Wall clock time and date at job start Mon Mar 30 2020 01:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99701 * 2 1 4 4 H 1.48500 * 109.47353 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46939 * 299.99393 * 3 2 1 6 6 H 1.48500 * 109.47607 * 59.99464 * 3 2 1 7 7 C 1.37880 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99940 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99798 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47040 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47460 * 179.97438 * 10 9 7 12 12 O 1.45197 * 109.47682 * 179.97438 * 11 10 9 13 13 C 1.34750 * 117.00555 * 179.97438 * 12 11 10 14 14 O 1.21506 * 119.99792 * 0.02562 * 13 12 11 15 15 C 1.47463 * 120.00358 * 180.02562 * 13 12 11 16 16 C 1.39816 * 120.27259 * 0.02562 * 15 13 12 17 17 C 1.37445 * 120.19867 * 180.19516 * 16 15 13 18 18 C 1.39605 * 120.43866 * 0.05138 * 17 16 15 19 19 C 1.39298 * 119.09608 * 359.57004 * 18 17 16 20 20 C 1.37205 * 120.92719 * 0.59311 * 19 18 17 21 21 C 1.51677 * 106.93823 * 180.59346 * 19 18 17 22 22 C 1.54704 * 101.91226 * 15.73844 * 21 19 18 23 23 O 1.35981 * 129.70341 * 179.55586 * 18 17 16 24 24 H 0.96995 * 120.00473 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47710 * 60.00125 * 9 7 2 26 26 H 1.09001 * 109.47411 * 300.00010 * 9 7 2 27 27 H 1.09004 * 109.47165 * 60.00210 * 10 9 7 28 28 H 1.09002 * 109.47508 * 300.00161 * 10 9 7 29 29 H 1.09006 * 109.47029 * 59.99660 * 11 10 9 30 30 H 1.09001 * 109.47310 * 300.00157 * 11 10 9 31 31 H 1.08001 * 119.89932 * 0.18035 * 16 15 13 32 32 H 1.07997 * 119.77642 * 180.02562 * 17 16 15 33 33 H 1.08001 * 120.04989 * 179.61417 * 20 19 18 34 34 H 1.09002 * 110.94940 * 257.57139 * 21 19 18 35 35 H 1.09001 * 110.94488 * 133.90140 * 21 19 18 36 36 H 1.09001 * 110.73888 * 92.89179 * 22 21 19 37 37 H 1.09005 * 110.73767 * 216.04098 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4806 -4.9870 0.0025 12 8 2.4241 -6.0906 0.0031 13 6 1.9092 -7.3359 0.0042 14 8 0.7046 -7.4952 0.0042 15 6 2.8075 -8.5053 0.0055 16 6 4.1945 -8.3287 0.0060 17 6 5.0304 -9.4197 0.0031 18 6 4.5050 -10.7131 -0.0014 19 6 3.1224 -10.8827 0.0061 20 6 2.2792 -9.8004 0.0057 21 6 2.8605 -12.3767 0.0137 22 6 4.2425 -12.9411 0.4199 23 8 5.1474 -11.9116 -0.0129 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5572 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8714 -3.6038 0.8923 28 1 2.8728 -3.6047 -0.8877 29 1 0.8543 -5.0455 -0.8878 30 1 0.8535 -5.0442 0.8922 31 1 4.6102 -7.3319 0.0085 32 1 6.1007 -9.2754 0.0040 33 1 1.2094 -9.9483 0.0053 34 1 2.5725 -12.7269 -0.9775 35 1 2.1016 -12.6355 0.7521 36 1 4.3013 -13.0779 1.4997 37 1 4.4439 -13.8788 -0.0981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914641257.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:20 Heat of formation + Delta-G solvation = -107.865460 kcal Electronic energy + Delta-G solvation = -19815.652033 eV Core-core repulsion = 16522.949111 eV Total energy + Delta-G solvation = -3292.702923 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.52698 -40.11898 -37.63251 -36.29748 -33.98685 -33.15416 -31.75055 -30.72953 -29.66693 -27.14646 -24.78088 -23.50755 -22.91272 -22.18496 -20.70971 -20.29227 -17.90203 -17.78709 -16.86984 -16.69075 -16.30100 -16.20434 -16.06831 -14.50007 -14.47329 -14.31157 -14.09513 -13.65471 -13.40525 -13.34324 -12.94934 -12.69853 -12.23604 -12.15664 -12.11768 -11.86503 -11.25811 -11.15369 -10.98028 -10.65920 -10.63068 -10.39971 -10.37932 -9.71556 -9.51299 -9.31380 -9.14567 -8.57016 -8.38762 -6.03276 -4.06191 0.48893 0.97643 2.46231 2.75946 2.90465 3.30444 3.37896 3.42224 3.49301 3.97292 4.15112 4.42984 4.44305 4.53752 4.70054 4.84395 4.96565 5.00656 5.20360 5.28238 5.31168 5.32810 5.59453 5.62149 5.65610 5.79033 5.93541 6.01745 6.05588 6.13386 6.49758 6.54949 6.71121 6.84131 6.98968 7.61059 7.71897 7.92867 7.95521 8.36372 9.00374 9.58137 11.08235 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.049733 B = 0.002581 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.869342 B =10847.317845 C =11366.311281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.023 3.977 10 C -0.109 4.109 11 C 0.069 3.931 12 O -0.353 6.353 13 C 0.508 3.492 14 O -0.512 6.512 15 C -0.151 4.151 16 C -0.023 4.023 17 C -0.152 4.152 18 C 0.138 3.862 19 C -0.192 4.192 20 C -0.005 4.005 21 C -0.108 4.108 22 C 0.050 3.950 23 O -0.301 6.301 24 H 0.261 0.739 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.152 0.848 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.540 -26.340 0.659 27.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.004 4.004 12 O -0.270 6.270 13 C 0.353 3.647 14 O -0.403 6.403 15 C -0.152 4.152 16 C -0.041 4.041 17 C -0.170 4.170 18 C 0.092 3.908 19 C -0.193 4.193 20 C -0.023 4.023 21 C -0.145 4.145 22 C -0.024 4.024 23 O -0.214 6.214 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.170 0.830 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.255 -26.288 0.603 27.560 hybrid contribution 0.026 0.900 0.022 0.901 sum 8.281 -25.388 0.625 26.712 Atomic orbital electron populations 1.69972 1.06091 1.26656 1.50654 1.25038 0.94881 0.99391 0.95230 0.86490 0.80090 0.83562 0.77593 1.19666 1.20986 1.20980 1.21209 0.93158 0.90656 1.50826 0.92362 1.19059 0.93857 0.90754 0.97710 1.21769 0.99949 0.90924 1.02000 1.23533 0.91187 0.83367 1.02270 1.86531 1.42387 1.14767 1.83313 1.20880 0.86949 0.83786 0.73074 1.90828 1.16156 1.87026 1.46260 1.19014 0.93141 0.91142 1.11936 1.21298 0.91620 0.99482 0.91677 1.20257 1.01108 0.88030 1.07629 1.19965 0.90557 0.87225 0.93103 1.20617 0.93374 0.95617 1.09720 1.20297 1.00414 0.89117 0.92521 1.21796 0.98364 0.90458 1.03886 1.23900 0.86820 0.90892 1.00821 1.86800 1.38646 1.14228 1.81735 0.92946 0.96208 0.96215 0.92100 0.92090 0.91415 0.91407 0.83048 0.84391 0.84199 0.88854 0.88662 0.90154 0.87281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.56 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.11 -2.25 5.53 -26.73 -0.15 -2.40 16 11 C 0.07 1.29 5.48 37.16 0.20 1.50 16 12 O -0.35 -5.99 9.48 -40.63 -0.38 -6.37 16 13 C 0.51 8.20 7.89 34.49 0.27 8.47 16 14 O -0.51 -9.49 16.15 -19.27 -0.31 -9.80 16 15 C -0.15 -1.95 5.88 -104.94 -0.62 -2.57 16 16 C -0.02 -0.25 9.59 -39.28 -0.38 -0.63 16 17 C -0.15 -1.49 10.05 -39.36 -0.40 -1.89 16 18 C 0.14 1.40 7.05 -38.68 -0.27 1.13 16 19 C -0.19 -1.87 6.26 -104.12 -0.65 -2.52 16 20 C -0.01 -0.06 9.58 -39.35 -0.38 -0.44 16 21 C -0.11 -0.67 7.12 -26.50 -0.19 -0.86 16 22 C 0.05 0.28 8.00 38.05 0.30 0.59 16 23 O -0.30 -2.81 11.09 -19.68 -0.22 -3.03 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.15 1.52 7.61 -52.49 -0.40 1.12 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.14 1.52 7.66 -52.49 -0.40 1.12 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 323.61 15.07 4.88 4.88 Total: -1.00 -32.60 323.61 -8.11 -40.71 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -4.99 Total: -4.16 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -2.80 Total: -12.63 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.74 Total: -26.16 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.91 Total: -19.20 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.60 -8.11 -40.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914641257.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.159 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds