Wall clock time and date at job start Mon Mar 30 2020 01:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46931 * 2 1 4 4 C 1.46492 * 120.00192 * 269.99978 * 3 2 1 5 5 C 1.50702 * 109.46970 * 269.99926 * 4 3 2 6 6 H 1.07993 * 120.00404 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99657 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00390 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99833 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46562 * 60.00135 * 9 7 5 11 11 H 1.48502 * 109.46909 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46937 * 300.00272 * 9 7 5 13 13 C 1.38007 * 119.99880 * 89.99861 * 3 2 1 14 14 N 1.28895 * 124.81293 * 0.02562 * 13 3 2 15 15 C 1.34814 * 117.87941 * 179.97438 * 14 13 3 16 16 C 1.39819 * 112.87413 * 0.02562 * 15 14 13 17 17 C 1.39214 * 120.40513 * 179.97438 * 16 15 14 18 18 C 1.37765 * 120.20498 * 0.02562 * 17 16 15 19 19 C 1.38673 * 119.97238 * 359.78986 * 18 17 16 20 20 C 1.37241 * 120.59888 * 0.44457 * 19 18 17 21 21 C 1.50703 * 119.78397 * 179.80898 * 20 19 18 22 22 S 1.75799 * 124.81415 * 179.97438 * 13 3 2 23 23 H 1.08994 * 109.46881 * 299.99848 * 1 2 3 24 24 H 1.08999 * 109.46659 * 60.00181 * 1 2 3 25 25 H 1.09001 * 109.46733 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47417 * 240.00281 * 2 1 3 27 27 H 1.09005 * 109.46983 * 120.00086 * 2 1 3 28 28 H 1.09004 * 109.47266 * 29.99993 * 4 3 2 29 29 H 1.09002 * 109.47033 * 150.00253 * 4 3 2 30 30 H 0.96993 * 119.99997 * 180.02562 * 8 7 5 31 31 H 1.08001 * 119.89857 * 179.97438 * 17 16 15 32 32 H 1.07994 * 120.01682 * 179.97438 * 18 17 16 33 33 H 1.08007 * 119.70331 * 180.25564 * 19 18 17 34 34 H 1.09002 * 109.47152 * 269.72499 * 21 20 19 35 35 H 1.09001 * 109.46980 * 149.72599 * 21 20 19 36 36 H 1.09004 * 109.47113 * 29.72580 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7036 6 1 4.3429 1.2310 -1.0957 7 6 4.1491 2.3898 -2.8778 8 7 3.3491 3.1259 -3.6180 9 14 5.9132 2.0958 -3.4174 10 1 6.1402 0.6389 -3.5947 11 1 6.1603 2.7949 -4.7040 12 1 6.8410 2.6191 -2.3828 13 6 2.2483 2.0318 1.1952 14 7 2.0659 1.5145 2.3616 15 6 2.3363 2.2780 3.4392 16 6 2.7877 3.5570 3.0996 17 6 3.1125 4.4765 4.0931 18 6 2.9920 4.1327 5.4218 19 6 2.5418 2.8688 5.7723 20 6 2.2218 1.9484 4.8059 21 6 1.7384 0.5786 5.2076 22 16 2.8328 3.6832 1.3428 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.5817 1.6877 -2.0283 29 1 2.0955 3.1411 -1.1382 30 1 3.6749 3.5157 -4.4442 31 1 3.4608 5.4621 3.8216 32 1 3.2452 4.8482 6.1900 33 1 2.4451 2.6053 6.8152 34 1 2.5908 -0.0939 5.3034 35 1 1.0575 0.1962 4.4471 36 1 1.2171 0.6429 6.1627 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892786988.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:35 Heat of formation + Delta-G solvation = 32.753478 kcal Electronic energy + Delta-G solvation = -18733.203077 eV Core-core repulsion = 15921.643472 eV Total energy + Delta-G solvation = -2811.559606 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.08262 -39.07052 -36.71625 -34.85630 -33.60740 -32.08599 -30.56762 -28.74415 -27.43671 -25.47376 -25.04564 -23.57820 -22.24504 -20.92513 -19.00644 -18.64388 -17.78259 -17.27298 -16.59529 -16.17393 -16.06732 -15.45818 -15.36193 -14.83372 -14.49224 -14.21463 -14.05344 -13.71895 -13.51283 -13.23656 -13.15485 -13.11118 -12.76843 -12.64538 -12.57907 -12.34635 -12.22006 -11.87470 -11.80014 -11.56154 -10.73958 -10.67265 -10.43782 -10.32698 -8.93654 -8.50444 -8.13359 -6.43381 -0.15822 0.21994 0.31041 0.92592 1.38120 1.39566 1.47387 1.64094 2.02148 2.37238 2.87189 3.02700 3.49261 3.85188 4.09713 4.16380 4.35449 4.42080 4.45555 4.51358 4.60385 4.72917 4.83166 4.87495 4.89115 4.96728 4.96910 5.02710 5.27919 5.32867 5.39345 5.48820 5.56038 5.62366 5.84952 5.92747 6.05126 6.34509 6.64027 6.99376 7.28410 8.78226 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.020271 B = 0.005676 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.962527 B = 4932.104414 C = 5717.968079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.125 3.875 3 N -0.560 5.560 4 C 0.265 3.735 5 C -0.550 4.550 6 H 0.051 0.949 7 C 0.024 3.976 8 N -0.919 5.919 9 Si 0.959 3.041 10 H -0.267 1.267 11 H -0.277 1.277 12 H -0.275 1.275 13 C 0.387 3.613 14 N -0.577 5.577 15 C 0.108 3.892 16 C -0.225 4.225 17 C -0.077 4.077 18 C -0.120 4.120 19 C -0.095 4.095 20 C -0.081 4.081 21 C -0.097 4.097 22 S 0.008 5.992 23 H 0.043 0.957 24 H 0.048 0.952 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.036 0.964 29 H 0.017 0.983 30 H 0.270 0.730 31 H 0.135 0.865 32 H 0.167 0.833 33 H 0.167 0.833 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.948 -1.563 16.038 16.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.001 3.999 3 N -0.275 5.275 4 C 0.144 3.856 5 C -0.589 4.589 6 H 0.069 0.931 7 C -0.177 4.177 8 N -0.557 5.557 9 Si 0.783 3.217 10 H -0.192 1.192 11 H -0.201 1.201 12 H -0.201 1.201 13 C 0.011 3.989 14 N -0.306 5.306 15 C -0.012 4.012 16 C -0.345 4.345 17 C -0.100 4.100 18 C -0.141 4.141 19 C -0.116 4.116 20 C -0.085 4.085 21 C -0.154 4.154 22 S 0.259 5.741 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.110 0.890 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.054 0.946 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.153 0.847 32 H 0.185 0.815 33 H 0.184 0.816 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.923 -1.325 14.861 15.204 hybrid contribution 0.783 -0.133 -0.369 0.876 sum -2.140 -1.458 14.492 14.722 Atomic orbital electron populations 1.22029 0.94650 1.03142 1.01124 1.21531 0.95125 0.80439 1.02798 1.46754 1.65366 1.13990 1.01373 1.19123 0.96176 0.91477 0.78803 1.21574 0.97270 1.32914 1.07106 0.93057 1.25663 1.01819 0.94194 0.96014 1.69998 1.37561 1.33477 1.14701 0.85595 0.79647 0.78795 0.77635 1.19222 1.20148 1.20052 1.23918 0.93686 0.91613 0.89668 1.66301 1.32800 1.35540 0.95994 1.19148 0.99746 0.88698 0.93604 1.23774 1.13699 1.00738 0.96262 1.20568 0.99500 0.98040 0.91845 1.21347 1.00434 0.97625 0.94745 1.21189 0.97893 0.92599 0.99892 1.19786 1.01758 0.98742 0.88173 1.20628 1.01029 0.91767 1.01988 1.85417 1.72698 1.15133 1.00874 0.93738 0.93289 0.88953 0.90160 0.90525 0.94587 0.96544 0.92070 0.84680 0.81534 0.81600 0.91214 0.92931 0.88977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.64 10.24 71.98 0.74 -3.90 16 2 C 0.13 4.58 6.24 86.38 0.54 5.12 16 3 N -0.56 -24.82 2.54 -711.59 -1.81 -26.63 16 4 C 0.26 13.37 5.14 85.64 0.44 13.81 16 5 C -0.55 -29.86 9.39 25.60 0.24 -29.62 16 6 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 7 C 0.02 1.30 5.46 84.65 0.46 1.76 16 8 N -0.92 -51.92 13.29 21.45 0.28 -51.63 16 9 Si 0.96 42.99 29.54 68.60 2.03 45.01 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 13 C 0.39 17.13 7.87 179.75 1.41 18.54 16 14 N -0.58 -23.98 9.49 -189.23 -1.80 -25.78 16 15 C 0.11 4.07 6.71 39.76 0.27 4.34 16 16 C -0.23 -8.36 6.52 22.89 0.15 -8.21 16 17 C -0.08 -2.19 10.06 22.39 0.23 -1.97 16 18 C -0.12 -2.60 10.05 22.26 0.22 -2.38 16 19 C -0.10 -2.08 9.62 22.14 0.21 -1.86 16 20 C -0.08 -2.34 5.93 -19.41 -0.12 -2.45 16 21 C -0.10 -2.30 9.94 71.24 0.71 -1.59 16 22 S 0.01 0.36 21.89 -56.49 -1.24 -0.88 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.08 2.90 8.07 -2.39 -0.02 2.88 16 27 H 0.08 2.75 7.60 -2.38 -0.02 2.73 16 28 H 0.04 1.87 8.07 -2.39 -0.02 1.85 16 29 H 0.02 0.90 7.04 -2.39 -0.02 0.89 16 30 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 32 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 33 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 1.44 7.91 -2.39 -0.02 1.42 16 36 H 0.09 1.54 8.08 -2.38 -0.02 1.52 16 Total: -1.00 -63.87 320.86 4.04 -59.83 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 1.07 Total: 8.48 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 5.50 Total: -8.41 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -3.32 Total: -104.03 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -1.24 Total: -0.88 kcal Total: -63.87 4.04 -59.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892786988.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.587 kcal (2) G-P(sol) polarization free energy of solvation -63.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds