Wall clock time and date at job start Mon Mar 30 2020 01:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00551 * 2 1 4 4 H 1.48497 * 109.47302 * 270.00232 * 3 2 1 5 5 H 1.48501 * 109.47058 * 30.00230 * 3 2 1 6 6 H 1.48506 * 109.47281 * 149.99835 * 3 2 1 7 7 C 1.37885 * 119.99389 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99910 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99781 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47321 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47452 * 180.02562 * 10 9 7 12 12 O 1.45203 * 109.47397 * 180.02562 * 11 10 9 13 13 C 1.34222 * 117.00192 * 180.02562 * 12 11 10 14 14 O 1.20823 * 120.00416 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00050 * 180.02562 * 13 12 11 16 16 H 1.08996 * 110.66907 * 301.78091 * 15 13 12 17 17 C 1.54707 * 110.74881 * 64.99770 * 15 13 12 18 18 C 1.51645 * 101.92642 * 143.79109 * 17 15 13 19 19 C 1.37747 * 132.17499 * 164.46435 * 18 17 15 20 20 C 1.38339 * 119.97970 * 180.49267 * 19 18 17 21 21 C 1.38285 * 119.76970 * 359.97438 * 20 19 18 22 22 C 1.37935 * 120.35024 * 359.86135 * 21 20 19 23 23 C 1.38890 * 107.04298 * 344.63168 * 18 17 15 24 24 O 1.36132 * 111.22883 * 358.90315 * 23 18 17 25 25 H 0.97006 * 119.99321 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.46767 * 60.00556 * 9 7 2 27 27 H 1.08998 * 109.47337 * 300.00061 * 9 7 2 28 28 H 1.09006 * 109.47011 * 60.00155 * 10 9 7 29 29 H 1.09007 * 109.47397 * 300.01069 * 10 9 7 30 30 H 1.09000 * 109.46994 * 60.00764 * 11 10 9 31 31 H 1.08998 * 109.47225 * 300.00144 * 11 10 9 32 32 H 1.09002 * 110.93932 * 25.63521 * 17 15 13 33 33 H 1.08997 * 110.94272 * 261.94586 * 17 15 13 34 34 H 1.07998 * 120.00770 * 0.49832 * 19 18 17 35 35 H 1.08007 * 120.11537 * 179.97438 * 20 19 18 36 36 H 1.08003 * 119.82840 * 180.14090 * 21 20 19 37 37 H 1.07997 * 119.87917 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 1.4643 -2.1294 -0.0014 9 6 3.5114 -1.1943 -0.0011 10 6 4.0213 -2.6368 -0.0010 11 6 5.5513 -2.6369 -0.0009 12 8 6.0352 -4.0059 -0.0014 13 6 7.3659 -4.1819 -0.0009 14 8 8.1020 -3.2238 0.0004 15 6 7.9418 -5.5745 -0.0020 16 1 7.5920 -6.1362 0.8642 17 6 7.5868 -6.3134 -1.3140 18 6 8.8425 -7.1256 -1.5658 19 6 9.1008 -8.1966 -2.3926 20 6 10.3630 -8.7625 -2.4169 21 6 11.3614 -8.2487 -1.6097 22 6 11.1059 -7.1741 -0.7835 23 6 9.8385 -6.5971 -0.7549 24 8 9.3786 -5.5356 -0.0374 25 1 -0.4849 0.8402 0.0004 26 1 3.8751 -0.6807 0.8890 27 1 3.8745 -0.6803 -0.8911 28 1 3.6576 -3.1508 -0.8908 29 1 3.6582 -3.1505 0.8892 30 1 5.9146 -2.1232 0.8891 31 1 5.9147 -2.1232 -0.8909 32 1 7.4116 -5.6058 -2.1244 33 1 6.7238 -6.9641 -1.1735 34 1 8.3183 -8.5944 -3.0217 35 1 10.5679 -9.6026 -3.0640 36 1 12.3477 -8.6883 -1.6296 37 1 11.8914 -6.7787 -0.1566 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914619833.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:40 Heat of formation + Delta-G solvation = -115.727727 kcal Electronic energy + Delta-G solvation = -20023.792712 eV Core-core repulsion = 16730.748856 eV Total energy + Delta-G solvation = -3293.043856 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.61189 -41.26992 -38.55751 -37.80449 -35.98306 -34.10227 -33.72938 -31.12667 -30.98294 -29.35582 -26.17916 -24.68427 -23.37628 -22.70826 -22.20835 -21.93850 -19.25153 -18.99445 -18.33280 -18.08727 -18.05007 -17.32715 -16.71938 -16.30646 -15.73265 -15.43160 -15.12388 -14.82080 -14.55246 -14.34498 -14.20732 -14.04979 -13.86848 -13.77029 -13.14649 -12.88703 -12.70393 -12.62011 -12.34406 -12.13859 -12.05326 -11.79758 -11.77599 -11.48799 -11.43432 -11.37159 -10.78262 -9.87999 -9.22423 -8.30968 -6.35711 0.27710 0.37258 0.85088 1.00170 1.36176 1.37875 1.49193 2.29087 2.34753 2.74232 3.04316 3.15884 3.24418 3.62756 3.80694 3.88879 3.96480 3.97044 4.20287 4.28992 4.33754 4.48928 4.52130 4.64161 4.65981 4.71653 4.74595 4.94142 5.04975 5.18279 5.33570 5.41007 5.44684 5.47452 5.53060 5.57995 5.61144 6.10840 6.24802 6.46682 6.72221 7.28766 8.85431 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.047445 B = 0.002730 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.010078 B =10253.244494 C =10608.408144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.005 3.995 3 Si 0.948 3.052 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.533 4.533 8 H 0.038 0.962 9 C -0.011 4.011 10 C -0.091 4.091 11 C 0.073 3.927 12 O -0.343 6.343 13 C 0.465 3.535 14 O -0.526 6.526 15 C 0.093 3.907 16 H 0.157 0.843 17 C -0.091 4.091 18 C -0.182 4.182 19 C -0.072 4.072 20 C -0.143 4.143 21 C -0.084 4.084 22 C -0.147 4.147 23 C 0.068 3.932 24 O -0.307 6.307 25 H 0.267 0.733 26 H 0.025 0.975 27 H 0.024 0.976 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.137 0.863 34 H 0.150 0.850 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.993 -19.715 -3.940 30.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.192 4.192 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.170 1.170 7 C -0.570 4.570 8 H 0.056 0.944 9 C -0.048 4.048 10 C -0.129 4.129 11 C 0.000 4.000 12 O -0.259 6.259 13 C 0.308 3.692 14 O -0.414 6.414 15 C 0.036 3.964 16 H 0.174 0.826 17 C -0.127 4.127 18 C -0.183 4.183 19 C -0.090 4.090 20 C -0.161 4.161 21 C -0.102 4.102 22 C -0.165 4.165 23 C 0.024 3.976 24 O -0.222 6.222 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.155 0.845 34 H 0.168 0.832 35 H 0.177 0.823 36 H 0.179 0.821 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 23.144 -19.103 -3.821 30.252 hybrid contribution -0.336 1.340 0.173 1.392 sum 22.809 -17.763 -3.648 29.139 Atomic orbital electron populations 1.70057 1.08235 1.28225 1.52391 1.25989 0.95630 1.03458 0.94110 0.85686 0.79523 0.78371 0.79261 1.19126 1.20953 1.17037 1.21391 0.91617 0.93393 1.50645 0.94394 1.19462 0.94380 0.93767 0.97206 1.21326 0.90119 0.98410 1.02995 1.23315 0.95461 0.78413 1.02793 1.86448 1.22520 1.33791 1.83160 1.23518 0.81350 0.92000 0.72312 1.90692 1.61267 1.43902 1.45569 1.22830 0.79750 0.89810 1.04014 0.82645 1.21732 0.98229 0.98334 0.94453 1.20894 0.95513 1.00501 1.01399 1.20697 0.98468 0.93193 0.96641 1.21508 0.92240 1.01697 1.00620 1.21296 1.01013 0.93994 0.93856 1.20583 0.93974 0.98323 1.03663 1.19945 0.96297 0.88170 0.93187 1.86864 1.20206 1.44169 1.70929 0.92406 0.95688 0.95757 0.91377 0.91478 0.90963 0.90917 0.89138 0.84523 0.83210 0.82323 0.82128 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.12 13.96 21.45 0.30 -58.82 16 2 C 0.01 0.30 5.47 84.66 0.46 0.77 16 3 Si 0.95 43.93 27.47 68.60 1.88 45.82 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 7 C -0.53 -30.26 9.66 25.60 0.25 -30.01 16 8 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 9 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 10 C -0.09 -3.42 5.53 30.59 0.17 -3.25 16 11 C 0.07 2.39 5.47 71.98 0.39 2.78 16 12 O -0.34 -10.05 10.22 -51.34 -0.52 -10.57 16 13 C 0.47 13.52 7.26 71.24 0.52 14.04 16 14 O -0.53 -19.21 16.33 28.16 0.46 -18.75 16 15 C 0.09 2.05 4.15 30.43 0.13 2.17 16 16 H 0.16 2.47 8.14 -2.39 -0.02 2.45 16 17 C -0.09 -1.58 6.63 30.73 0.20 -1.38 16 18 C -0.18 -3.33 6.27 -19.52 -0.12 -3.45 16 19 C -0.07 -0.96 10.03 22.18 0.22 -0.74 16 20 C -0.14 -1.53 10.07 22.31 0.22 -1.31 16 21 C -0.08 -0.99 10.02 22.21 0.22 -0.77 16 22 C -0.15 -2.57 10.06 22.45 0.23 -2.34 16 23 C 0.07 1.51 7.04 22.68 0.16 1.67 16 24 O -0.31 -8.24 10.40 -76.87 -0.80 -9.04 16 25 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 26 H 0.02 1.11 7.20 -2.38 -0.02 1.09 16 27 H 0.02 1.06 7.57 -2.39 -0.02 1.05 16 28 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 29 H 0.07 2.51 8.14 -2.38 -0.02 2.50 16 30 H 0.07 2.33 8.13 -2.39 -0.02 2.31 16 31 H 0.07 2.33 8.13 -2.39 -0.02 2.31 16 32 H 0.09 1.71 7.92 -2.39 -0.02 1.69 16 33 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 36 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 37 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -72.96 320.88 5.50 -67.46 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 1.01 Total: 6.10 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 3.17 Total: -22.19 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.30 Total: -58.82 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.86 Total: -38.36 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.82 kcal Total: -72.96 5.50 -67.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914619833.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.268 kcal (2) G-P(sol) polarization free energy of solvation -72.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds