Wall clock time and date at job start Mon Mar 30 2020 02:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47150 * 2 1 4 4 C 1.50704 * 109.46955 * 119.99647 * 2 1 3 5 5 H 1.07995 * 119.99435 * 120.00489 * 4 2 1 6 6 C 1.37872 * 120.00038 * 300.00012 * 4 2 1 7 7 N 1.31518 * 120.00284 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00087 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46891 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47164 * 120.00074 * 8 6 4 11 11 H 1.48500 * 109.46954 * 240.00399 * 8 6 4 12 12 C 1.50698 * 109.47546 * 239.99782 * 2 1 3 13 13 O 1.20828 * 120.00238 * 240.00418 * 12 2 1 14 14 O 1.34235 * 119.99810 * 59.99620 * 12 2 1 15 15 C 1.45196 * 116.99957 * 180.02562 * 14 12 2 16 16 H 1.09003 * 113.08164 * 18.09693 * 15 14 12 17 17 C 1.54032 * 113.81859 * 246.19170 * 15 14 12 18 18 O 1.44174 * 85.51803 * 268.35414 * 17 15 14 19 19 C 1.44178 * 93.34127 * 335.80402 * 18 17 15 20 20 H 1.08995 * 113.98568 * 270.03281 * 19 18 17 21 21 C 1.50700 * 113.86618 * 138.33606 * 19 18 17 22 22 C 1.38235 * 120.00273 * 169.13023 * 21 19 18 23 23 C 1.38234 * 120.00220 * 179.97438 * 22 21 19 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38238 * 119.99747 * 359.50225 * 24 23 22 26 26 C 1.38234 * 120.00083 * 0.44989 * 25 24 23 27 27 H 1.09006 * 109.47100 * 60.00155 * 1 2 3 28 28 H 1.08995 * 109.46946 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47658 * 300.00510 * 1 2 3 30 30 H 0.96996 * 120.00042 * 179.97438 * 7 6 4 31 31 H 1.09002 * 113.86658 * 22.49857 * 17 15 14 32 32 H 1.09004 * 113.86551 * 154.07334 * 17 15 14 33 33 H 1.07999 * 119.99770 * 359.97438 * 22 21 19 34 34 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 35 35 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 36 36 H 1.07999 * 119.99927 * 180.28388 * 25 24 23 37 37 H 1.08002 * 120.00281 * 179.83134 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8304 2.6034 8 14 2.3224 -1.1193 4.0080 9 1 3.1473 -2.2862 3.6039 10 1 3.1471 -0.1855 4.8161 11 1 1.1676 -1.5864 4.8165 12 6 2.0324 -0.7104 -1.2304 13 8 2.7270 -1.6928 -1.1195 14 8 1.7081 -0.2519 -2.4496 15 6 2.2268 -0.9864 -3.5896 16 1 2.5571 -1.9934 -3.3347 17 6 3.2442 -0.1924 -4.4305 18 8 2.1045 0.2254 -5.2085 19 6 1.3206 -0.9252 -4.8337 20 1 1.4346 -1.7766 -5.5046 21 6 -0.1195 -0.6072 -4.5238 22 6 -1.0360 -1.6307 -4.3710 23 6 -2.3568 -1.3390 -4.0862 24 6 -2.7625 -0.0236 -3.9601 25 6 -1.8452 0.9998 -4.1086 26 6 -0.5241 0.7081 -4.3924 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.7088 1.1616 3.4844 31 1 3.7282 0.6189 -3.8868 32 1 3.9486 -0.8189 -4.9777 33 1 -0.7200 -2.6583 -4.4741 34 1 -3.0727 -2.1388 -3.9665 35 1 -3.7953 0.2045 -3.7420 36 1 -2.1611 2.0274 -4.0055 37 1 0.1921 1.5077 -4.5111 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893649249.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:54 Heat of formation + Delta-G solvation = -86.731891 kcal Electronic energy + Delta-G solvation = -21585.096619 eV Core-core repulsion = 18293.310117 eV Total energy + Delta-G solvation = -3291.786502 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.22145 -40.73076 -39.49064 -37.07276 -35.95466 -32.79373 -32.62097 -31.73127 -29.96795 -27.31426 -27.18129 -25.35084 -23.45212 -22.98907 -22.10312 -20.83022 -18.71921 -18.35172 -18.20354 -17.56890 -17.26182 -16.88725 -16.57694 -16.47845 -15.76699 -15.41536 -15.18522 -14.74753 -14.53849 -14.18866 -13.90615 -13.62176 -13.53529 -13.23576 -13.00697 -12.79694 -12.63615 -12.34585 -12.22173 -12.08603 -11.93877 -11.67019 -11.47558 -11.21422 -11.12809 -10.89213 -10.55540 -9.76439 -9.59643 -8.21993 -6.35820 0.40094 0.56090 1.35644 1.40760 1.41599 1.53338 1.67800 2.39643 2.52295 2.91062 3.08030 3.21762 3.59972 3.90489 4.01207 4.09778 4.16756 4.23813 4.27307 4.33482 4.58567 4.62575 4.65242 4.70863 4.84378 4.86976 4.96838 4.98516 5.09260 5.22280 5.35443 5.44296 5.58403 5.65859 5.66580 5.75120 5.84812 6.06600 6.14610 6.70949 6.99192 7.33402 8.84808 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019669 B = 0.005522 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.243106 B = 5069.254633 C = 5904.792840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.053 3.947 3 H 0.047 0.953 4 C -0.538 4.538 5 H 0.057 0.943 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.275 1.275 10 H -0.273 1.273 11 H -0.272 1.272 12 C 0.473 3.527 13 O -0.539 6.539 14 O -0.329 6.329 15 C -0.002 4.002 16 H 0.096 0.904 17 C 0.036 3.964 18 O -0.380 6.380 19 C 0.119 3.881 20 H 0.150 0.850 21 C -0.102 4.102 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.122 4.122 25 C -0.133 4.133 26 C -0.101 4.101 27 H 0.040 0.960 28 H 0.026 0.974 29 H 0.077 0.923 30 H 0.268 0.732 31 H 0.095 0.905 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.084 -2.467 -15.405 16.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.034 3.966 3 H 0.065 0.935 4 C -0.576 4.576 5 H 0.075 0.925 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.789 3.211 9 H -0.200 1.200 10 H -0.198 1.198 11 H -0.198 1.198 12 C 0.318 3.682 13 O -0.428 6.428 14 O -0.246 6.246 15 C -0.058 4.058 16 H 0.114 0.886 17 C -0.041 4.041 18 O -0.299 6.299 19 C 0.062 3.938 20 H 0.167 0.833 21 C -0.103 4.103 22 C -0.138 4.138 23 C -0.146 4.146 24 C -0.140 4.140 25 C -0.151 4.151 26 C -0.119 4.119 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.153 0.847 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.005 -2.411 -15.437 16.129 hybrid contribution 0.568 -0.384 1.056 1.259 sum -3.437 -2.795 -14.381 15.047 Atomic orbital electron populations 1.21470 0.94411 0.99564 1.01551 1.18653 0.95779 0.95993 0.86195 0.93482 1.21269 1.32654 1.13284 0.90386 0.92454 1.25654 0.94838 0.95619 1.01619 1.69972 1.36655 1.23400 1.24741 0.85411 0.78402 0.78547 0.78756 1.19982 1.19828 1.19766 1.24939 0.75818 0.82494 0.84909 1.90458 1.37515 1.27707 1.87089 1.86711 1.69104 1.54396 1.14367 1.25927 0.95970 0.98036 0.85901 0.88630 1.24549 0.90289 0.98986 0.90241 1.89698 1.26710 1.41401 1.72127 1.22837 0.89152 0.90148 0.91674 0.83311 1.19638 0.93866 0.94563 1.02200 1.21126 0.93456 0.99123 1.00051 1.21403 0.96006 0.97479 0.99733 1.21501 1.00607 0.92871 0.99041 1.21411 0.93184 1.00518 0.99973 1.21012 0.96376 0.96331 0.98154 0.94104 0.95488 0.90388 0.92223 0.88656 0.84782 0.84399 0.83679 0.83852 0.84679 0.86695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.44 8.90 71.98 0.64 -4.80 16 2 C 0.05 2.75 2.74 -12.29 -0.03 2.72 16 3 H 0.05 2.58 8.14 -2.38 -0.02 2.56 16 4 C -0.54 -30.72 8.37 25.60 0.21 -30.50 16 5 H 0.06 3.43 6.76 -2.91 -0.02 3.41 16 6 C 0.02 1.25 5.30 84.65 0.45 1.70 16 7 N -0.91 -50.72 11.32 21.45 0.24 -50.48 16 8 Si 0.96 43.77 29.54 68.60 2.03 45.80 16 9 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 12 C 0.47 22.45 7.25 71.24 0.52 22.97 16 13 O -0.54 -27.39 14.64 21.96 0.32 -27.07 16 14 O -0.33 -13.20 9.16 -47.52 -0.44 -13.63 16 15 C 0.00 -0.07 4.37 31.29 0.14 0.07 16 16 H 0.10 2.98 7.07 -2.39 -0.02 2.96 16 17 C 0.04 0.88 9.06 72.27 0.65 1.54 16 18 O -0.38 -10.67 11.16 -140.04 -1.56 -12.23 16 19 C 0.12 3.07 4.74 30.14 0.14 3.21 16 20 H 0.15 2.70 8.14 -2.39 -0.02 2.68 16 21 C -0.10 -2.90 4.74 -19.87 -0.09 -3.00 16 22 C -0.12 -3.00 9.74 22.27 0.22 -2.79 16 23 C -0.13 -2.98 10.05 22.27 0.22 -2.76 16 24 C -0.12 -2.88 10.05 22.27 0.22 -2.65 16 25 C -0.13 -3.49 10.05 22.27 0.22 -3.27 16 26 C -0.10 -3.00 9.25 22.27 0.21 -2.79 16 27 H 0.04 1.79 8.11 -2.38 -0.02 1.77 16 28 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.08 4.07 6.07 -2.39 -0.01 4.05 16 30 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 31 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.13 2.27 8.14 -2.38 -0.02 2.25 16 33 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 34 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 35 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 36 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.11 3.59 7.31 -2.91 -0.02 3.57 16 Total: -1.00 -66.54 318.32 5.38 -61.16 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 1.07 Total: 16.82 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 3.72 Total: -20.37 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.24 Total: -50.48 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -1.68 Total: -52.93 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -66.54 5.38 -61.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893649249.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.575 kcal (2) G-P(sol) polarization free energy of solvation -66.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds