Wall clock time and date at job start Mon Mar 30 2020 01:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38274 * 119.98424 * 2 1 4 4 C 1.38250 * 120.15424 * 179.97438 * 3 2 1 5 5 C 1.38183 * 120.10913 * 359.76327 * 4 3 2 6 6 C 1.38740 * 119.95483 * 0.53332 * 5 4 3 7 7 N 1.40312 * 120.06974 * 179.72462 * 6 5 4 8 8 C 1.36090 * 125.94535 * 359.69842 * 7 6 5 9 9 C 1.35379 * 106.05617 * 180.02562 * 8 7 6 10 10 C 1.50703 * 126.73566 * 180.02562 * 9 8 7 11 11 N 1.46503 * 109.47006 * 94.99962 * 10 9 8 12 12 C 1.36935 * 119.99696 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00342 * 359.97438 * 12 11 10 14 14 C 1.38816 * 119.99780 * 179.97438 * 12 11 10 15 15 N 1.31616 * 119.99949 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99687 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.47271 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.46952 * 120.00155 * 16 14 12 19 19 H 1.48501 * 109.46572 * 239.99587 * 16 14 12 20 20 N 1.33770 * 106.53345 * 359.97438 * 9 8 7 21 21 N 1.28607 * 109.05949 * 0.02562 * 20 9 8 22 22 C 1.38309 * 119.97586 * 180.02562 * 2 1 3 23 23 F 1.35098 * 120.05668 * 0.03030 * 22 2 1 24 24 H 1.09001 * 109.47569 * 269.98657 * 1 2 3 25 25 H 1.09007 * 109.46595 * 29.98126 * 1 2 3 26 26 H 1.08997 * 109.47088 * 149.97980 * 1 2 3 27 27 H 1.07999 * 119.92862 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.95103 * 180.02562 * 4 3 2 29 29 H 1.07995 * 120.02168 * 180.25781 * 5 4 3 30 30 H 1.08003 * 126.97327 * 359.97438 * 8 7 6 31 31 H 1.08996 * 109.46778 * 214.99534 * 10 9 8 32 32 H 1.08997 * 109.47062 * 334.99799 * 10 9 8 33 33 H 0.96998 * 119.99952 * 359.97438 * 11 10 9 34 34 H 0.96999 * 120.00038 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1977 0.0000 4 6 3.5805 1.2018 0.0005 5 6 4.2773 0.0085 0.0060 6 6 3.5885 -1.1959 -0.0002 7 7 4.2936 -2.4090 -0.0005 8 6 5.6476 -2.5460 -0.0009 9 6 5.8891 -3.8781 -0.0017 10 6 7.2383 -4.5496 -0.0018 11 7 7.6215 -4.8757 1.3741 12 6 8.8173 -5.4948 1.6232 13 1 9.4776 -5.7430 0.8055 14 6 9.1807 -5.8034 2.9269 15 7 8.3762 -5.5005 3.9236 16 14 10.8116 -6.6485 3.2667 17 1 11.5259 -6.8793 1.9855 18 1 11.6408 -5.7880 4.1483 19 1 10.5641 -7.9505 3.9366 20 7 4.6952 -4.4814 -0.0011 21 7 3.7721 -3.5860 -0.0006 22 6 2.1980 -1.1981 -0.0005 23 9 1.5232 -2.3684 -0.0017 24 1 -0.3634 -0.0002 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6566 2.1322 -0.0004 28 1 4.1170 2.1392 0.0010 29 1 5.3572 0.0133 0.0106 30 1 6.3807 -1.7530 -0.0014 31 1 7.1885 -5.4647 -0.5917 32 1 7.9786 -3.8774 -0.4356 33 1 7.0286 -4.6525 2.1086 34 1 8.6302 -5.7158 4.8346 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899746451.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:11 Heat of formation + Delta-G solvation = 102.377724 kcal Electronic energy + Delta-G solvation = -20157.557790 eV Core-core repulsion = 16815.096893 eV Total energy + Delta-G solvation = -3342.460897 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.07550 -43.18980 -39.60154 -35.47279 -34.49162 -32.70312 -31.83541 -30.29847 -29.79791 -27.52375 -25.88588 -24.44049 -23.06588 -22.26570 -21.22915 -20.64821 -18.24697 -17.56973 -17.10385 -16.63277 -16.56117 -15.60653 -15.24950 -15.06733 -14.62256 -13.93172 -13.81094 -13.76010 -13.51306 -13.22526 -12.98517 -12.67565 -12.53994 -12.27949 -12.04676 -11.61694 -11.27404 -10.98014 -10.83432 -10.77515 -10.57916 -10.04893 -9.77771 -9.15610 -9.05386 -8.88976 -8.69992 -6.92746 -5.73843 -3.04091 0.29865 0.65028 1.94397 2.21533 2.80523 3.12651 3.45902 3.51336 3.53915 3.68940 4.07857 4.25892 4.48749 4.60790 4.63600 4.68425 4.89058 5.10717 5.17412 5.19837 5.31650 5.39901 5.52037 5.61188 5.65059 5.70521 5.83725 5.86624 6.14741 6.22128 6.32132 6.59586 6.72461 6.82142 7.71649 8.42840 8.69474 9.54823 10.09585 10.45602 11.48898 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.034757 B = 0.003491 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.410907 B = 8019.154060 C = 8258.944761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.104 4.104 3 C -0.092 4.092 4 C -0.104 4.104 5 C -0.101 4.101 6 C 0.106 3.894 7 N -0.257 5.257 8 C -0.043 4.043 9 C 0.004 3.996 10 C 0.232 3.768 11 N -0.726 5.726 12 C -0.240 4.240 13 H 0.075 0.925 14 C -0.013 4.013 15 N -0.931 5.931 16 Si 0.910 3.090 17 H -0.279 1.279 18 H -0.292 1.292 19 H -0.291 1.291 20 N -0.242 5.242 21 N -0.077 5.077 22 C 0.113 3.887 23 F -0.109 7.109 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.141 0.859 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.194 0.806 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.386 0.614 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.666 18.709 -10.050 25.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.106 4.106 3 C -0.111 4.111 4 C -0.123 4.123 5 C -0.121 4.121 6 C 0.013 3.987 7 N -0.044 5.044 8 C -0.190 4.190 9 C -0.132 4.132 10 C 0.103 3.897 11 N -0.371 5.371 12 C -0.371 4.371 13 H 0.092 0.908 14 C -0.209 4.209 15 N -0.579 5.579 16 Si 0.741 3.259 17 H -0.204 1.204 18 H -0.219 1.219 19 H -0.218 1.218 20 N -0.110 5.110 21 N -0.055 5.055 22 C 0.091 3.909 23 F -0.088 7.088 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.158 0.842 28 H 0.161 0.839 29 H 0.164 0.836 30 H 0.211 0.789 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.219 0.781 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.793 17.676 -10.084 25.159 hybrid contribution 1.571 0.075 0.634 1.695 sum -13.222 17.752 -9.451 24.068 Atomic orbital electron populations 1.20766 0.89189 1.03810 1.03379 1.19919 0.97588 0.90998 1.02047 1.21079 0.94149 0.97256 0.98601 1.21065 0.94062 0.97669 0.99477 1.20915 1.01183 0.89553 1.00482 1.17748 0.89854 0.83706 1.07438 1.44552 1.05788 1.05701 1.48393 1.23560 0.84352 1.00276 1.10767 1.22557 0.96610 0.90408 1.03593 1.18992 0.84512 0.96170 0.89982 1.42317 1.21786 1.72095 1.00931 1.19273 0.94783 1.30758 0.92321 0.90755 1.24775 0.98719 1.01818 0.95597 1.69694 1.36889 1.52719 0.98642 0.86076 0.83151 0.78919 0.77783 1.20433 1.21893 1.21832 1.75123 0.97698 1.23411 1.14781 1.78551 1.22132 0.85366 1.19466 1.17172 0.87292 0.82589 1.03828 1.91613 1.79252 1.44755 1.93134 0.90240 0.90467 0.90723 0.84158 0.83868 0.83607 0.78888 0.94002 0.94186 0.78069 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 9.83 36.00 0.35 -0.41 16 2 C -0.10 -0.93 5.88 -104.58 -0.62 -1.54 16 3 C -0.09 -0.61 9.69 -39.56 -0.38 -0.99 16 4 C -0.10 -0.69 10.04 -39.60 -0.40 -1.09 16 5 C -0.10 -0.94 9.46 -39.42 -0.37 -1.31 16 6 C 0.11 1.39 6.69 -83.49 -0.56 0.84 16 7 N -0.26 -4.29 3.56 -10.42 -0.04 -4.32 16 8 C -0.04 -0.70 10.85 -16.68 -0.18 -0.88 16 9 C 0.00 0.08 6.61 -82.77 -0.55 -0.47 16 10 C 0.23 4.96 6.82 -5.19 -0.04 4.92 16 11 N -0.73 -19.27 5.59 -61.08 -0.34 -19.62 16 12 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 13 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 14 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 15 N -0.93 -28.97 13.06 55.49 0.72 -28.24 16 16 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 N -0.24 -5.26 12.39 33.29 0.41 -4.84 16 21 N -0.08 -1.55 11.40 60.35 0.69 -0.86 16 22 C 0.11 1.43 7.22 -39.25 -0.28 1.15 16 23 F -0.11 -1.65 14.79 2.25 0.03 -1.62 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 26 H 0.07 0.55 7.64 -51.93 -0.40 0.15 16 27 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 28 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 29 H 0.15 1.10 6.77 -52.49 -0.36 0.74 16 30 H 0.19 2.32 7.11 -52.48 -0.37 1.95 16 31 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.39 11.08 7.66 -40.82 -0.31 10.77 16 34 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 304.19 15.07 4.58 4.58 Total: -1.00 -35.36 304.19 -5.74 -41.10 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -3.52 Total: 3.44 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -3.27 Total: -7.25 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 1.45 Total: -57.88 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.03 Total: -1.62 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -35.36 -5.74 -41.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899746451.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.480 kcal (2) G-P(sol) polarization free energy of solvation -35.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds