Wall clock time and date at job start Mon Mar 30 2020 01:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 7 12 12 O 1.20824 * 120.00141 * 0.02562 * 11 10 9 13 13 O 1.34226 * 119.99900 * 180.02562 * 11 10 9 14 14 C 1.45203 * 116.99798 * 179.97438 * 13 11 10 15 15 H 1.08995 * 113.00088 * 18.17177 * 14 13 11 16 16 C 1.54033 * 113.81401 * 246.18413 * 14 13 11 17 17 O 1.44180 * 85.51721 * 268.35263 * 16 14 13 18 18 C 1.44176 * 93.34080 * 335.80859 * 17 16 14 19 19 H 1.09002 * 113.86190 * 270.04159 * 18 17 16 20 20 C 1.50698 * 113.86277 * 138.33775 * 18 17 16 21 21 C 1.38238 * 120.00319 * 348.85929 * 20 18 17 22 22 C 1.38233 * 120.00066 * 179.74137 * 21 20 18 23 23 C 1.38241 * 119.99769 * 0.52825 * 22 21 20 24 24 C 1.38230 * 119.99848 * 359.74599 * 23 22 21 25 25 C 1.38230 * 120.00257 * 359.97438 * 24 23 22 26 26 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 28 28 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 31 31 H 1.08995 * 113.86675 * 22.49819 * 16 14 13 32 32 H 1.09000 * 113.86520 * 154.20908 * 16 14 13 33 33 H 1.08002 * 119.99909 * 359.97438 * 21 20 18 34 34 H 1.07996 * 120.00254 * 180.28939 * 22 21 20 35 35 H 1.08005 * 119.99653 * 179.76484 * 23 22 21 36 36 H 1.08002 * 119.99542 * 179.97438 * 24 23 22 37 37 H 1.08006 * 119.99811 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9672 0.0012 12 8 0.2836 -4.9672 0.0011 13 8 2.1630 -6.1296 0.0018 14 6 1.3722 -7.3474 0.0030 15 1 0.3407 -7.1856 -0.3097 16 6 1.5111 -8.1779 1.2927 17 8 2.5769 -8.8615 0.6031 18 6 2.0567 -8.5342 -0.7011 19 1 1.3603 -9.2737 -1.0964 20 6 3.1140 -8.1264 -1.6944 21 6 4.4030 -7.8697 -1.2658 22 6 5.3741 -7.5009 -2.1778 23 6 5.0536 -7.3781 -3.5169 24 6 3.7634 -7.6293 -3.9447 25 6 2.7937 -8.0037 -3.0335 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8902 29 1 2.8720 -3.6043 -0.8894 30 1 2.8720 -3.6043 0.8905 31 1 1.8432 -7.6005 2.1555 32 1 0.6482 -8.8087 1.5062 33 1 4.6521 -7.9610 -0.2189 34 1 6.3821 -7.3049 -1.8436 35 1 5.8115 -7.0862 -4.2289 36 1 3.5130 -7.5329 -4.9909 37 1 1.7857 -8.2004 -3.3679 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893649055.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:10 Heat of formation + Delta-G solvation = -75.513855 kcal Electronic energy + Delta-G solvation = -20847.522312 eV Core-core repulsion = 17556.222261 eV Total energy + Delta-G solvation = -3291.300052 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.19453 -39.48260 -38.61940 -35.80542 -33.61372 -31.86845 -31.19861 -30.89515 -29.04715 -26.33062 -26.03102 -22.94017 -22.47867 -21.93031 -20.40506 -19.64155 -17.71215 -17.29596 -16.56570 -16.34807 -16.17120 -15.60925 -15.56830 -14.76547 -14.57230 -14.44708 -14.33382 -13.59609 -13.37279 -12.86462 -12.72892 -12.55983 -12.27051 -12.06546 -11.33830 -11.25777 -11.08653 -10.95658 -10.75002 -10.64276 -10.45118 -10.16312 -10.06712 -9.95604 -9.57057 -9.21398 -8.91684 -8.73932 -8.39240 -6.03168 -4.08222 1.25058 1.41437 2.70744 2.74794 3.31975 3.36478 3.38263 3.45371 3.79523 4.13501 4.42527 4.46122 4.81689 4.91576 4.98766 5.02765 5.06458 5.12132 5.21499 5.32280 5.43656 5.50206 5.70430 5.75198 5.81849 5.91346 6.06863 6.08548 6.17010 6.41986 6.50943 6.57606 6.62914 6.86668 6.96789 7.63522 7.70076 7.95535 8.19807 8.35892 8.98386 9.55938 11.07823 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019185 B = 0.004248 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.144433 B = 6590.167307 C = 7463.283258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.034 3.966 10 C -0.101 4.101 11 C 0.456 3.544 12 O -0.504 6.504 13 O -0.330 6.330 14 C 0.021 3.979 15 H 0.101 0.899 16 C 0.028 3.972 17 O -0.364 6.364 18 C 0.110 3.890 19 H 0.116 0.884 20 C -0.085 4.085 21 C -0.080 4.080 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.123 4.123 25 C -0.109 4.109 26 H 0.263 0.737 27 H 0.025 0.975 28 H 0.026 0.974 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.128 0.872 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.813 -18.835 -3.632 20.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.003 4.003 10 C -0.139 4.139 11 C 0.299 3.701 12 O -0.390 6.390 13 O -0.247 6.247 14 C -0.035 4.035 15 H 0.119 0.881 16 C -0.049 4.049 17 O -0.283 6.283 18 C 0.052 3.948 19 H 0.133 0.867 20 C -0.085 4.085 21 C -0.098 4.098 22 C -0.141 4.141 23 C -0.135 4.135 24 C -0.141 4.141 25 C -0.127 4.127 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.499 -18.876 -3.538 20.274 hybrid contribution 0.077 0.999 -0.036 1.002 sum 6.576 -17.877 -3.574 19.381 Atomic orbital electron populations 1.69978 1.06105 1.26903 1.49828 1.25009 0.94848 0.99314 0.95056 0.86601 0.79522 0.82864 0.78670 1.20149 1.21226 1.20136 1.21107 0.93037 0.90608 1.51982 0.92358 1.19014 0.93179 0.89246 0.98856 1.21778 1.00686 0.87349 1.04076 1.24972 0.88087 0.85835 0.71169 1.90621 1.15867 1.87319 1.45162 1.86719 1.40225 1.13696 1.84056 1.25466 0.97252 0.84639 0.96168 0.88129 1.24382 0.91084 0.92646 0.96786 1.89722 1.43990 1.77948 1.16632 1.22629 0.93241 0.93433 0.85489 0.86696 1.19412 0.94568 1.01358 0.93151 1.20957 0.92138 0.96560 1.00113 1.21168 0.99502 1.00105 0.93336 1.21182 0.96622 0.99656 0.96029 1.21047 0.93326 1.00238 0.99463 1.20845 0.99476 1.00161 0.92223 0.92773 0.95622 0.95595 0.88900 0.88887 0.87963 0.88460 0.85369 0.85981 0.86144 0.85984 0.86136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.90 4.26 -27.88 -0.12 0.78 16 10 C -0.10 -2.09 5.75 -27.88 -0.16 -2.25 16 11 C 0.46 8.97 7.96 36.01 0.29 9.25 16 12 O -0.50 -11.26 15.16 -18.75 -0.28 -11.54 16 13 O -0.33 -5.51 9.25 -43.37 -0.40 -5.91 16 14 C 0.02 0.29 4.37 -25.65 -0.11 0.18 16 15 H 0.10 1.39 7.07 -51.93 -0.37 1.02 16 16 C 0.03 0.31 9.06 37.61 0.34 0.65 16 17 O -0.36 -4.66 11.16 -44.58 -0.50 -5.16 16 18 C 0.11 1.29 4.74 -27.43 -0.13 1.16 16 19 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 20 C -0.08 -1.08 4.75 -104.62 -0.50 -1.57 16 21 C -0.08 -1.03 9.24 -39.58 -0.37 -1.39 16 22 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 23 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 24 C -0.12 -1.35 10.05 -39.59 -0.40 -1.74 16 25 C -0.11 -1.27 9.74 -39.59 -0.39 -1.66 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 28 H 0.03 0.74 8.10 -51.93 -0.42 0.31 16 29 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 30 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 31 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.13 1.67 7.32 -52.49 -0.38 1.28 16 34 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 323.85 15.07 4.88 4.88 Total: -1.00 -32.94 323.85 -8.27 -41.22 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.94 Total: -0.11 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -2.75 Total: -13.56 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.74 Total: -26.20 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -1.18 Total: -22.62 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.94 -8.27 -41.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893649055.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.298 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds