Wall clock time and date at job start Mon Mar 30 2020 02:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47150 * 2 1 4 4 C 1.50704 * 109.46955 * 119.99647 * 2 1 3 5 5 H 1.07995 * 119.99435 * 120.00489 * 4 2 1 6 6 C 1.37872 * 120.00038 * 300.00012 * 4 2 1 7 7 N 1.31518 * 120.00284 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00087 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46891 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47164 * 120.00074 * 8 6 4 11 11 H 1.48500 * 109.46954 * 240.00399 * 8 6 4 12 12 C 1.50698 * 109.47546 * 239.99782 * 2 1 3 13 13 O 1.20828 * 120.00238 * 240.00418 * 12 2 1 14 14 O 1.34235 * 119.99810 * 59.99620 * 12 2 1 15 15 C 1.45196 * 116.99957 * 180.02562 * 14 12 2 16 16 H 1.09003 * 113.08164 * 18.09693 * 15 14 12 17 17 C 1.54032 * 113.81859 * 246.19170 * 15 14 12 18 18 O 1.44174 * 85.51803 * 268.35414 * 17 15 14 19 19 C 1.44178 * 93.34127 * 335.80402 * 18 17 15 20 20 H 1.08995 * 113.98568 * 270.03281 * 19 18 17 21 21 C 1.50700 * 113.86618 * 138.33606 * 19 18 17 22 22 C 1.38235 * 120.00273 * 169.13023 * 21 19 18 23 23 C 1.38234 * 120.00220 * 179.97438 * 22 21 19 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38238 * 119.99747 * 359.50225 * 24 23 22 26 26 C 1.38234 * 120.00083 * 0.44989 * 25 24 23 27 27 H 1.09006 * 109.47100 * 60.00155 * 1 2 3 28 28 H 1.08995 * 109.46946 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47658 * 300.00510 * 1 2 3 30 30 H 0.96996 * 120.00042 * 179.97438 * 7 6 4 31 31 H 1.09002 * 113.86658 * 22.49857 * 17 15 14 32 32 H 1.09004 * 113.86551 * 154.07334 * 17 15 14 33 33 H 1.07999 * 119.99770 * 359.97438 * 22 21 19 34 34 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 35 35 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 36 36 H 1.07999 * 119.99927 * 180.28388 * 25 24 23 37 37 H 1.08002 * 120.00281 * 179.83134 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8304 2.6034 8 14 2.3224 -1.1193 4.0080 9 1 3.1473 -2.2862 3.6039 10 1 3.1471 -0.1855 4.8161 11 1 1.1676 -1.5864 4.8165 12 6 2.0324 -0.7104 -1.2304 13 8 2.7270 -1.6928 -1.1195 14 8 1.7081 -0.2519 -2.4496 15 6 2.2268 -0.9864 -3.5896 16 1 2.5571 -1.9934 -3.3347 17 6 3.2442 -0.1924 -4.4305 18 8 2.1045 0.2254 -5.2085 19 6 1.3206 -0.9252 -4.8337 20 1 1.4346 -1.7766 -5.5046 21 6 -0.1195 -0.6072 -4.5238 22 6 -1.0360 -1.6307 -4.3710 23 6 -2.3568 -1.3390 -4.0862 24 6 -2.7625 -0.0236 -3.9601 25 6 -1.8452 0.9998 -4.1086 26 6 -0.5241 0.7081 -4.3924 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.7088 1.1616 3.4844 31 1 3.7282 0.6189 -3.8868 32 1 3.9486 -0.8189 -4.9777 33 1 -0.7200 -2.6583 -4.4741 34 1 -3.0727 -2.1388 -3.9665 35 1 -3.7953 0.2045 -3.7420 36 1 -2.1611 2.0274 -4.0055 37 1 0.1921 1.5077 -4.5111 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893649249.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:54 Heat of formation + Delta-G solvation = -70.087529 kcal Electronic energy + Delta-G solvation = -21584.374865 eV Core-core repulsion = 18293.310117 eV Total energy + Delta-G solvation = -3291.064749 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.95510 -39.13532 -38.42427 -35.38688 -33.91120 -31.68593 -30.73598 -30.64676 -28.73454 -26.14401 -25.21902 -23.55223 -22.39092 -21.85515 -20.52259 -19.39716 -17.28979 -16.85757 -16.46076 -16.23523 -15.87299 -15.41345 -15.21231 -14.91851 -14.34970 -14.14744 -13.93172 -13.29019 -13.18954 -12.77281 -12.55182 -12.35773 -11.97050 -11.62004 -11.13504 -11.08076 -10.91126 -10.82130 -10.71452 -10.47372 -10.34868 -10.17883 -10.09585 -9.87836 -9.16785 -9.05180 -8.73401 -8.55164 -8.47383 -6.12456 -4.18207 1.43600 1.59488 3.07613 3.18690 3.27322 3.34837 3.42600 3.69867 3.99221 4.35298 4.39825 4.66008 4.98631 5.09989 5.17106 5.20731 5.21885 5.26389 5.29978 5.47811 5.61696 5.68746 5.88603 5.98764 6.08317 6.19700 6.24500 6.58756 6.66202 6.68417 6.79502 6.86905 6.89311 7.13454 7.16968 7.42037 7.72782 7.92575 8.11675 8.78041 8.90825 9.47488 10.94903 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019669 B = 0.005522 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.243106 B = 5069.254633 C = 5904.792840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.060 3.940 3 H 0.064 0.936 4 C -0.513 4.513 5 H 0.076 0.924 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.903 3.097 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.464 3.536 13 O -0.516 6.516 14 O -0.328 6.328 15 C 0.021 3.979 16 H 0.097 0.903 17 C 0.026 3.974 18 O -0.364 6.364 19 C 0.108 3.892 20 H 0.113 0.887 21 C -0.081 4.081 22 C -0.110 4.110 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.121 4.121 26 C -0.078 4.078 27 H 0.024 0.976 28 H 0.029 0.971 29 H 0.095 0.905 30 H 0.263 0.737 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.643 -1.576 -14.827 15.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.041 3.959 3 H 0.082 0.918 4 C -0.551 4.551 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.731 3.269 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.309 3.691 13 O -0.403 6.403 14 O -0.246 6.246 15 C -0.036 4.036 16 H 0.114 0.886 17 C -0.051 4.051 18 O -0.283 6.283 19 C 0.050 3.950 20 H 0.130 0.870 21 C -0.081 4.081 22 C -0.128 4.128 23 C -0.141 4.141 24 C -0.135 4.135 25 C -0.139 4.139 26 C -0.096 4.096 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.553 -1.540 -14.834 15.331 hybrid contribution 0.468 -0.692 0.968 1.279 sum -3.084 -2.233 -13.866 14.379 Atomic orbital electron populations 1.21695 0.95386 0.99969 1.01740 1.18768 0.94970 0.96886 0.85270 0.91843 1.21166 1.31920 1.13244 0.88753 0.90623 1.24934 0.94887 0.95008 0.99124 1.69892 1.36501 1.22779 1.23778 0.86337 0.78678 0.79719 0.82180 1.19517 1.20851 1.20860 1.25575 0.76291 0.83162 0.84099 1.90483 1.36543 1.26825 1.86406 1.86788 1.69221 1.54147 1.14414 1.25359 0.93540 0.98010 0.86690 0.88558 1.24367 0.90496 0.99195 0.90991 1.89703 1.26026 1.40490 1.72086 1.22616 0.90033 0.89464 0.92837 0.86993 1.19393 0.93022 0.94317 1.01405 1.20804 0.93185 0.98408 1.00366 1.21004 0.95699 0.96658 1.00722 1.21142 0.99533 0.92986 0.99868 1.21146 0.93425 0.99270 1.00092 1.20937 0.95753 0.96189 0.96687 0.95724 0.95139 0.88607 0.92721 0.88073 0.88771 0.86322 0.86163 0.86278 0.86063 0.85439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.90 37.16 0.33 -2.80 16 2 C 0.06 1.53 2.74 -92.93 -0.25 1.28 16 3 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 4 C -0.51 -14.39 8.37 -34.44 -0.29 -14.68 16 5 H 0.08 2.21 6.76 -52.49 -0.35 1.86 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.46 10.87 7.25 36.00 0.26 11.13 16 13 O -0.52 -12.96 14.64 -18.75 -0.27 -13.24 16 14 O -0.33 -6.57 9.16 -43.40 -0.40 -6.97 16 15 C 0.02 0.34 4.37 -25.65 -0.11 0.22 16 16 H 0.10 1.55 7.07 -51.93 -0.37 1.18 16 17 C 0.03 0.35 9.06 37.61 0.34 0.69 16 18 O -0.36 -5.36 11.16 -44.58 -0.50 -5.86 16 19 C 0.11 1.49 4.74 -27.43 -0.13 1.36 16 20 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 21 C -0.08 -1.20 4.74 -104.62 -0.50 -1.69 16 22 C -0.11 -1.48 9.74 -39.58 -0.39 -1.86 16 23 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 24 C -0.12 -1.49 10.05 -39.58 -0.40 -1.88 16 25 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 26 C -0.08 -1.17 9.25 -39.58 -0.37 -1.53 16 27 H 0.02 0.53 8.11 -51.93 -0.42 0.11 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.13 1.94 7.31 -52.49 -0.38 1.56 16 LS Contribution 318.32 15.07 4.80 4.80 Total: -1.00 -30.95 318.32 -7.94 -38.89 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -4.78 Total: 2.32 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -2.39 Total: -12.15 kcal Atomic # 7 Polarization: -24.81 SS G_CDS: 0.63 Total: -24.18 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -1.17 Total: -26.06 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.95 -7.94 -38.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893649249.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.202 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds