Wall clock time and date at job start Mon Mar 30 2020 02:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 13 13 O 1.20818 * 120.00023 * 119.99626 * 12 2 1 14 14 O 1.34233 * 119.99764 * 300.00336 * 12 2 1 15 15 C 1.45194 * 116.99854 * 179.97438 * 14 12 2 16 16 H 1.08994 * 113.00196 * 22.31975 * 15 14 12 17 17 C 1.54034 * 113.81916 * 250.49086 * 15 14 12 18 18 O 1.44179 * 85.51686 * 268.35483 * 17 15 14 19 19 C 1.44178 * 93.34153 * 335.80573 * 18 17 15 20 20 H 1.08994 * 113.86228 * 270.04741 * 19 18 17 21 21 C 1.50701 * 113.86278 * 138.34218 * 19 18 17 22 22 C 1.38226 * 120.00188 * 348.85307 * 21 19 18 23 23 C 1.38235 * 120.00059 * 179.79030 * 22 21 19 24 24 C 1.38240 * 119.99772 * 0.46188 * 23 22 21 25 25 C 1.38229 * 119.99819 * 359.77429 * 24 23 22 26 26 C 1.38236 * 119.99412 * 169.12973 * 21 19 18 27 27 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 29 29 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 31 31 H 1.09001 * 113.85919 * 22.50303 * 17 15 14 32 32 H 1.08996 * 113.86558 * 154.07425 * 17 15 14 33 33 H 1.07998 * 120.00196 * 0.02562 * 22 21 19 34 34 H 1.08001 * 120.00420 * 180.25610 * 23 22 21 35 35 H 1.08000 * 119.99982 * 179.79070 * 24 23 22 36 36 H 1.08005 * 119.99900 * 180.02562 * 25 24 23 37 37 H 1.08001 * 120.00120 * 359.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 3.1365 -2.2939 -3.6038 10 1 1.1525 -1.5961 -4.8105 11 1 3.1331 -0.1969 -4.8221 12 6 2.0324 -0.7104 1.2304 13 8 2.7269 -1.6928 1.1195 14 8 1.7080 -0.2519 2.4496 15 6 2.2267 -0.9864 3.5896 16 1 3.1107 -1.5771 3.3493 17 6 1.1509 -1.7659 4.3691 18 8 1.0366 -0.5773 5.1771 19 6 2.3725 -0.1343 4.8645 20 1 3.1316 -0.5008 5.5554 21 6 2.4779 1.3456 4.6000 22 6 1.3323 2.1026 4.4413 23 6 1.4289 3.4608 4.2030 24 6 2.6714 4.0603 4.1140 25 6 3.8170 3.3024 4.2680 26 6 3.7204 1.9449 4.5106 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7011 1.1560 -3.4844 31 1 0.2583 -1.9896 3.7849 32 1 1.5367 -2.6319 4.9070 33 1 0.3617 1.6336 4.5071 34 1 0.5338 4.0531 4.0831 35 1 2.7469 5.1209 3.9245 36 1 4.7877 3.7708 4.1989 37 1 4.6155 1.3526 4.6306 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893649250.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:56 Heat of formation + Delta-G solvation = -70.214297 kcal Electronic energy + Delta-G solvation = -21473.619745 eV Core-core repulsion = 18182.549500 eV Total energy + Delta-G solvation = -3291.070246 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.96036 -39.14512 -38.42799 -35.38954 -33.91705 -31.69997 -30.74373 -30.65620 -28.73615 -26.15058 -25.22840 -23.54982 -22.40347 -21.87888 -20.53623 -19.37436 -17.31199 -16.93221 -16.46027 -16.14973 -15.87893 -15.41366 -15.09255 -15.04957 -14.36884 -14.11718 -14.05416 -13.23123 -13.15016 -12.74042 -12.56441 -12.44944 -12.03734 -11.55050 -11.15331 -11.08812 -10.92457 -10.80229 -10.73142 -10.54033 -10.36536 -10.16982 -10.08655 -9.86636 -9.17041 -9.05668 -8.75138 -8.56930 -8.47513 -6.12660 -4.18364 1.41930 1.57858 3.07360 3.19072 3.27253 3.34780 3.42567 3.69064 3.97711 4.35258 4.39679 4.64637 4.97419 5.08673 5.17036 5.20127 5.21396 5.25847 5.29018 5.48305 5.61127 5.67633 5.88113 5.98150 6.07019 6.19147 6.23230 6.57102 6.64478 6.67031 6.78238 6.84900 6.86070 7.12063 7.16344 7.41145 7.71921 7.92105 8.11292 8.78054 8.90692 9.47295 10.94705 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.005321 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.215332 B = 5260.811447 C = 5952.445133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.060 3.940 3 H 0.064 0.936 4 C -0.513 4.513 5 H 0.076 0.924 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.904 3.096 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.464 3.536 13 O -0.516 6.516 14 O -0.329 6.329 15 C 0.022 3.978 16 H 0.095 0.905 17 C 0.025 3.975 18 O -0.364 6.364 19 C 0.110 3.890 20 H 0.113 0.887 21 C -0.082 4.082 22 C -0.077 4.077 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.124 4.124 26 C -0.110 4.110 27 H 0.030 0.970 28 H 0.024 0.976 29 H 0.097 0.903 30 H 0.263 0.737 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.128 0.872 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.955 2.631 14.987 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.041 3.959 3 H 0.082 0.918 4 C -0.551 4.551 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.731 3.269 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.209 1.209 12 C 0.309 3.691 13 O -0.402 6.402 14 O -0.246 6.246 15 C -0.035 4.035 16 H 0.113 0.887 17 C -0.052 4.052 18 O -0.283 6.283 19 C 0.052 3.948 20 H 0.131 0.869 21 C -0.082 4.082 22 C -0.095 4.095 23 C -0.140 4.140 24 C -0.136 4.136 25 C -0.142 4.142 26 C -0.128 4.128 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.878 2.540 14.989 15.318 hybrid contribution 0.514 -0.654 -0.966 1.274 sum 2.391 1.886 14.023 14.350 Atomic orbital electron populations 1.21731 0.95526 1.00008 1.01841 1.18761 0.94884 0.96951 0.85281 0.91814 1.21170 1.31858 1.13312 0.88747 0.90615 1.24938 0.94873 0.95025 0.99134 1.69892 1.36442 1.22833 1.23778 0.86333 0.78658 0.79733 0.82162 1.19517 1.20848 1.20861 1.25560 0.76302 0.83193 0.84063 1.90483 1.36480 1.26837 1.86446 1.86783 1.69257 1.54169 1.14404 1.25350 0.98321 0.93138 0.86646 0.88682 1.24378 1.00208 0.89499 0.91089 1.89706 1.30006 1.36759 1.71834 1.22599 0.86618 0.92415 0.93160 0.86938 1.19399 0.94024 0.93293 1.01475 1.20947 0.98638 0.93401 0.96546 1.21158 0.97648 0.94969 1.00212 1.21151 0.92735 0.99820 0.99860 1.21013 0.98491 0.93830 1.00842 1.20812 0.96451 0.95041 1.00476 0.95034 0.95720 0.88498 0.92719 0.88092 0.88789 0.85394 0.86026 0.86249 0.86131 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.90 37.16 0.33 -2.84 16 2 C 0.06 1.54 2.74 -92.92 -0.25 1.28 16 3 H 0.06 1.71 8.14 -51.93 -0.42 1.28 16 4 C -0.51 -14.39 8.38 -34.44 -0.29 -14.68 16 5 H 0.08 2.21 6.76 -52.49 -0.35 1.86 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.81 11.31 55.43 0.63 -24.18 16 8 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 C 0.46 10.87 7.25 36.01 0.26 11.14 16 13 O -0.52 -12.95 14.68 -18.74 -0.28 -13.23 16 14 O -0.33 -6.58 9.15 -43.39 -0.40 -6.98 16 15 C 0.02 0.36 4.31 -25.65 -0.11 0.25 16 16 H 0.10 1.52 7.17 -51.93 -0.37 1.15 16 17 C 0.03 0.34 9.06 37.61 0.34 0.68 16 18 O -0.36 -5.38 11.16 -44.58 -0.50 -5.88 16 19 C 0.11 1.50 4.74 -27.43 -0.13 1.37 16 20 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 21 C -0.08 -1.19 4.75 -104.63 -0.50 -1.69 16 22 C -0.08 -1.16 9.24 -39.59 -0.37 -1.52 16 23 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 24 C -0.12 -1.48 10.05 -39.58 -0.40 -1.87 16 25 C -0.12 -1.55 10.05 -39.59 -0.40 -1.94 16 26 C -0.11 -1.46 9.74 -39.58 -0.39 -1.84 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.02 0.52 8.11 -51.93 -0.42 0.10 16 29 H 0.10 2.49 6.06 -51.93 -0.31 2.17 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.13 1.95 7.31 -52.49 -0.38 1.57 16 34 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 36 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 37 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 318.36 15.07 4.80 4.80 Total: -1.00 -30.94 318.36 -7.94 -38.88 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -4.79 Total: 2.31 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -2.39 Total: -12.12 kcal Atomic # 7 Polarization: -24.81 SS G_CDS: 0.63 Total: -24.18 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -1.17 Total: -26.09 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.94 -7.94 -38.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893649250.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.334 kcal (2) G-P(sol) polarization free energy of solvation -30.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds