Wall clock time and date at job start Mon Mar 30 2020 01:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30616 * 1 3 3 Si 1.86800 * 119.99789 * 2 1 4 4 H 1.48496 * 109.47086 * 239.99698 * 3 2 1 5 5 H 1.48500 * 109.47387 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47341 * 119.99895 * 3 2 1 7 7 C 1.40294 * 120.00370 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99976 * 170.75795 * 7 2 1 9 9 C 1.40868 * 119.99739 * 350.76475 * 7 2 1 10 10 C 1.40695 * 120.33141 * 325.82556 * 9 7 2 11 11 C 1.37597 * 119.88980 * 180.02562 * 10 9 7 12 12 C 1.38840 * 120.58227 * 359.97438 * 11 10 9 13 13 C 1.38207 * 120.68149 * 0.02562 * 12 11 10 14 14 C 1.39294 * 120.08306 * 359.97438 * 13 12 11 15 15 C 1.47296 * 120.28560 * 180.02562 * 14 13 12 16 16 O 1.21524 * 119.99668 * 174.20869 * 15 14 13 17 17 O 1.34805 * 119.99846 * 354.20733 * 15 14 13 18 18 C 1.45195 * 116.99480 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.46946 * 179.97438 * 18 17 15 20 20 H 1.09002 * 109.86534 * 54.29524 * 19 18 17 21 21 C 1.54096 * 109.87991 * 175.30507 * 19 18 17 22 22 C 1.54813 * 104.18831 * 121.45593 * 21 19 18 23 23 C 1.54989 * 102.09179 * 20.88012 * 22 21 19 24 24 O 1.43738 * 109.87877 * 293.29207 * 19 18 17 25 25 H 0.96993 * 120.00076 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.05822 * 0.04633 * 10 9 7 27 27 H 1.07998 * 119.71805 * 180.27620 * 11 10 9 28 28 H 1.07997 * 119.66405 * 180.02562 * 12 11 10 29 29 H 1.07995 * 119.95913 * 180.02562 * 13 12 11 30 30 H 1.09000 * 109.47390 * 299.99637 * 18 17 15 31 31 H 1.08999 * 109.47685 * 60.00078 * 18 17 15 32 32 H 1.09003 * 110.49039 * 240.13119 * 21 19 18 33 33 H 1.08999 * 110.48464 * 2.77843 * 21 19 18 34 34 H 1.08999 * 110.90755 * 139.08097 * 22 21 19 35 35 H 1.08998 * 110.90517 * 262.68208 * 22 21 19 36 36 H 1.08994 * 110.62146 * 81.47627 * 23 22 21 37 37 H 1.09001 * 110.62058 * 204.47759 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2401 1.6178 0.0000 4 1 3.0939 1.6964 -1.2124 5 1 1.2751 2.7465 -0.0006 6 1 3.0939 1.6965 1.2125 7 6 2.0077 -1.2149 0.0005 8 1 3.0772 -1.2210 -0.1497 9 6 1.3171 -2.4269 0.1969 10 6 0.1991 -2.4775 1.0496 11 6 -0.4684 -3.6663 1.2352 12 6 -0.0492 -4.8205 0.5872 13 6 1.0459 -4.7979 -0.2556 14 6 1.7423 -3.6097 -0.4638 15 6 2.9097 -3.5804 -1.3615 16 8 3.4493 -2.5232 -1.6223 17 8 3.3796 -4.7263 -1.8938 18 6 4.5333 -4.6220 -2.7691 19 6 4.9193 -6.0145 -3.2723 20 1 4.0565 -6.4932 -3.7356 21 6 6.0679 -5.9030 -4.2934 22 6 7.2032 -6.7601 -3.6827 23 6 6.4267 -7.6784 -2.7050 24 8 5.3933 -6.8159 -2.1772 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1348 -1.5847 1.5573 27 1 -1.3290 -3.7011 1.8868 28 1 -0.5844 -5.7455 0.7433 29 1 1.3616 -5.7025 -0.7541 30 1 4.2888 -3.9835 -3.6180 31 1 5.3693 -4.1905 -2.2187 32 1 5.7614 -6.3074 -5.2581 33 1 6.3865 -4.8658 -4.3973 34 1 7.7046 -7.3469 -4.4523 35 1 7.9165 -6.1350 -3.1456 36 1 5.9855 -8.5206 -3.2379 37 1 7.0803 -8.0283 -1.9059 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916607591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:16 Heat of formation + Delta-G solvation = -118.683532 kcal Electronic energy + Delta-G solvation = -20951.753140 eV Core-core repulsion = 17658.581110 eV Total energy + Delta-G solvation = -3293.172029 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.72466 -38.96616 -37.17980 -35.22094 -33.71705 -32.29681 -30.90135 -29.97709 -29.50083 -25.93679 -25.21189 -22.69877 -21.97677 -21.03811 -20.95608 -19.55841 -17.45613 -16.84033 -16.32776 -16.20291 -15.78920 -15.35549 -14.97615 -14.66697 -14.20858 -13.76173 -13.45741 -13.18121 -12.70592 -12.47114 -12.42782 -11.93144 -11.64995 -11.59353 -11.52213 -11.31389 -11.14166 -11.02002 -10.84509 -10.67958 -10.59283 -10.16684 -9.85512 -9.72306 -9.64818 -9.31042 -8.75896 -7.61870 -7.40491 -6.85925 -4.46577 2.24632 2.83132 3.06183 3.11860 3.23715 3.53047 3.82052 3.92679 3.95459 4.38829 4.62534 4.66560 4.77026 5.01605 5.12522 5.33578 5.43036 5.51144 5.58044 5.59201 5.67169 5.75620 5.86434 5.96220 6.16656 6.21693 6.39425 6.61589 6.87338 6.96539 7.08196 7.16648 7.36500 7.50062 7.65620 7.92443 7.96516 8.16442 8.58814 8.73378 8.81358 9.13663 10.08853 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019948 B = 0.004846 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.295581 B = 5776.494783 C = 6957.170026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.418 4.418 8 H 0.104 0.896 9 C 0.148 3.852 10 C -0.150 4.150 11 C -0.090 4.090 12 C -0.248 4.248 13 C -0.036 4.036 14 C -0.249 4.249 15 C 0.505 3.495 16 O -0.518 6.518 17 O -0.362 6.362 18 C 0.071 3.929 19 C 0.079 3.921 20 H 0.078 0.922 21 C -0.150 4.150 22 C -0.155 4.155 23 C 0.042 3.958 24 O -0.361 6.361 25 H 0.284 0.716 26 H 0.120 0.880 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.555 -8.783 -5.947 13.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.149 4.149 3 Si 0.743 3.257 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.446 4.446 8 H 0.122 0.878 9 C 0.145 3.855 10 C -0.169 4.169 11 C -0.109 4.109 12 C -0.267 4.267 13 C -0.054 4.054 14 C -0.252 4.252 15 C 0.356 3.644 16 O -0.409 6.409 17 O -0.281 6.281 18 C -0.004 4.004 19 C 0.021 3.979 20 H 0.096 0.904 21 C -0.187 4.187 22 C -0.193 4.193 23 C -0.035 4.035 24 O -0.280 6.280 25 H 0.095 0.905 26 H 0.137 0.863 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.452 -8.294 -5.839 13.203 hybrid contribution 0.386 0.771 -0.428 0.963 sum 8.838 -7.523 -6.268 13.191 Atomic orbital electron populations 1.69697 1.07790 1.29906 1.33857 1.26134 0.94829 1.01828 0.92063 0.86182 0.79997 0.79200 0.80366 1.18587 1.20309 1.18638 1.20168 0.97306 0.89606 1.37532 0.87817 1.17447 0.90121 0.90925 0.87054 1.21297 0.98443 0.96509 1.00627 1.20858 0.98027 0.93518 0.98462 1.20363 1.01968 0.97477 1.06902 1.20853 0.93738 0.95727 0.95127 1.18781 1.01109 0.96806 1.08518 1.21400 0.83724 0.80543 0.78743 1.90723 1.59127 1.30929 1.60115 1.86627 1.44675 1.37237 1.59517 1.22967 0.88267 0.95265 0.93877 1.22791 0.96568 0.91276 0.87250 0.90416 1.22931 0.94938 1.02019 0.98857 1.23133 0.98193 0.98600 0.99338 1.23599 0.89461 0.93292 0.97124 1.89086 1.54311 1.52842 1.31767 0.90459 0.86256 0.88856 0.88803 0.87887 0.90705 0.91286 0.90069 0.89930 0.90180 0.90353 0.92207 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.27 11.14 55.57 0.62 -19.65 16 2 C 0.07 1.80 5.25 -17.30 -0.09 1.71 16 3 Si 0.92 19.43 29.57 -169.99 -5.03 14.40 16 4 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.42 -11.55 7.68 -37.81 -0.29 -11.84 16 8 H 0.10 2.94 5.92 -52.49 -0.31 2.63 16 9 C 0.15 4.06 5.51 -106.54 -0.59 3.47 16 10 C -0.15 -3.84 8.62 -38.89 -0.34 -4.17 16 11 C -0.09 -2.06 10.01 -39.59 -0.40 -2.45 16 12 C -0.25 -5.51 10.03 -39.37 -0.39 -5.90 16 13 C -0.04 -0.84 9.60 -39.20 -0.38 -1.22 16 14 C -0.25 -6.48 5.92 -104.38 -0.62 -7.10 16 15 C 0.51 12.65 7.84 34.41 0.27 12.92 16 16 O -0.52 -13.85 13.39 -19.28 -0.26 -14.11 16 17 O -0.36 -7.82 9.48 -42.74 -0.41 -8.23 16 18 C 0.07 1.22 4.93 37.16 0.18 1.40 16 19 C 0.08 1.09 3.71 -26.16 -0.10 0.99 16 20 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 21 C -0.15 -1.47 6.64 -25.20 -0.17 -1.64 16 22 C -0.15 -1.34 7.16 -24.73 -0.18 -1.52 16 23 C 0.04 0.43 7.72 38.21 0.29 0.73 16 24 O -0.36 -5.50 11.20 -36.27 -0.41 -5.91 16 25 H 0.28 6.63 8.29 -40.82 -0.34 6.29 16 26 H 0.12 3.08 6.59 -52.49 -0.35 2.73 16 27 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 28 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.10 2.19 7.61 -52.49 -0.40 1.80 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.79 7.70 -51.93 -0.40 0.39 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 314.08 15.07 4.73 4.73 Total: -1.00 -30.56 314.08 -8.34 -38.90 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -4.82 Total: 4.48 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -2.78 Total: -14.62 kcal Atomic # 7 Polarization: -20.27 SS G_CDS: 0.62 Total: -19.65 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -1.07 Total: -28.24 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.56 -8.34 -38.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916607591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.782 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds