Wall clock time and date at job start Mon Mar 30 2020 01:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99701 * 2 1 4 4 H 1.48500 * 109.47353 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46939 * 299.99393 * 3 2 1 6 6 H 1.48500 * 109.47607 * 59.99464 * 3 2 1 7 7 C 1.37880 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99940 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99798 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47040 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47460 * 179.97438 * 10 9 7 12 12 O 1.45197 * 109.47682 * 179.97438 * 11 10 9 13 13 C 1.34750 * 117.00555 * 179.97438 * 12 11 10 14 14 O 1.21506 * 119.99792 * 0.02562 * 13 12 11 15 15 C 1.47463 * 120.00358 * 180.02562 * 13 12 11 16 16 C 1.39816 * 120.27259 * 0.02562 * 15 13 12 17 17 C 1.37445 * 120.19867 * 180.19516 * 16 15 13 18 18 C 1.39605 * 120.43866 * 0.05138 * 17 16 15 19 19 C 1.39298 * 119.09608 * 359.57004 * 18 17 16 20 20 C 1.37205 * 120.92719 * 0.59311 * 19 18 17 21 21 C 1.51677 * 106.93823 * 180.59346 * 19 18 17 22 22 C 1.54704 * 101.91226 * 15.73844 * 21 19 18 23 23 O 1.35981 * 129.70341 * 179.55586 * 18 17 16 24 24 H 0.96995 * 120.00473 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47710 * 60.00125 * 9 7 2 26 26 H 1.09001 * 109.47411 * 300.00010 * 9 7 2 27 27 H 1.09004 * 109.47165 * 60.00210 * 10 9 7 28 28 H 1.09002 * 109.47508 * 300.00161 * 10 9 7 29 29 H 1.09006 * 109.47029 * 59.99660 * 11 10 9 30 30 H 1.09001 * 109.47310 * 300.00157 * 11 10 9 31 31 H 1.08001 * 119.89932 * 0.18035 * 16 15 13 32 32 H 1.07997 * 119.77642 * 180.02562 * 17 16 15 33 33 H 1.08001 * 120.04989 * 179.61417 * 20 19 18 34 34 H 1.09002 * 110.94940 * 257.57139 * 21 19 18 35 35 H 1.09001 * 110.94488 * 133.90140 * 21 19 18 36 36 H 1.09001 * 110.73888 * 92.89179 * 22 21 19 37 37 H 1.09005 * 110.73767 * 216.04098 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4806 -4.9870 0.0025 12 8 2.4241 -6.0906 0.0031 13 6 1.9092 -7.3359 0.0042 14 8 0.7046 -7.4952 0.0042 15 6 2.8075 -8.5053 0.0055 16 6 4.1945 -8.3287 0.0060 17 6 5.0304 -9.4197 0.0031 18 6 4.5050 -10.7131 -0.0014 19 6 3.1224 -10.8827 0.0061 20 6 2.2792 -9.8004 0.0057 21 6 2.8605 -12.3767 0.0137 22 6 4.2425 -12.9411 0.4199 23 8 5.1474 -11.9116 -0.0129 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5572 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8714 -3.6038 0.8923 28 1 2.8728 -3.6047 -0.8877 29 1 0.8543 -5.0455 -0.8878 30 1 0.8535 -5.0442 0.8922 31 1 4.6102 -7.3319 0.0085 32 1 6.1007 -9.2754 0.0040 33 1 1.2094 -9.9483 0.0053 34 1 2.5725 -12.7269 -0.9775 35 1 2.1016 -12.6355 0.7521 36 1 4.3013 -13.0779 1.4997 37 1 4.4439 -13.8788 -0.0981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914641257.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:19 Heat of formation + Delta-G solvation = -125.962522 kcal Electronic energy + Delta-G solvation = -19816.436781 eV Core-core repulsion = 16522.949111 eV Total energy + Delta-G solvation = -3293.487670 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.26396 -41.37078 -38.54198 -37.65396 -35.93608 -33.87004 -33.63914 -31.67135 -30.34128 -28.98718 -26.03916 -24.66263 -24.07570 -22.89257 -22.17110 -21.80083 -18.99668 -18.59765 -18.48787 -17.78138 -17.68065 -17.34176 -16.97457 -16.48268 -15.68254 -15.37145 -15.20282 -14.62720 -14.30950 -14.15101 -14.08006 -13.89767 -13.76502 -13.61488 -13.45223 -12.85202 -12.68755 -12.50318 -12.39168 -12.09561 -11.93836 -11.86341 -11.85062 -11.45995 -11.41906 -11.22111 -10.57815 -10.09916 -9.35347 -8.21656 -6.33056 -0.44395 0.19067 1.37238 1.41833 1.42187 1.53723 1.57566 2.17810 2.41749 2.59602 3.12347 3.35980 3.52666 3.60740 3.77641 4.00016 4.04778 4.05587 4.15535 4.23560 4.39108 4.42048 4.60819 4.75346 4.78754 4.80065 4.86447 4.98244 5.02168 5.07768 5.15760 5.20702 5.35888 5.38419 5.50637 5.64102 5.80546 6.00020 6.19278 6.62573 6.83216 7.36484 8.90865 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.049733 B = 0.002581 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.869342 B =10847.317845 C =11366.311281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.970 3.030 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.078 3.922 12 O -0.350 6.350 13 C 0.508 3.492 14 O -0.544 6.544 15 C -0.175 4.175 16 C -0.021 4.021 17 C -0.153 4.153 18 C 0.138 3.862 19 C -0.195 4.195 20 C -0.011 4.011 21 C -0.107 4.107 22 C 0.046 3.954 23 O -0.312 6.312 24 H 0.264 0.736 25 H -0.003 1.003 26 H -0.003 1.003 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.138 0.862 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.623 -27.788 0.745 29.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.794 3.206 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.012 4.012 10 C -0.130 4.130 11 C 0.005 3.995 12 O -0.267 6.267 13 C 0.356 3.644 14 O -0.436 6.436 15 C -0.176 4.176 16 C -0.039 4.039 17 C -0.171 4.171 18 C 0.091 3.909 19 C -0.196 4.196 20 C -0.030 4.030 21 C -0.143 4.143 22 C -0.028 4.028 23 O -0.225 6.225 24 H 0.073 0.927 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.176 0.824 32 H 0.177 0.823 33 H 0.156 0.844 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.112 0.888 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 10.359 -27.765 0.692 29.643 hybrid contribution -0.596 1.177 -0.001 1.319 sum 9.763 -26.588 0.690 28.333 Atomic orbital electron populations 1.70106 1.07901 1.27869 1.51585 1.26027 0.95801 1.03581 0.94649 0.85326 0.79132 0.78422 0.77722 1.18306 1.20438 1.20413 1.21651 0.93776 0.91799 1.50648 0.91584 1.18944 0.94292 0.92510 0.95470 1.21459 0.98733 0.90124 1.02724 1.23181 0.90962 0.83447 1.01914 1.86510 1.41621 1.14934 1.83594 1.21483 0.87155 0.83902 0.71907 1.90805 1.17568 1.87204 1.48052 1.18931 0.93479 0.90261 1.14936 1.21368 0.90827 1.00355 0.91359 1.20471 1.02057 0.87702 1.06891 1.20201 0.90873 0.87809 0.92029 1.20951 0.93132 0.97117 1.08394 1.20332 1.00670 0.89101 0.92864 1.21942 0.99382 0.87794 1.05214 1.24246 0.85584 0.90817 1.02149 1.86796 1.39786 1.14381 1.81577 0.92691 0.98500 0.98490 0.91279 0.91295 0.91879 0.91836 0.82404 0.82257 0.84403 0.87697 0.86963 0.88806 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 2 C 0.00 -0.17 5.46 84.66 0.46 0.30 16 3 Si 0.97 44.17 29.54 68.60 2.03 46.19 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.54 -30.69 9.11 25.60 0.23 -30.46 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.03 1.33 4.97 29.85 0.15 1.47 16 10 C -0.09 -3.87 5.53 30.59 0.17 -3.70 16 11 C 0.08 2.99 5.48 71.98 0.39 3.38 16 12 O -0.35 -11.94 9.48 -56.61 -0.54 -12.48 16 13 C 0.51 16.71 7.89 70.25 0.55 17.27 16 14 O -0.54 -20.79 16.15 19.82 0.32 -20.47 16 15 C -0.17 -4.51 5.88 -20.07 -0.12 -4.62 16 16 C -0.02 -0.44 9.59 22.46 0.22 -0.23 16 17 C -0.15 -2.74 10.05 22.41 0.23 -2.51 16 18 C 0.14 2.52 7.05 22.85 0.16 2.68 16 19 C -0.20 -3.47 6.26 -19.54 -0.12 -3.59 16 20 C -0.01 -0.25 9.58 22.42 0.21 -0.04 16 21 C -0.11 -1.03 7.12 30.74 0.22 -0.81 16 22 C 0.05 0.36 8.00 72.56 0.58 0.94 16 23 O -0.31 -4.97 11.09 -93.33 -1.04 -6.01 16 24 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 25 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 26 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 27 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.07 2.75 8.14 -2.39 -0.02 2.74 16 29 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 30 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.16 3.02 7.61 -2.91 -0.02 3.00 16 32 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 33 H 0.14 3.04 7.66 -2.91 -0.02 3.02 16 34 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.14 0.32 8.14 -2.38 -0.02 0.30 16 Total: -1.00 -70.66 323.61 5.46 -65.20 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: 1.07 Total: 4.37 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 3.34 Total: -19.92 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.28 Total: -56.89 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -1.25 Total: -38.95 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -70.66 5.46 -65.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914641257.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.764 kcal (2) G-P(sol) polarization free energy of solvation -70.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds