Wall clock time and date at job start Mon Mar 30 2020 01:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38139 * 119.90042 * 2 1 4 4 C 1.37992 * 120.32931 * 180.23422 * 3 2 1 5 5 C 1.39981 * 120.13002 * 359.49037 * 4 3 2 6 6 C 1.47182 * 120.10093 * 180.23418 * 5 4 3 7 7 O 1.21248 * 120.00010 * 359.97438 * 6 5 4 8 8 C 1.39576 * 119.80002 * 0.25251 * 5 4 3 9 9 C 1.39317 * 119.67516 * 0.02562 * 8 5 4 10 10 C 1.47740 * 120.06942 * 180.02562 * 9 8 5 11 11 O 1.21470 * 120.00659 * 173.74238 * 10 9 8 12 12 O 1.34717 * 119.99649 * 353.74128 * 10 9 8 13 13 C 1.45200 * 116.99977 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47047 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.46824 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.46813 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99937 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99679 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99903 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00260 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47227 * 90.00441 * 20 18 16 22 22 H 1.48499 * 109.47180 * 210.00130 * 20 18 16 23 23 H 1.48500 * 109.47131 * 330.00308 * 20 18 16 24 24 H 1.08994 * 109.47420 * 263.65117 * 1 2 3 25 25 H 1.09004 * 109.47402 * 23.65293 * 1 2 3 26 26 H 1.09005 * 109.47281 * 143.64575 * 1 2 3 27 27 H 1.07991 * 119.83312 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.93346 * 179.76814 * 4 3 2 29 29 H 1.08000 * 119.99958 * 180.02562 * 6 5 4 30 30 H 1.07995 * 120.16125 * 179.97438 * 8 5 4 31 31 H 1.08998 * 109.46923 * 300.00654 * 13 12 10 32 32 H 1.09004 * 109.46835 * 60.00164 * 13 12 10 33 33 H 1.09001 * 109.47201 * 299.99707 * 14 13 12 34 34 H 1.08992 * 109.46845 * 60.00260 * 14 13 12 35 35 H 1.08993 * 109.47129 * 300.00169 * 15 14 13 36 36 H 1.09004 * 109.46880 * 60.00289 * 15 14 13 37 37 H 0.96998 * 120.00054 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.1975 0.0000 4 6 3.5754 1.2078 -0.0049 5 6 4.2871 0.0025 0.0009 6 6 5.7589 0.0143 0.0009 7 8 6.3567 1.0691 -0.0046 8 6 3.5969 -1.2106 0.0063 9 6 2.2037 -1.2115 0.0053 10 6 1.4643 -2.4905 0.0116 11 8 0.2549 -2.4925 0.1254 12 8 2.1313 -3.6547 -0.1090 13 6 1.3401 -4.8722 -0.0954 14 6 2.2643 -6.0826 -0.2431 15 6 1.4306 -7.3655 -0.2281 16 6 2.3410 -8.5578 -0.3729 17 1 3.4074 -8.4147 -0.4667 18 6 1.8123 -9.8310 -0.3868 19 7 2.6068 -10.8715 -0.5126 20 14 -0.0321 -10.0783 -0.2253 21 1 -0.6521 -10.0744 -1.5747 22 1 -0.3009 -11.3790 0.4390 23 1 -0.6098 -8.9783 0.5881 24 1 -0.3634 -0.1136 1.0213 25 1 -0.3634 0.9413 -0.4123 26 1 -0.3634 -0.8277 -0.6092 27 1 1.6513 2.1302 0.0004 28 1 4.1073 2.1478 -0.0086 29 1 6.3064 -0.9167 0.0050 30 1 4.1401 -2.1440 0.0104 31 1 0.7970 -4.9420 0.8470 32 1 0.6310 -4.8539 -0.9230 33 1 2.8070 -6.0125 -1.1858 34 1 2.9737 -6.1010 0.5842 35 1 0.8882 -7.4353 0.7147 36 1 0.7209 -7.3472 -1.0552 37 1 2.2349 -11.7673 -0.5220 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909932953.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:39 Heat of formation + Delta-G solvation = -126.339255 kcal Electronic energy + Delta-G solvation = -19959.159697 eV Core-core repulsion = 16665.655690 eV Total energy + Delta-G solvation = -3293.504006 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.83461 -40.58305 -39.22735 -37.77929 -35.93988 -33.97416 -33.82249 -32.59168 -29.58915 -28.87269 -25.69214 -24.51809 -24.44128 -22.80032 -22.07643 -21.09026 -19.01578 -18.79335 -18.12817 -17.70214 -17.17610 -16.77262 -16.29062 -16.05033 -15.86375 -15.50730 -15.31808 -14.81976 -14.73637 -14.59824 -14.46268 -13.82018 -13.73947 -13.26626 -12.97866 -12.90603 -12.83609 -12.65280 -12.55962 -12.02743 -11.96965 -11.75174 -11.38333 -11.35185 -11.17106 -10.82010 -10.76686 -10.22939 -9.91110 -8.29409 -6.34257 -0.59284 -0.19526 1.16611 1.37662 1.39216 1.50602 1.55439 1.64481 2.36374 2.67943 3.06047 3.22264 3.44764 3.70613 3.77920 3.99720 4.03070 4.04246 4.17814 4.38875 4.44124 4.50186 4.66178 4.72258 4.75537 4.76416 4.87037 4.92645 4.97973 5.15785 5.22144 5.26228 5.43530 5.50812 5.53438 5.63176 5.69143 6.26712 6.41706 6.63923 6.74247 7.30420 8.87117 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.024732 B = 0.003218 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.853254 B = 8700.249158 C = 9796.857320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.007 3.993 3 C -0.142 4.142 4 C -0.026 4.026 5 C -0.220 4.220 6 C 0.396 3.604 7 O -0.500 6.500 8 C 0.000 4.000 9 C -0.162 4.162 10 C 0.503 3.497 11 O -0.523 6.523 12 O -0.353 6.353 13 C 0.077 3.923 14 C -0.092 4.092 15 C -0.010 4.010 16 C -0.533 4.533 17 H 0.037 0.963 18 C 0.005 3.995 19 N -0.950 5.950 20 Si 0.949 3.051 21 H -0.266 1.266 22 H -0.285 1.285 23 H -0.245 1.245 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.166 0.834 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.163 0.837 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.025 0.975 36 H 0.024 0.976 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.631 26.377 1.422 26.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.006 3.994 3 C -0.159 4.159 4 C -0.044 4.044 5 C -0.221 4.221 6 C 0.257 3.743 7 O -0.375 6.375 8 C -0.018 4.018 9 C -0.163 4.163 10 C 0.350 3.650 11 O -0.415 6.415 12 O -0.270 6.270 13 C 0.004 3.996 14 C -0.130 4.130 15 C -0.047 4.047 16 C -0.571 4.571 17 H 0.055 0.945 18 C -0.192 4.192 19 N -0.591 5.591 20 Si 0.772 3.228 21 H -0.191 1.191 22 H -0.211 1.211 23 H -0.168 1.168 24 H 0.099 0.901 25 H 0.109 0.891 26 H 0.094 0.906 27 H 0.183 0.817 28 H 0.167 0.833 29 H 0.165 0.835 30 H 0.181 0.819 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.042 0.958 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.660 26.703 1.443 26.794 hybrid contribution -0.730 -1.033 0.009 1.265 sum -2.389 25.670 1.452 25.822 Atomic orbital electron populations 1.21200 0.89281 1.04186 1.03754 1.20536 0.97628 0.91422 0.89788 1.21289 0.93948 0.97979 1.02725 1.21942 0.94344 0.98639 0.89453 1.21093 0.97705 0.93687 1.09634 1.24593 0.87613 0.94224 0.67849 1.90522 1.72053 1.37930 1.36984 1.21893 0.92221 0.99220 0.88481 1.19010 0.94195 0.89729 1.13342 1.21497 0.85966 0.84973 0.72605 1.90781 1.15856 1.88013 1.46815 1.86506 1.42256 1.15117 1.83077 1.23208 0.93758 0.80085 1.02592 1.21319 0.98048 0.90962 1.02645 1.19453 0.95780 0.92324 0.97182 1.21417 0.94446 0.91312 1.49913 0.94499 1.25998 1.03448 0.95625 0.94153 1.70059 1.37659 0.99178 1.52180 0.85677 0.79502 0.78177 0.79433 1.19134 1.21065 1.16837 0.90135 0.89097 0.90550 0.81654 0.83328 0.83496 0.81914 0.91026 0.91001 0.91685 0.91627 0.95645 0.95782 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.71 71.23 0.62 -1.54 16 2 C 0.01 0.12 5.92 -19.52 -0.12 0.00 16 3 C -0.14 -1.84 9.64 22.19 0.21 -1.62 16 4 C -0.03 -0.36 9.59 22.63 0.22 -0.14 16 5 C -0.22 -3.28 5.86 -20.18 -0.12 -3.40 16 6 C 0.40 5.42 11.45 70.17 0.80 6.22 16 7 O -0.50 -10.54 17.16 -2.93 -0.05 -10.59 16 8 C 0.00 0.00 9.36 22.85 0.21 0.22 16 9 C -0.16 -3.38 5.87 -20.14 -0.12 -3.49 16 10 C 0.50 13.48 7.82 70.33 0.55 14.03 16 11 O -0.52 -15.91 13.11 19.93 0.26 -15.65 16 12 O -0.35 -10.03 9.48 -56.27 -0.53 -10.56 16 13 C 0.08 2.40 5.48 71.98 0.39 2.79 16 14 C -0.09 -3.39 5.53 30.60 0.17 -3.23 16 15 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 16 C -0.53 -30.05 9.66 25.60 0.25 -29.81 16 17 H 0.04 2.28 7.99 -2.91 -0.02 2.25 16 18 C 0.00 0.27 5.47 84.65 0.46 0.73 16 19 N -0.95 -58.99 13.96 21.45 0.30 -58.69 16 20 Si 0.95 43.40 27.47 68.60 1.88 45.29 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 23 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 24 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.09 1.01 8.04 -2.39 -0.02 0.99 16 26 H 0.08 1.67 5.84 -2.38 -0.01 1.66 16 27 H 0.17 1.17 8.05 -2.92 -0.02 1.14 16 28 H 0.15 1.78 7.64 -2.91 -0.02 1.76 16 29 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 30 H 0.16 2.23 7.62 -2.91 -0.02 2.21 16 31 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.03 1.11 7.20 -2.39 -0.02 1.09 16 36 H 0.02 1.03 7.57 -2.38 -0.02 1.02 16 37 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -70.93 323.35 6.54 -64.40 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: 1.01 Total: 5.37 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 3.66 Total: -19.56 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.30 Total: -58.69 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.32 Total: -36.80 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.88 Total: 45.29 kcal Total: -70.93 6.54 -64.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909932953.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.942 kcal (2) G-P(sol) polarization free energy of solvation -70.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds