Wall clock time and date at job start Mon Mar 30 2020 01:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 7 12 12 O 1.20824 * 120.00141 * 0.02562 * 11 10 9 13 13 O 1.34226 * 119.99900 * 180.02562 * 11 10 9 14 14 C 1.45203 * 116.99798 * 179.97438 * 13 11 10 15 15 H 1.08995 * 113.00088 * 18.17177 * 14 13 11 16 16 C 1.54033 * 113.81401 * 246.18413 * 14 13 11 17 17 O 1.44180 * 85.51721 * 268.35263 * 16 14 13 18 18 C 1.44176 * 93.34080 * 335.80859 * 17 16 14 19 19 H 1.09002 * 113.86190 * 270.04159 * 18 17 16 20 20 C 1.50698 * 113.86277 * 138.33775 * 18 17 16 21 21 C 1.38238 * 120.00319 * 348.85929 * 20 18 17 22 22 C 1.38233 * 120.00066 * 179.74137 * 21 20 18 23 23 C 1.38241 * 119.99769 * 0.52825 * 22 21 20 24 24 C 1.38230 * 119.99848 * 359.74599 * 23 22 21 25 25 C 1.38230 * 120.00257 * 359.97438 * 24 23 22 26 26 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 28 28 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 31 31 H 1.08995 * 113.86675 * 22.49819 * 16 14 13 32 32 H 1.09000 * 113.86520 * 154.20908 * 16 14 13 33 33 H 1.08002 * 119.99909 * 359.97438 * 21 20 18 34 34 H 1.07996 * 120.00254 * 180.28939 * 22 21 20 35 35 H 1.08005 * 119.99653 * 179.76484 * 23 22 21 36 36 H 1.08002 * 119.99542 * 179.97438 * 24 23 22 37 37 H 1.08006 * 119.99811 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9672 0.0012 12 8 0.2836 -4.9672 0.0011 13 8 2.1630 -6.1296 0.0018 14 6 1.3722 -7.3474 0.0030 15 1 0.3407 -7.1856 -0.3097 16 6 1.5111 -8.1779 1.2927 17 8 2.5769 -8.8615 0.6031 18 6 2.0567 -8.5342 -0.7011 19 1 1.3603 -9.2737 -1.0964 20 6 3.1140 -8.1264 -1.6944 21 6 4.4030 -7.8697 -1.2658 22 6 5.3741 -7.5009 -2.1778 23 6 5.0536 -7.3781 -3.5169 24 6 3.7634 -7.6293 -3.9447 25 6 2.7937 -8.0037 -3.0335 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8902 29 1 2.8720 -3.6043 -0.8894 30 1 2.8720 -3.6043 0.8905 31 1 1.8432 -7.6005 2.1555 32 1 0.6482 -8.8087 1.5062 33 1 4.6521 -7.9610 -0.2189 34 1 6.3821 -7.3049 -1.8436 35 1 5.8115 -7.0862 -4.2289 36 1 3.5130 -7.5329 -4.9909 37 1 1.7857 -8.2004 -3.3679 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893649055.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:09 Heat of formation + Delta-G solvation = -94.254603 kcal Electronic energy + Delta-G solvation = -20848.334972 eV Core-core repulsion = 17556.222261 eV Total energy + Delta-G solvation = -3292.112711 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.29797 -40.85300 -39.51818 -37.26290 -35.67228 -33.19695 -32.72543 -31.75356 -30.14598 -27.98968 -27.19810 -24.60060 -23.43533 -22.95964 -21.88656 -20.92799 -19.24476 -18.43338 -18.06593 -17.66461 -17.35029 -16.85050 -16.61778 -16.48351 -16.14306 -15.49940 -15.26908 -14.88123 -14.37457 -14.24613 -14.17146 -13.96216 -13.56210 -13.28966 -13.23940 -12.80970 -12.56361 -12.28180 -12.03274 -11.96253 -11.80423 -11.73436 -11.54407 -11.47060 -11.34634 -10.96576 -10.57868 -9.79108 -9.62828 -8.20808 -6.34780 0.37018 0.53553 1.14923 1.41633 1.46985 1.48489 1.55432 2.40472 2.47228 2.87629 3.12985 3.17221 3.55454 3.72922 3.99218 4.05690 4.12249 4.21912 4.23718 4.32260 4.35568 4.39448 4.56710 4.60432 4.67126 4.82006 4.91182 4.95806 5.07013 5.20503 5.33037 5.44791 5.52339 5.56908 5.64761 5.72283 5.78568 6.11628 6.12209 6.73073 6.83367 7.35526 8.91583 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019185 B = 0.004248 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.144433 B = 6590.167307 C = 7463.283258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.075 0.925 9 C 0.041 3.959 10 C -0.093 4.093 11 C 0.466 3.534 12 O -0.538 6.538 13 O -0.325 6.325 14 C 0.001 3.999 15 H 0.097 0.903 16 C 0.036 3.964 17 O -0.379 6.379 18 C 0.119 3.881 19 H 0.148 0.852 20 C -0.105 4.105 21 C -0.100 4.100 22 C -0.132 4.132 23 C -0.122 4.122 24 C -0.130 4.130 25 C -0.120 4.120 26 H 0.264 0.736 27 H -0.010 1.010 28 H -0.008 1.008 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.132 0.868 33 H 0.119 0.881 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.436 -19.248 -4.175 21.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.093 0.907 9 C 0.004 3.996 10 C -0.130 4.130 11 C 0.311 3.689 12 O -0.427 6.427 13 O -0.242 6.242 14 C -0.055 4.055 15 H 0.115 0.885 16 C -0.040 4.040 17 O -0.299 6.299 18 C 0.062 3.938 19 H 0.165 0.835 20 C -0.105 4.105 21 C -0.118 4.118 22 C -0.150 4.150 23 C -0.140 4.140 24 C -0.148 4.148 25 C -0.138 4.138 26 H 0.073 0.927 27 H 0.008 0.992 28 H 0.010 0.990 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.118 0.882 32 H 0.150 0.850 33 H 0.137 0.863 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.157 -19.322 -4.078 21.366 hybrid contribution -0.428 1.022 0.105 1.113 sum 7.728 -18.300 -3.973 20.259 Atomic orbital electron populations 1.70141 1.08183 1.28043 1.51056 1.26064 0.95709 1.03744 0.94391 0.85386 0.78101 0.77397 0.79462 1.18800 1.21167 1.18756 1.21586 0.94015 0.91318 1.51467 0.90668 1.18775 0.93552 0.91765 0.95507 1.21499 0.99399 0.86202 1.05908 1.24577 0.87296 0.86593 0.70463 1.90610 1.17217 1.87964 1.46935 1.86662 1.40206 1.13909 1.83385 1.25965 0.96952 0.83730 0.98876 0.88500 1.24562 0.91821 0.92247 0.95419 1.89713 1.44867 1.78014 1.17281 1.22829 0.93187 0.92755 0.85054 0.83513 1.19641 0.94825 1.02101 0.93936 1.21047 0.92915 0.97771 1.00067 1.21437 1.00098 0.99792 0.93650 1.21526 0.97290 0.98977 0.96211 1.21414 0.93316 0.99502 1.00559 1.21136 1.00581 1.00088 0.92023 0.92692 0.99162 0.98994 0.87193 0.86793 0.88165 0.85037 0.86275 0.84375 0.83844 0.83856 0.84545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 3 Si 0.97 43.59 29.54 68.60 2.03 45.61 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.55 -30.59 9.11 25.60 0.23 -30.35 16 8 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 9 C 0.04 2.24 4.26 29.85 0.13 2.37 16 10 C -0.09 -3.82 5.75 29.85 0.17 -3.65 16 11 C 0.47 18.46 7.96 71.24 0.57 19.03 16 12 O -0.54 -24.73 15.16 21.97 0.33 -24.40 16 13 O -0.33 -10.73 9.25 -47.44 -0.44 -11.17 16 14 C 0.00 0.02 4.37 31.29 0.14 0.16 16 15 H 0.10 2.64 7.07 -2.39 -0.02 2.62 16 16 C 0.04 0.75 9.06 72.27 0.65 1.40 16 17 O -0.38 -9.18 11.16 -140.04 -1.56 -10.74 16 18 C 0.12 2.63 4.74 30.14 0.14 2.77 16 19 H 0.15 2.25 8.14 -2.39 -0.02 2.23 16 20 C -0.10 -2.55 4.75 -19.87 -0.09 -2.65 16 21 C -0.10 -2.51 9.24 22.27 0.21 -2.30 16 22 C -0.13 -2.87 10.05 22.27 0.22 -2.65 16 23 C -0.12 -2.42 10.05 22.27 0.22 -2.19 16 24 C -0.13 -2.61 10.05 22.27 0.22 -2.38 16 25 C -0.12 -2.62 9.74 22.27 0.22 -2.41 16 26 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 27 H -0.01 -0.61 8.10 -2.39 -0.02 -0.63 16 28 H -0.01 -0.50 8.10 -2.39 -0.02 -0.52 16 29 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16 30 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 31 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.12 3.10 7.32 -2.91 -0.02 3.08 16 34 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -72.44 323.85 5.20 -67.25 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 1.06 Total: 13.50 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: 3.49 Total: -22.46 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.28 Total: -57.59 kcal Atomic # 8 Polarization: -44.64 SS G_CDS: -1.67 Total: -46.31 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -72.44 5.20 -67.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893649055.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.009 kcal (2) G-P(sol) polarization free energy of solvation -72.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds