Wall clock time and date at job start Mon Mar 30 2020 01:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38139 * 119.90042 * 2 1 4 4 C 1.37992 * 120.32931 * 180.23422 * 3 2 1 5 5 C 1.39981 * 120.13002 * 359.49037 * 4 3 2 6 6 C 1.47182 * 120.10093 * 180.23418 * 5 4 3 7 7 O 1.21248 * 120.00010 * 359.97438 * 6 5 4 8 8 C 1.39576 * 119.80002 * 0.25251 * 5 4 3 9 9 C 1.39317 * 119.67516 * 0.02562 * 8 5 4 10 10 C 1.47740 * 120.06942 * 180.02562 * 9 8 5 11 11 O 1.21470 * 120.00659 * 173.74238 * 10 9 8 12 12 O 1.34717 * 119.99649 * 353.74128 * 10 9 8 13 13 C 1.45200 * 116.99977 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47047 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.46824 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.46813 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99937 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99679 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99903 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00260 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47227 * 90.00441 * 20 18 16 22 22 H 1.48499 * 109.47180 * 210.00130 * 20 18 16 23 23 H 1.48500 * 109.47131 * 330.00308 * 20 18 16 24 24 H 1.08994 * 109.47420 * 263.65117 * 1 2 3 25 25 H 1.09004 * 109.47402 * 23.65293 * 1 2 3 26 26 H 1.09005 * 109.47281 * 143.64575 * 1 2 3 27 27 H 1.07991 * 119.83312 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.93346 * 179.76814 * 4 3 2 29 29 H 1.08000 * 119.99958 * 180.02562 * 6 5 4 30 30 H 1.07995 * 120.16125 * 179.97438 * 8 5 4 31 31 H 1.08998 * 109.46923 * 300.00654 * 13 12 10 32 32 H 1.09004 * 109.46835 * 60.00164 * 13 12 10 33 33 H 1.09001 * 109.47201 * 299.99707 * 14 13 12 34 34 H 1.08992 * 109.46845 * 60.00260 * 14 13 12 35 35 H 1.08993 * 109.47129 * 300.00169 * 15 14 13 36 36 H 1.09004 * 109.46880 * 60.00289 * 15 14 13 37 37 H 0.96998 * 120.00054 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.1975 0.0000 4 6 3.5754 1.2078 -0.0049 5 6 4.2871 0.0025 0.0009 6 6 5.7589 0.0143 0.0009 7 8 6.3567 1.0691 -0.0046 8 6 3.5969 -1.2106 0.0063 9 6 2.2037 -1.2115 0.0053 10 6 1.4643 -2.4905 0.0116 11 8 0.2549 -2.4925 0.1254 12 8 2.1313 -3.6547 -0.1090 13 6 1.3401 -4.8722 -0.0954 14 6 2.2643 -6.0826 -0.2431 15 6 1.4306 -7.3655 -0.2281 16 6 2.3410 -8.5578 -0.3729 17 1 3.4074 -8.4147 -0.4667 18 6 1.8123 -9.8310 -0.3868 19 7 2.6068 -10.8715 -0.5126 20 14 -0.0321 -10.0783 -0.2253 21 1 -0.6521 -10.0744 -1.5747 22 1 -0.3009 -11.3790 0.4390 23 1 -0.6098 -8.9783 0.5881 24 1 -0.3634 -0.1136 1.0213 25 1 -0.3634 0.9413 -0.4123 26 1 -0.3634 -0.8277 -0.6092 27 1 1.6513 2.1302 0.0004 28 1 4.1073 2.1478 -0.0086 29 1 6.3064 -0.9167 0.0050 30 1 4.1401 -2.1440 0.0104 31 1 0.7970 -4.9420 0.8470 32 1 0.6310 -4.8539 -0.9230 33 1 2.8070 -6.0125 -1.1858 34 1 2.9737 -6.1010 0.5842 35 1 0.8882 -7.4353 0.7147 36 1 0.7209 -7.3472 -1.0552 37 1 2.2349 -11.7673 -0.5220 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909932953.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:39 Heat of formation + Delta-G solvation = -108.078332 kcal Electronic energy + Delta-G solvation = -19958.367844 eV Core-core repulsion = 16665.655690 eV Total energy + Delta-G solvation = -3292.712153 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.88912 -39.75664 -38.43874 -36.62647 -34.16815 -33.17620 -32.14723 -31.61437 -28.47298 -27.54901 -24.57060 -23.83720 -23.11768 -21.85021 -20.55753 -20.05025 -17.86125 -17.40300 -16.84500 -16.52241 -16.20162 -16.04811 -15.27528 -14.84002 -14.77245 -14.37320 -14.23696 -14.11165 -13.63989 -13.30503 -12.78767 -12.57727 -12.33626 -12.24702 -12.19534 -11.97661 -11.92666 -11.10328 -11.02344 -10.50750 -10.41842 -10.17782 -9.99686 -9.85840 -9.75952 -9.51230 -9.28890 -9.21810 -8.60093 -6.10280 -4.09642 0.12545 0.52597 1.88139 2.51122 2.64307 3.27190 3.35138 3.37902 3.39403 3.82605 4.23288 4.39852 4.43419 4.47472 4.66331 4.89471 5.04014 5.14760 5.22925 5.31726 5.38943 5.39768 5.46134 5.48062 5.62753 5.78796 5.84377 5.88786 6.02454 6.25193 6.33059 6.37168 6.59967 6.74183 7.02716 7.16060 7.27691 7.67234 7.75246 8.45943 8.93746 9.51124 11.02866 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.024732 B = 0.003218 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.853254 B = 8700.249158 C = 9796.857320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.014 3.986 3 C -0.150 4.150 4 C -0.026 4.026 5 C -0.215 4.215 6 C 0.387 3.613 7 O -0.463 6.463 8 C -0.004 4.004 9 C -0.140 4.140 10 C 0.504 3.496 11 O -0.502 6.502 12 O -0.352 6.352 13 C 0.067 3.933 14 C -0.102 4.102 15 C -0.010 4.010 16 C -0.523 4.523 17 H 0.074 0.926 18 C 0.068 3.932 19 N -0.901 5.901 20 Si 0.879 3.121 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.265 1.265 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.112 0.888 30 H 0.152 0.848 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.019 0.981 36 H 0.015 0.985 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.499 24.414 1.226 24.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.013 3.987 3 C -0.167 4.167 4 C -0.044 4.044 5 C -0.216 4.216 6 C 0.246 3.754 7 O -0.337 6.337 8 C -0.023 4.023 9 C -0.141 4.141 10 C 0.349 3.651 11 O -0.393 6.393 12 O -0.268 6.268 13 C -0.005 4.005 14 C -0.139 4.139 15 C -0.048 4.048 16 C -0.560 4.560 17 H 0.092 0.908 18 C -0.134 4.134 19 N -0.540 5.540 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.190 1.190 24 H 0.102 0.898 25 H 0.083 0.917 26 H 0.117 0.883 27 H 0.155 0.845 28 H 0.156 0.844 29 H 0.128 0.872 30 H 0.170 0.830 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.037 0.963 36 H 0.033 0.967 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.531 24.720 1.247 24.757 hybrid contribution -1.187 -0.494 0.081 1.288 sum -1.718 24.226 1.328 24.323 Atomic orbital electron populations 1.21251 0.89464 1.03748 1.04248 1.20364 0.97314 0.91254 0.89743 1.21029 0.94005 0.97634 1.04082 1.21671 0.93994 0.98215 0.90513 1.20935 0.97133 0.93799 1.09777 1.24105 0.87928 0.93628 0.69720 1.90521 1.71628 1.36450 1.35058 1.21806 0.92906 0.98387 0.89150 1.19013 0.93464 0.90720 1.10940 1.21001 0.85955 0.84726 0.73400 1.90784 1.14960 1.87845 1.45682 1.86530 1.42440 1.15133 1.82722 1.23546 0.94573 0.80179 1.02246 1.21571 0.98288 0.91317 1.02753 1.19521 0.96071 0.92442 0.96755 1.21046 0.95194 0.89172 1.50635 0.90780 1.25015 0.97952 0.95986 0.94445 1.69906 1.35132 0.98501 1.50433 0.86784 0.86080 0.77719 0.78755 1.20201 1.21275 1.18974 0.89816 0.91675 0.88276 0.84453 0.84373 0.87150 0.83023 0.91344 0.91370 0.91469 0.91447 0.96264 0.96707 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 8.71 36.00 0.31 -0.89 16 2 C 0.01 0.13 5.92 -104.09 -0.62 -0.48 16 3 C -0.15 -1.17 9.64 -39.71 -0.38 -1.55 16 4 C -0.03 -0.21 9.59 -39.02 -0.37 -0.58 16 5 C -0.22 -1.83 5.86 -105.11 -0.62 -2.44 16 6 C 0.39 3.06 11.45 34.36 0.39 3.46 16 7 O -0.46 -5.24 17.16 5.58 0.10 -5.14 16 8 C 0.00 -0.04 9.36 -38.68 -0.36 -0.40 16 9 C -0.14 -1.55 5.87 -105.04 -0.62 -2.17 16 10 C 0.50 6.97 7.82 34.61 0.27 7.24 16 11 O -0.50 -7.78 13.11 -19.24 -0.25 -8.03 16 12 O -0.35 -5.18 9.48 -40.54 -0.38 -5.57 16 13 C 0.07 1.10 5.48 37.16 0.20 1.30 16 14 C -0.10 -1.91 5.53 -26.73 -0.15 -2.06 16 15 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 16 C -0.52 -14.53 9.66 -34.44 -0.33 -14.87 16 17 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 18 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 19 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 20 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.15 6.54 56.52 0.37 -5.79 16 24 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.44 8.04 -51.93 -0.42 0.02 16 26 H 0.10 1.11 5.84 -51.93 -0.30 0.81 16 27 H 0.14 0.74 8.05 -52.49 -0.42 0.31 16 28 H 0.14 1.00 7.64 -52.49 -0.40 0.59 16 29 H 0.11 0.51 8.06 -52.49 -0.42 0.09 16 30 H 0.15 1.18 7.62 -52.49 -0.40 0.78 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 36 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 323.35 15.07 4.87 4.87 Total: -1.00 -32.48 323.35 -6.87 -39.35 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -4.83 Total: -3.56 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -2.48 Total: -11.96 kcal Atomic # 7 Polarization: -27.38 SS G_CDS: 0.77 Total: -26.60 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.54 Total: -18.74 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.48 -6.87 -39.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909932953.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.724 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds