Wall clock time and date at job start Mon Mar 30 2020 02:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 13 13 O 1.20818 * 120.00023 * 119.99626 * 12 2 1 14 14 O 1.34233 * 119.99764 * 300.00336 * 12 2 1 15 15 C 1.45194 * 116.99854 * 179.97438 * 14 12 2 16 16 H 1.08994 * 113.00196 * 22.31975 * 15 14 12 17 17 C 1.54034 * 113.81916 * 250.49086 * 15 14 12 18 18 O 1.44179 * 85.51686 * 268.35483 * 17 15 14 19 19 C 1.44178 * 93.34153 * 335.80573 * 18 17 15 20 20 H 1.08994 * 113.86228 * 270.04741 * 19 18 17 21 21 C 1.50701 * 113.86278 * 138.34218 * 19 18 17 22 22 C 1.38226 * 120.00188 * 348.85307 * 21 19 18 23 23 C 1.38235 * 120.00059 * 179.79030 * 22 21 19 24 24 C 1.38240 * 119.99772 * 0.46188 * 23 22 21 25 25 C 1.38229 * 119.99819 * 359.77429 * 24 23 22 26 26 C 1.38236 * 119.99412 * 169.12973 * 21 19 18 27 27 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 29 29 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 31 31 H 1.09001 * 113.85919 * 22.50303 * 17 15 14 32 32 H 1.08996 * 113.86558 * 154.07425 * 17 15 14 33 33 H 1.07998 * 120.00196 * 0.02562 * 22 21 19 34 34 H 1.08001 * 120.00420 * 180.25610 * 23 22 21 35 35 H 1.08000 * 119.99982 * 179.79070 * 24 23 22 36 36 H 1.08005 * 119.99900 * 180.02562 * 25 24 23 37 37 H 1.08001 * 120.00120 * 359.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 3.1365 -2.2939 -3.6038 10 1 1.1525 -1.5961 -4.8105 11 1 3.1331 -0.1969 -4.8221 12 6 2.0324 -0.7104 1.2304 13 8 2.7269 -1.6928 1.1195 14 8 1.7080 -0.2519 2.4496 15 6 2.2267 -0.9864 3.5896 16 1 3.1107 -1.5771 3.3493 17 6 1.1509 -1.7659 4.3691 18 8 1.0366 -0.5773 5.1771 19 6 2.3725 -0.1343 4.8645 20 1 3.1316 -0.5008 5.5554 21 6 2.4779 1.3456 4.6000 22 6 1.3323 2.1026 4.4413 23 6 1.4289 3.4608 4.2030 24 6 2.6714 4.0603 4.1140 25 6 3.8170 3.3024 4.2680 26 6 3.7204 1.9449 4.5106 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7011 1.1560 -3.4844 31 1 0.2583 -1.9896 3.7849 32 1 1.5367 -2.6319 4.9070 33 1 0.3617 1.6336 4.5071 34 1 0.5338 4.0531 4.0831 35 1 2.7469 5.1209 3.9245 36 1 4.7877 3.7708 4.1989 37 1 4.6155 1.3526 4.6306 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893649250.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:56 Heat of formation + Delta-G solvation = -86.887974 kcal Electronic energy + Delta-G solvation = -21474.342770 eV Core-core repulsion = 18182.549500 eV Total energy + Delta-G solvation = -3291.793270 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.22674 -40.73535 -39.49446 -37.07489 -35.95634 -32.80290 -32.62004 -31.74092 -29.96995 -27.32403 -27.17952 -25.34441 -23.46151 -23.01571 -22.09940 -20.81538 -18.77692 -18.34190 -18.22488 -17.43990 -17.28211 -16.92663 -16.58016 -16.47565 -15.85550 -15.41484 -15.19406 -14.74306 -14.31284 -14.22287 -14.14906 -13.57998 -13.51761 -13.22391 -13.01077 -12.77868 -12.64083 -12.36160 -12.24085 -12.08484 -11.94292 -11.69924 -11.46347 -11.22424 -11.12139 -10.88466 -10.55650 -9.77537 -9.60878 -8.22063 -6.35904 0.38932 0.55028 1.35899 1.40753 1.41526 1.53312 1.67607 2.39485 2.51723 2.89972 3.07991 3.21346 3.58972 3.90565 4.00667 4.09223 4.16157 4.23373 4.26893 4.32821 4.57953 4.62437 4.64852 4.70304 4.83691 4.86450 4.96223 4.97465 5.08333 5.21520 5.35256 5.44088 5.57292 5.65336 5.66123 5.74218 5.85099 6.06722 6.13661 6.70897 6.99307 7.33299 8.84703 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.005321 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.215332 B = 5260.811447 C = 5952.445133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.054 3.946 3 H 0.045 0.955 4 C -0.538 4.538 5 H 0.057 0.943 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.275 1.275 10 H -0.272 1.272 11 H -0.273 1.273 12 C 0.473 3.527 13 O -0.538 6.538 14 O -0.330 6.330 15 C -0.001 4.001 16 H 0.095 0.905 17 C 0.034 3.966 18 O -0.380 6.380 19 C 0.121 3.879 20 H 0.151 0.849 21 C -0.103 4.103 22 C -0.101 4.101 23 C -0.134 4.134 24 C -0.123 4.123 25 C -0.129 4.129 26 C -0.119 4.119 27 H 0.030 0.970 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.268 0.732 31 H 0.094 0.906 32 H 0.134 0.866 33 H 0.115 0.885 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.716 2.593 15.626 16.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.035 3.965 3 H 0.063 0.937 4 C -0.576 4.576 5 H 0.076 0.924 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.789 3.211 9 H -0.200 1.200 10 H -0.197 1.197 11 H -0.199 1.199 12 C 0.318 3.682 13 O -0.427 6.427 14 O -0.246 6.246 15 C -0.057 4.057 16 H 0.113 0.887 17 C -0.042 4.042 18 O -0.299 6.299 19 C 0.064 3.936 20 H 0.168 0.832 21 C -0.104 4.104 22 C -0.119 4.119 23 C -0.152 4.152 24 C -0.141 4.141 25 C -0.147 4.147 26 C -0.137 4.137 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.152 0.848 33 H 0.133 0.867 34 H 0.153 0.847 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.622 2.520 15.652 16.069 hybrid contribution 0.285 -0.576 -1.074 1.251 sum 2.906 1.944 14.579 14.992 Atomic orbital electron populations 1.21545 0.94445 0.99894 1.01814 1.18634 0.95803 0.95880 0.86200 0.93731 1.21276 1.32591 1.13349 0.90387 0.92441 1.25661 0.94817 0.95647 1.01635 1.69975 1.36595 1.23467 1.24731 0.85405 0.78398 0.78542 0.78734 1.19973 1.19738 1.19862 1.24926 0.75821 0.82534 0.84872 1.90458 1.37452 1.27709 1.87125 1.86706 1.69020 1.54531 1.14358 1.25916 0.99397 0.94485 0.85888 0.88670 1.24549 0.99030 0.90177 0.90479 1.89701 1.30921 1.37440 1.71865 1.22828 0.86996 0.91776 0.91991 0.83164 1.19651 0.94506 0.93933 1.02273 1.21024 0.98468 0.94359 0.98069 1.21426 0.98925 0.94730 1.00141 1.21517 0.92373 1.01204 0.99032 1.21421 0.99727 0.93767 0.99801 1.21146 0.96711 0.95785 1.00083 0.95068 0.93770 0.90332 0.92230 0.88816 0.84841 0.86657 0.84660 0.83817 0.83571 0.84207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.90 71.98 0.64 -5.10 16 2 C 0.05 2.81 2.74 -12.29 -0.03 2.78 16 3 H 0.04 2.47 8.14 -2.38 -0.02 2.45 16 4 C -0.54 -30.74 8.38 25.60 0.21 -30.52 16 5 H 0.06 3.44 6.76 -2.91 -0.02 3.42 16 6 C 0.02 1.23 5.30 84.66 0.45 1.68 16 7 N -0.91 -50.77 11.31 21.45 0.24 -50.53 16 8 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 9 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 C 0.47 22.45 7.25 71.24 0.52 22.97 16 13 O -0.54 -27.36 14.68 21.99 0.32 -27.03 16 14 O -0.33 -13.21 9.15 -47.50 -0.43 -13.65 16 15 C 0.00 -0.03 4.31 31.29 0.13 0.11 16 16 H 0.10 2.95 7.17 -2.39 -0.02 2.93 16 17 C 0.03 0.85 9.06 72.27 0.65 1.51 16 18 O -0.38 -10.69 11.16 -140.04 -1.56 -12.25 16 19 C 0.12 3.11 4.74 30.14 0.14 3.25 16 20 H 0.15 2.68 8.14 -2.39 -0.02 2.66 16 21 C -0.10 -2.92 4.75 -19.87 -0.09 -3.02 16 22 C -0.10 -3.02 9.24 22.27 0.21 -2.82 16 23 C -0.13 -3.55 10.05 22.27 0.22 -3.32 16 24 C -0.12 -2.91 10.05 22.27 0.22 -2.68 16 25 C -0.13 -2.98 10.05 22.27 0.22 -2.76 16 26 C -0.12 -2.97 9.74 22.27 0.22 -2.75 16 27 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.04 1.89 8.11 -2.39 -0.02 1.87 16 29 H 0.08 4.08 6.06 -2.39 -0.01 4.07 16 30 H 0.27 14.04 8.31 -92.70 -0.77 13.27 16 31 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.12 3.61 7.31 -2.91 -0.02 3.59 16 34 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 35 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 36 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 37 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -66.70 318.36 5.38 -61.32 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 1.07 Total: 17.00 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: 3.72 Total: -20.68 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.24 Total: -50.53 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -1.68 Total: -52.93 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -66.70 5.38 -61.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893649250.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.567 kcal (2) G-P(sol) polarization free energy of solvation -66.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds