Wall clock time and date at job start Mon Mar 30 2020 02:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46757 * 2 1 4 4 O 1.42902 * 109.46852 * 240.00214 * 2 1 3 5 5 C 1.35901 * 116.99958 * 84.80035 * 4 2 1 6 6 C 1.38750 * 120.09308 * 174.64287 * 5 4 2 7 7 C 1.37994 * 119.88141 * 179.97438 * 6 5 4 8 8 C 1.38550 * 120.28889 * 359.97438 * 7 6 5 9 9 C 1.38260 * 119.93728 * 0.02562 * 8 7 6 10 10 C 1.38408 * 119.90654 * 359.97438 * 9 8 7 11 11 C 1.51382 * 109.75729 * 180.02562 * 9 8 7 12 12 C 1.54351 * 105.16897 * 342.79991 * 11 9 8 13 13 C 1.51699 * 130.24327 * 179.80514 * 8 7 6 14 14 C 1.50690 * 109.47022 * 120.00062 * 2 1 3 15 15 O 1.21214 * 120.00164 * 119.99791 * 14 2 1 16 16 O 1.34316 * 120.00565 * 299.99844 * 14 2 1 17 17 C 1.34915 * 117.00615 * 179.97438 * 16 14 2 18 18 H 1.08001 * 119.99662 * 0.02562 * 17 16 14 19 19 C 1.38756 * 120.00623 * 180.02562 * 17 16 14 20 20 N 1.31444 * 119.99353 * 359.97438 * 19 17 16 21 21 Si 1.86790 * 120.00477 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47405 * 59.99515 * 21 19 17 23 23 H 1.48499 * 109.47388 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46949 * 299.99809 * 21 19 17 25 25 H 1.09000 * 109.46849 * 299.99669 * 1 2 3 26 26 H 1.08998 * 109.47377 * 59.99993 * 1 2 3 27 27 H 1.09003 * 109.47049 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.05507 * 359.96275 * 6 5 4 29 29 H 1.07999 * 119.85881 * 179.97438 * 7 6 5 30 30 H 1.07997 * 119.91238 * 179.97438 * 10 9 8 31 31 H 1.08996 * 110.30047 * 223.87738 * 11 9 8 32 32 H 1.08998 * 110.30272 * 101.71645 * 11 9 8 33 33 H 1.08994 * 110.81855 * 144.59065 * 12 11 9 34 34 H 1.09001 * 110.81921 * 267.94281 * 12 11 9 35 35 H 1.09003 * 110.25493 * 78.29124 * 13 8 7 36 36 H 1.08998 * 110.49445 * 316.04847 * 13 8 7 37 37 H 0.97003 * 119.99487 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1085 0.0616 -2.3052 6 6 2.6673 -0.4964 -3.4460 7 6 2.7684 0.2540 -4.5997 8 6 2.3138 1.5625 -4.6243 9 6 1.7565 2.1208 -3.4888 10 6 1.6538 1.3707 -2.3301 11 6 1.3409 3.5487 -3.7717 12 6 2.0970 3.9420 -5.0585 13 6 2.3159 2.5798 -5.7496 14 6 2.0323 -0.7104 1.2304 15 8 2.7292 -1.6959 1.1192 16 8 1.7079 -0.2516 2.4504 17 6 2.1898 -0.9341 3.5097 18 1 2.8069 -1.8068 3.3544 19 6 1.8928 -0.5150 4.7986 20 7 1.1422 0.5474 4.9875 21 14 2.5606 -1.4595 6.2652 22 1 4.0449 -1.4582 6.2207 23 1 2.1030 -0.8123 7.5209 24 1 2.0653 -2.8588 6.2199 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.0227 -1.5161 -3.4310 29 1 3.2039 -0.1806 -5.4873 30 1 1.2189 1.8068 -1.4430 31 1 1.6342 4.1984 -2.9471 32 1 0.2644 3.6042 -3.9337 33 1 1.4885 4.5988 -5.6800 34 1 3.0509 4.4120 -4.8191 35 1 1.5024 2.3745 -6.4455 36 1 3.2727 2.5694 -6.2716 37 1 0.9342 0.8402 5.8886 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915478711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:12 Heat of formation + Delta-G solvation = -115.632646 kcal Electronic energy + Delta-G solvation = -20721.546136 eV Core-core repulsion = 17428.506403 eV Total energy + Delta-G solvation = -3293.039733 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.84528 -40.99496 -39.60448 -37.29617 -35.90270 -34.42399 -33.02653 -32.20198 -29.39446 -28.04615 -27.76941 -25.73770 -23.93173 -22.21798 -21.80188 -21.45611 -19.98039 -19.01768 -18.50556 -17.48126 -17.00743 -16.52114 -16.43032 -16.20659 -16.09883 -15.92683 -14.95592 -14.87788 -14.45953 -14.02307 -13.81905 -13.66868 -13.64444 -13.27766 -13.20684 -12.85633 -12.71583 -12.49471 -12.37356 -12.22106 -12.18337 -12.09667 -11.99245 -11.61373 -11.40371 -11.03860 -10.75123 -9.81454 -9.00117 -8.60055 -6.41134 0.33078 0.39251 1.19624 1.28445 1.44254 1.53801 1.61313 2.21508 2.71546 2.80165 2.90581 3.43681 3.59917 3.66996 3.79874 3.98376 4.20087 4.21898 4.25247 4.33901 4.39705 4.50877 4.64205 4.68679 4.77331 4.90384 4.96977 5.00406 5.03278 5.09072 5.11379 5.22453 5.33493 5.35132 5.44527 5.66389 5.74552 5.82317 6.33062 6.51573 6.83859 7.61034 8.59575 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.035151 B = 0.003577 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.375925 B = 7825.808407 C = 8272.554158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 H 0.115 0.885 4 O -0.313 6.313 5 C 0.105 3.895 6 C -0.166 4.166 7 C -0.067 4.067 8 C -0.144 4.144 9 C -0.069 4.069 10 C -0.209 4.209 11 C -0.086 4.086 12 C -0.116 4.116 13 C -0.073 4.073 14 C 0.395 3.605 15 O -0.572 6.572 16 O -0.226 6.226 17 C -0.429 4.429 18 H 0.081 0.919 19 C 0.003 3.997 20 N -0.895 5.895 21 Si 1.019 2.981 22 H -0.262 1.262 23 H -0.256 1.256 24 H -0.262 1.262 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.131 0.869 29 H 0.155 0.845 30 H 0.133 0.867 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.140 7.958 -19.598 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.058 3.942 3 H 0.133 0.867 4 O -0.227 6.227 5 C 0.061 3.939 6 C -0.184 4.184 7 C -0.085 4.085 8 C -0.144 4.144 9 C -0.069 4.069 10 C -0.227 4.227 11 C -0.123 4.123 12 C -0.153 4.153 13 C -0.110 4.110 14 C 0.242 3.758 15 O -0.469 6.469 16 O -0.134 6.134 17 C -0.504 4.504 18 H 0.098 0.902 19 C -0.199 4.199 20 N -0.532 5.532 21 Si 0.837 3.163 22 H -0.187 1.187 23 H -0.179 1.179 24 H -0.186 1.186 25 H 0.105 0.895 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.149 0.851 29 H 0.172 0.828 30 H 0.151 0.849 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.026 7.656 -19.408 20.889 hybrid contribution 0.311 -0.721 1.131 1.377 sum -0.715 6.936 -18.277 19.562 Atomic orbital electron populations 1.22222 0.90246 1.04021 1.05094 1.21456 0.96989 0.95663 0.80079 0.86737 1.86126 1.81863 1.38302 1.16408 1.19245 0.97275 0.91143 0.86273 1.20554 1.04578 1.01846 0.91471 1.20680 0.97805 0.92840 0.97134 1.21046 1.01078 0.95144 0.97125 1.20752 0.96347 0.97425 0.92401 1.20893 1.07786 0.93624 1.00435 1.21208 1.01580 0.90179 0.99335 1.22323 1.00990 0.96710 0.95301 1.21105 1.03454 0.91485 0.94945 1.23728 0.80932 0.84710 0.86447 1.90544 1.39808 1.28797 1.87733 1.83853 1.64335 1.52206 1.13030 1.21431 1.33943 1.12036 0.82973 0.90169 1.26532 0.95800 0.97324 1.00200 1.70049 1.34851 1.23813 1.24438 0.84682 0.78838 0.77911 0.74902 1.18678 1.17909 1.18623 0.89514 0.88112 0.91904 0.85064 0.82774 0.84918 0.90298 0.88815 0.88314 0.90824 0.89100 0.89567 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.39 9.10 71.98 0.66 -4.73 16 2 C 0.12 4.71 2.75 29.85 0.08 4.79 16 3 H 0.12 4.20 6.32 -2.39 -0.02 4.18 16 4 O -0.31 -12.79 9.33 -73.39 -0.69 -13.47 16 5 C 0.11 3.51 6.60 22.48 0.15 3.66 16 6 C -0.17 -4.79 9.99 22.33 0.22 -4.57 16 7 C -0.07 -1.50 10.03 22.29 0.22 -1.27 16 8 C -0.14 -3.03 6.15 -19.47 -0.12 -3.15 16 9 C -0.07 -1.62 6.13 -19.60 -0.12 -1.74 16 10 C -0.21 -5.98 8.24 22.40 0.18 -5.79 16 11 C -0.09 -1.41 6.77 30.52 0.21 -1.20 16 12 C -0.12 -1.39 7.07 31.50 0.22 -1.16 16 13 C -0.07 -0.98 6.79 30.61 0.21 -0.77 16 14 C 0.40 21.30 7.28 71.23 0.52 21.81 16 15 O -0.57 -34.45 15.74 27.20 0.43 -34.03 16 16 O -0.23 -13.51 9.65 14.88 0.14 -13.37 16 17 C -0.43 -26.44 9.65 67.94 0.66 -25.78 16 18 H 0.08 5.06 6.86 -2.91 -0.02 5.04 16 19 C 0.00 0.16 5.49 84.87 0.47 0.62 16 20 N -0.90 -52.11 13.67 21.63 0.30 -51.82 16 21 Si 1.02 43.40 29.55 68.60 2.03 45.43 16 22 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 23 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 25 H 0.09 3.02 8.11 -2.39 -0.02 3.00 16 26 H 0.10 2.71 6.90 -2.39 -0.02 2.69 16 27 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 29 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 30 H 0.13 3.60 5.41 -2.91 -0.02 3.59 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.28 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -75.95 316.31 6.84 -69.10 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 1.08 Total: 17.44 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 3.55 Total: -19.29 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.30 Total: -51.82 kcal Atomic # 8 Polarization: -60.75 SS G_CDS: -0.11 Total: -60.87 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -75.95 6.84 -69.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915478711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.530 kcal (2) G-P(sol) polarization free energy of solvation -75.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds