Wall clock time and date at job start Mon Mar 30 2020 02:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21224 * 119.99525 * 2 1 4 4 C 1.47404 * 120.00278 * 179.97438 * 2 1 3 5 5 C 1.39810 * 120.02243 * 180.02562 * 4 2 1 6 6 C 1.37769 * 119.97649 * 180.27596 * 5 4 2 7 7 C 1.39619 * 120.01894 * 359.48983 * 6 5 4 8 8 C 1.47962 * 119.97313 * 180.23333 * 7 6 5 9 9 O 1.21434 * 119.99895 * 180.27654 * 8 7 6 10 10 O 1.34684 * 120.00174 * 0.27147 * 8 7 6 11 11 C 1.45200 * 117.00206 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47132 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.46942 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.47126 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99637 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00083 * 180.02562 * 14 13 12 17 17 N 1.31524 * 120.00098 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00127 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47094 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47354 * 120.00194 * 18 16 14 21 21 H 1.48505 * 109.47020 * 239.99780 * 18 16 14 22 22 C 1.39607 * 120.04744 * 0.50679 * 7 6 5 23 23 C 1.37763 * 120.02486 * 359.75282 * 22 7 6 24 24 H 1.08997 * 109.47001 * 270.00174 * 1 2 3 25 25 H 1.08990 * 109.47370 * 30.00564 * 1 2 3 26 26 H 1.08998 * 109.46871 * 150.00546 * 1 2 3 27 27 H 1.08002 * 120.00864 * 359.97438 * 5 4 2 28 28 H 1.07998 * 119.99123 * 179.72133 * 6 5 4 29 29 H 1.09000 * 109.47448 * 300.00038 * 11 10 8 30 30 H 1.09004 * 109.46927 * 60.00181 * 11 10 8 31 31 H 1.08999 * 109.47316 * 299.99952 * 12 11 10 32 32 H 1.09004 * 109.47178 * 60.00199 * 12 11 10 33 33 H 1.08999 * 109.47074 * 300.00098 * 13 12 11 34 34 H 1.09004 * 109.47024 * 60.00103 * 13 12 11 35 35 H 0.97000 * 119.99645 * 180.02562 * 17 16 14 36 36 H 1.08003 * 119.98491 * 179.72541 * 22 7 6 37 37 H 1.07996 * 120.01681 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0499 0.0000 4 6 2.2441 -1.2765 0.0006 5 6 3.6422 -1.2770 0.0011 6 6 4.3302 -2.4706 -0.0041 7 6 3.6316 -3.6795 0.0008 8 6 4.3715 -4.9608 0.0005 9 8 3.7644 -6.0125 -0.0003 10 8 5.7183 -4.9608 0.0009 11 6 6.3776 -6.2544 0.0010 12 6 7.8945 -6.0539 0.0021 13 6 8.5891 -7.4171 0.0017 14 6 10.0832 -7.2196 0.0021 15 1 10.4959 -6.2216 0.0023 16 6 10.9231 -8.3129 0.0013 17 7 10.4205 -9.5283 -0.0005 18 14 12.7750 -8.0681 0.0026 19 1 13.0822 -6.6153 0.0038 20 1 13.3568 -8.6986 1.2145 21 1 13.3581 -8.6958 -1.2104 22 6 2.2355 -3.6801 0.0004 23 6 1.5457 -2.4876 0.0002 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8898 -0.5139 26 1 -0.3633 -0.8900 -0.5137 27 1 4.1827 -0.3419 0.0007 28 1 5.4101 -2.4713 -0.0082 29 1 6.0845 -6.8116 0.8909 30 1 6.0850 -6.8114 -0.8891 31 1 8.1879 -5.4966 -0.8875 32 1 8.1867 -5.4971 0.8925 33 1 8.2957 -7.9747 0.8911 34 1 8.2968 -7.9735 -0.8889 35 1 11.0115 -10.2975 -0.0007 36 1 1.6962 -4.6158 -0.0003 37 1 0.4657 -2.4882 -0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915563277.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:54 Heat of formation + Delta-G solvation = -115.298235 kcal Electronic energy + Delta-G solvation = -19522.530427 eV Core-core repulsion = 16229.505195 eV Total energy + Delta-G solvation = -3293.025232 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.75467 -39.99167 -38.35292 -36.49391 -34.04575 -32.73305 -31.69668 -31.47968 -29.97739 -27.24208 -25.30892 -23.41970 -22.78417 -21.43517 -20.41455 -20.16054 -18.17514 -17.29391 -16.71615 -16.37775 -16.19190 -15.79781 -15.45746 -15.06779 -14.52295 -14.42982 -14.19067 -14.01305 -13.70186 -13.06861 -12.81683 -12.67163 -12.55937 -12.21893 -12.14286 -11.93233 -11.49811 -11.01050 -10.74107 -10.68592 -10.50171 -10.45899 -10.23633 -9.77655 -9.55251 -9.48089 -9.46677 -9.17699 -8.41239 -6.05805 -4.08881 -0.13619 0.92391 1.65434 2.55238 2.68823 3.28797 3.36364 3.40622 3.43863 3.52472 4.26489 4.40972 4.47159 4.55393 4.61600 4.84048 4.85995 4.92063 5.02002 5.29398 5.30327 5.43102 5.52307 5.54330 5.57482 5.72240 5.87501 5.91249 5.97679 6.32245 6.39338 6.49486 6.75795 6.93788 7.01901 7.57519 7.67919 7.76966 7.92479 8.33186 8.97580 9.55664 11.05646 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.040131 B = 0.002528 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.542894 B =11071.541805 C =11738.033393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.394 3.606 3 O -0.452 6.452 4 C -0.147 4.147 5 C -0.075 4.075 6 C -0.073 4.073 7 C -0.087 4.087 8 C 0.499 3.501 9 O -0.503 6.503 10 O -0.351 6.351 11 C 0.069 3.931 12 C -0.109 4.109 13 C 0.023 3.977 14 C -0.521 4.521 15 H 0.058 0.942 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.072 4.072 23 C -0.087 4.087 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.142 0.858 28 H 0.149 0.851 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.261 0.739 36 H 0.145 0.855 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.034 16.543 0.051 26.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.272 3.728 3 O -0.328 6.328 4 C -0.148 4.148 5 C -0.093 4.093 6 C -0.091 4.091 7 C -0.088 4.088 8 C 0.343 3.657 9 O -0.393 6.393 10 O -0.267 6.267 11 C -0.004 4.004 12 C -0.147 4.147 13 C -0.014 4.014 14 C -0.559 4.559 15 H 0.076 0.924 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.090 4.090 23 C -0.105 4.105 24 H 0.118 0.882 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.160 0.840 28 H 0.167 0.833 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.163 0.837 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.796 16.572 0.047 26.591 hybrid contribution 0.991 -0.371 0.008 1.058 sum -19.805 16.201 0.055 25.587 Atomic orbital electron populations 1.22253 0.93364 1.05189 1.05031 1.22625 0.91844 0.87432 0.70930 1.90553 1.72159 1.34226 1.35815 1.20790 0.94794 0.95036 1.04134 1.21453 0.93057 0.98917 0.95867 1.21591 1.01620 0.90693 0.95243 1.19534 0.93594 0.91457 1.04203 1.21149 0.82042 0.89071 0.73426 1.90827 1.69698 1.33367 1.45366 1.86533 1.19210 1.38023 1.82975 1.23587 0.94177 0.80256 1.02381 1.21782 0.88511 1.02321 1.02062 1.19063 0.94938 0.89632 0.97730 1.21200 0.91020 0.92777 1.50910 0.92356 1.25038 0.99094 0.95214 0.95192 1.69979 1.35033 0.97729 1.50601 0.86483 0.85305 0.78296 0.77613 1.19667 1.20962 1.20967 1.21282 0.92323 0.99336 0.96027 1.21405 1.00478 0.90766 0.97825 0.88179 0.89196 0.89277 0.83999 0.83308 0.91276 0.91270 0.92055 0.92050 0.96190 0.96190 0.92929 0.83691 0.83976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.80 9.75 36.01 0.35 -0.45 16 2 C 0.39 3.11 7.23 -30.58 -0.22 2.89 16 3 O -0.45 -5.16 17.08 5.61 0.10 -5.06 16 4 C -0.15 -1.21 5.87 -104.99 -0.62 -1.83 16 5 C -0.07 -0.70 9.58 -39.17 -0.38 -1.07 16 6 C -0.07 -0.76 9.60 -39.24 -0.38 -1.13 16 7 C -0.09 -1.01 5.88 -104.89 -0.62 -1.63 16 8 C 0.50 7.53 7.90 34.72 0.27 7.81 16 9 O -0.50 -8.73 16.12 -19.21 -0.31 -9.04 16 10 O -0.35 -5.70 9.46 -40.45 -0.38 -6.08 16 11 C 0.07 1.24 5.47 37.16 0.20 1.44 16 12 C -0.11 -2.22 5.53 -26.73 -0.15 -2.37 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 14 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 18 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C -0.07 -0.67 9.58 -39.24 -0.38 -1.04 16 23 C -0.09 -0.60 9.35 -39.17 -0.37 -0.97 16 24 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 0.18 6.46 -51.93 -0.34 -0.15 16 27 H 0.14 1.23 7.64 -52.49 -0.40 0.83 16 28 H 0.15 1.46 7.60 -52.49 -0.40 1.06 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.15 1.26 7.64 -52.48 -0.40 0.86 16 37 H 0.14 0.49 6.34 -52.49 -0.33 0.16 16 LS Contribution 328.94 15.07 4.96 4.96 Total: -1.00 -32.95 328.94 -7.53 -40.48 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -4.79 Total: -4.49 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -2.82 Total: -11.26 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: 0.74 Total: -25.95 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.60 Total: -20.19 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.95 -7.53 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915563277.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.814 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds