873 3 N -0.548 5.548 4 C 0.246 3.754 5 C -0.542 4.542 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.890 5.890 9 Si 0.900 3.100 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.405 3.595 14 N -0.581 5.581 15 C 0.152 3.848 16 C -0.218 4.218 17 C -0.059 4.059 18 C -0.144 4.144 19 C -0.104 4.104 20 C -0.072 4.072 21 C -0.101 4.101 22 S 0.059 5.941 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.038 0.962 30 H 0.268 0.732 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.432 -1.319 13.022 13.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.001 3.999 3 N -0.260 5.260 4 C 0.127 3.873 5 C -0.581 4.581 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.528 5.528 9 Si 0.727 3.273 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.029 3.971 14 N -0.310 5.310 15 C 0.030 3.970 16 C -0.339 4.339 17 C -0.082 4.082 18 C -0.165 4.165 19 C -0.125 4.125 20 C -0.076 4.076 21 C -0.158 4.158 22 S 0.310 5.690 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.397 -1.067 11.789 12.315 hybrid contribution 0.942 -0.259 0.288 1.019 sum -2.455 -1.326 12.077 12.395 Atomic orbital electron populations 1.22138 0.96602 1.01413 1.02108 1.21395 0.93563 0.81985 1.02948 1.46923 1.63862 1.13056 1.02207 1.19598 0.97519 0.92449 0.77708 1.21402 0.96341 1.33220 1.07113 0.91899 1.24923 0.98168 0.94477 0.95979 1.69906 1.35911 1.32673 1.14293 0.86517 0.84237 0.78583 0.77989 1.20027 1.20991 1.19908 1.23861 0.92301 0.91513 0.89384 1.66341 1.33618 1.35168 0.95857 1.18662 0.97469 0.88305 0.92594 1.23643 1.12657 0.99849 0.97702 1.20167 0.99027 0.97684 0.91331 1.20771 1.03718 0.96989 0.95065 1.20632 1.00191 0.93383 0.98333 1.19298 1.02158 0.96945 0.89233 1.20604 1.00980 0.93170 1.01013 1.85457 1.71817 1.14165 0.97542 0.92647 0.92562 0.92137 0.90012 0.90572 0.93412 0.94442 0.92274 0.86287 0.85915 0.85979 0.91773 0.91046 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 10.24 37.16 0.38 -2.12 16 2 C 0.13 2.25 6.24 -4.04 -0.03 2.22 16 3 N -0.55 -11.56 2.54 -176.27 -0.45 -12.01 16 4 C 0.25 5.90 5.14 -5.20 -0.03 5.87 16 5 C -0.54 -14.20 9.39 -34.44 -0.32 -14.52 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 8 N -0.89 -24.54 13.29 55.43 0.74 -23.80 16 9 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 C 0.40 8.57 7.87 -88.91 -0.70 7.87 16 14 N -0.58 -11.77 9.49 -11.16 -0.11 -11.87 16 15 C 0.15 2.88 6.71 -84.90 -0.57 2.31 16 16 C -0.22 -4.05 6.52 -38.63 -0.25 -4.30 16 17 C -0.06 -0.91 10.06 -39.39 -0.40 -1.30 16 18 C -0.14 -1.89 10.05 -39.59 -0.40 -2.29 16 19 C -0.10 -1.39 9.62 -39.78 -0.38 -1.77 16 20 C -0.07 -1.14 5.93 -103.91 -0.62 -1.76 16 21 C -0.10 -1.32 9.94 36.01 0.36 -0.97 16 22 S 0.06 1.20 21.89 -107.50 -2.35 -1.15 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 27 H 0.08 1.33 7.60 -51.93 -0.39 0.94 16 28 H 0.05 1.17 8.07 -51.93 -0.42 0.75 16 29 H 0.04 0.95 7.04 -51.93 -0.37 0.59 16 30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.02 7.91 -51.93 -0.41 0.61 16 36 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 LS Contribution 320.86 15.07 4.84 4.84 Total: -1.00 -28.34 320.86 -10.34 -38.68 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -4.93 Total: -1.33 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -3.05 Total: -9.04 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.18 Total: -47.68 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.35 Total: -1.15 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.34 -10.34 -38.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892786988.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.996 kcal (2) G-P(sol) polarization free energy of solvation -28.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds