Wall clock time and date at job start Mon Mar 30 2020 01:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38274 * 119.98424 * 2 1 4 4 C 1.38250 * 120.15424 * 179.97438 * 3 2 1 5 5 C 1.38183 * 120.10913 * 359.76327 * 4 3 2 6 6 C 1.38740 * 119.95483 * 0.53332 * 5 4 3 7 7 N 1.40312 * 120.06974 * 179.72462 * 6 5 4 8 8 C 1.36090 * 125.94535 * 359.69842 * 7 6 5 9 9 C 1.35379 * 106.05617 * 180.02562 * 8 7 6 10 10 C 1.50703 * 126.73566 * 180.02562 * 9 8 7 11 11 N 1.46503 * 109.47006 * 94.99962 * 10 9 8 12 12 C 1.36935 * 119.99696 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00342 * 359.97438 * 12 11 10 14 14 C 1.38816 * 119.99780 * 179.97438 * 12 11 10 15 15 N 1.31616 * 119.99949 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99687 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.47271 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.46952 * 120.00155 * 16 14 12 19 19 H 1.48501 * 109.46572 * 239.99587 * 16 14 12 20 20 N 1.33770 * 106.53345 * 359.97438 * 9 8 7 21 21 N 1.28607 * 109.05949 * 0.02562 * 20 9 8 22 22 C 1.38309 * 119.97586 * 180.02562 * 2 1 3 23 23 F 1.35098 * 120.05668 * 0.03030 * 22 2 1 24 24 H 1.09001 * 109.47569 * 269.98657 * 1 2 3 25 25 H 1.09007 * 109.46595 * 29.98126 * 1 2 3 26 26 H 1.08997 * 109.47088 * 149.97980 * 1 2 3 27 27 H 1.07999 * 119.92862 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.95103 * 180.02562 * 4 3 2 29 29 H 1.07995 * 120.02168 * 180.25781 * 5 4 3 30 30 H 1.08003 * 126.97327 * 359.97438 * 8 7 6 31 31 H 1.08996 * 109.46778 * 214.99534 * 10 9 8 32 32 H 1.08997 * 109.47062 * 334.99799 * 10 9 8 33 33 H 0.96998 * 119.99952 * 359.97438 * 11 10 9 34 34 H 0.96999 * 120.00038 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1977 0.0000 4 6 3.5805 1.2018 0.0005 5 6 4.2773 0.0085 0.0060 6 6 3.5885 -1.1959 -0.0002 7 7 4.2936 -2.4090 -0.0005 8 6 5.6476 -2.5460 -0.0009 9 6 5.8891 -3.8781 -0.0017 10 6 7.2383 -4.5496 -0.0018 11 7 7.6215 -4.8757 1.3741 12 6 8.8173 -5.4948 1.6232 13 1 9.4776 -5.7430 0.8055 14 6 9.1807 -5.8034 2.9269 15 7 8.3762 -5.5005 3.9236 16 14 10.8116 -6.6485 3.2667 17 1 11.5259 -6.8793 1.9855 18 1 11.6408 -5.7880 4.1483 19 1 10.5641 -7.9505 3.9366 20 7 4.6952 -4.4814 -0.0011 21 7 3.7721 -3.5860 -0.0006 22 6 2.1980 -1.1981 -0.0005 23 9 1.5232 -2.3684 -0.0017 24 1 -0.3634 -0.0002 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6566 2.1322 -0.0004 28 1 4.1170 2.1392 0.0010 29 1 5.3572 0.0133 0.0106 30 1 6.3807 -1.7530 -0.0014 31 1 7.1885 -5.4647 -0.5917 32 1 7.9786 -3.8774 -0.4356 33 1 7.0286 -4.6525 2.1086 34 1 8.6302 -5.7158 4.8346 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899746451.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:10 Heat of formation + Delta-G solvation = 77.981372 kcal Electronic energy + Delta-G solvation = -20158.615695 eV Core-core repulsion = 16815.096893 eV Total energy + Delta-G solvation = -3343.518802 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.06167 -44.53962 -40.34114 -37.02265 -35.93254 -33.91531 -33.21433 -31.82882 -30.94674 -28.28128 -27.57010 -25.50060 -24.88679 -23.37739 -22.24612 -21.92608 -19.55784 -18.99889 -18.36073 -17.83462 -17.45732 -16.78370 -16.53891 -16.27690 -15.90856 -15.60535 -15.13058 -14.77146 -14.44075 -14.36223 -14.30409 -13.84127 -13.48152 -13.40148 -13.06558 -12.82985 -12.69411 -12.67952 -12.27169 -12.06928 -12.04046 -11.97572 -11.79663 -10.99488 -10.45233 -9.84278 -9.67982 -9.05139 -7.94498 -5.25942 -0.59300 -0.02862 0.82875 1.11853 1.30233 1.49818 1.51861 1.62115 2.41548 2.58574 2.89601 3.13767 3.36910 3.44505 3.66018 3.84927 3.93170 4.00150 4.10162 4.14313 4.17919 4.48325 4.60804 4.71511 4.73515 4.80884 4.92067 5.01467 5.11241 5.14460 5.17205 5.24502 5.48519 5.50480 5.80095 6.24478 7.28742 7.31254 8.00678 8.27310 9.29770 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.034757 B = 0.003491 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.410907 B = 8019.154060 C = 8258.944761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.107 4.107 3 C -0.072 4.072 4 C -0.089 4.089 5 C -0.097 4.097 6 C 0.057 3.943 7 N -0.244 5.244 8 C -0.019 4.019 9 C -0.027 4.027 10 C 0.237 3.763 11 N -0.741 5.741 12 C -0.243 4.243 13 H 0.088 0.912 14 C -0.079 4.079 15 N -0.974 5.974 16 Si 0.981 3.019 17 H -0.260 1.260 18 H -0.290 1.290 19 H -0.298 1.298 20 N -0.289 5.289 21 N -0.108 5.108 22 C 0.076 3.924 23 F -0.137 7.137 24 H 0.084 0.916 25 H 0.108 0.892 26 H 0.057 0.943 27 H 0.184 0.816 28 H 0.187 0.813 29 H 0.166 0.834 30 H 0.239 0.761 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.370 0.630 34 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.950 22.458 -10.949 28.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.108 4.108 3 C -0.090 4.090 4 C -0.108 4.108 5 C -0.117 4.117 6 C -0.035 4.035 7 N -0.031 5.031 8 C -0.167 4.167 9 C -0.164 4.164 10 C 0.109 3.891 11 N -0.383 5.383 12 C -0.374 4.374 13 H 0.105 0.895 14 C -0.271 4.271 15 N -0.625 5.625 16 Si 0.810 3.190 17 H -0.184 1.184 18 H -0.217 1.217 19 H -0.225 1.225 20 N -0.156 5.156 21 N -0.086 5.086 22 C 0.055 3.945 23 F -0.115 7.115 24 H 0.103 0.897 25 H 0.127 0.873 26 H 0.076 0.924 27 H 0.201 0.799 28 H 0.204 0.796 29 H 0.183 0.817 30 H 0.255 0.745 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.201 0.799 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -14.110 21.439 -11.042 27.940 hybrid contribution 1.210 -0.835 0.833 1.690 sum -12.900 20.605 -10.209 26.366 Atomic orbital electron populations 1.20851 0.87846 1.04565 1.03941 1.20300 0.98738 0.90483 1.01316 1.21665 0.94493 0.97714 0.95157 1.21626 0.94267 0.98116 0.96757 1.21335 1.02340 0.88852 0.99221 1.18346 0.90324 0.83390 1.11423 1.44793 1.06171 1.06084 1.46095 1.24081 0.84899 0.99936 1.07818 1.22453 0.95643 0.91966 1.06349 1.19032 0.86201 0.96566 0.87284 1.42531 1.21106 1.72128 1.02570 1.19755 0.95343 1.29596 0.92739 0.89458 1.25686 1.02535 1.03314 0.95521 1.69874 1.39094 1.54723 0.98806 0.84959 0.78891 0.77093 0.78089 1.18373 1.21725 1.22538 1.75034 0.98740 1.25134 1.16681 1.78450 1.22234 0.86587 1.21306 1.17768 0.87656 0.83026 1.06034 1.91533 1.79776 1.46566 1.93668 0.89711 0.87336 0.92361 0.79857 0.79571 0.81658 0.74472 0.94881 0.91083 0.79930 0.94064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.83 71.24 0.70 -0.62 16 2 C -0.11 -1.69 5.88 -19.84 -0.12 -1.81 16 3 C -0.07 -0.60 9.69 22.28 0.22 -0.38 16 4 C -0.09 -0.73 10.04 22.26 0.22 -0.51 16 5 C -0.10 -1.50 9.46 22.38 0.21 -1.29 16 6 C 0.06 1.46 6.69 38.10 0.25 1.72 16 7 N -0.24 -8.26 3.56 -186.90 -0.67 -8.93 16 8 C -0.02 -0.61 10.85 83.37 0.90 0.30 16 9 C -0.03 -1.09 6.61 41.60 0.28 -0.82 16 10 C 0.24 10.16 6.82 85.63 0.58 10.75 16 11 N -0.74 -39.91 5.59 -347.17 -1.94 -41.86 16 12 C -0.24 -13.83 9.99 84.03 0.84 -13.00 16 13 H 0.09 4.63 7.83 -2.91 -0.02 4.61 16 14 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 15 N -0.97 -61.99 13.06 21.65 0.28 -61.71 16 16 Si 0.98 46.79 29.55 68.60 2.03 48.82 16 17 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 18 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 19 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 20 N -0.29 -13.26 12.39 -48.58 -0.60 -13.86 16 21 N -0.11 -4.57 11.40 37.02 0.42 -4.15 16 22 C 0.08 1.95 7.22 22.48 0.16 2.11 16 23 F -0.14 -4.46 14.79 44.97 0.67 -3.79 16 24 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.11 0.53 8.09 -2.38 -0.02 0.52 16 26 H 0.06 0.86 7.64 -2.39 -0.02 0.84 16 27 H 0.18 0.02 8.06 -2.91 -0.02 -0.01 16 28 H 0.19 0.02 8.06 -2.91 -0.02 0.00 16 29 H 0.17 1.79 6.77 -2.91 -0.02 1.77 16 30 H 0.24 4.99 7.11 -2.91 -0.02 4.96 16 31 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.37 21.96 7.66 -92.71 -0.71 21.25 16 34 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -82.42 304.19 5.34 -77.08 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.43 Total: 16.10 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 4.72 Total: -7.71 kcal Atomic # 7 Polarization: -128.00 SS G_CDS: -2.50 Total: -130.50 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.67 Total: -3.79 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -82.42 5.34 -77.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899746451.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.060 kcal (2) G-P(sol) polarization free energy of solvation -82.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds