Wall clock time and date at job start Mon Mar 30 2020 01:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30616 * 1 3 3 Si 1.86800 * 119.99789 * 2 1 4 4 H 1.48496 * 109.47086 * 239.99698 * 3 2 1 5 5 H 1.48500 * 109.47387 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47341 * 119.99895 * 3 2 1 7 7 C 1.40294 * 120.00370 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99976 * 170.75795 * 7 2 1 9 9 C 1.40868 * 119.99739 * 350.76475 * 7 2 1 10 10 C 1.40695 * 120.33141 * 325.82556 * 9 7 2 11 11 C 1.37597 * 119.88980 * 180.02562 * 10 9 7 12 12 C 1.38840 * 120.58227 * 359.97438 * 11 10 9 13 13 C 1.38207 * 120.68149 * 0.02562 * 12 11 10 14 14 C 1.39294 * 120.08306 * 359.97438 * 13 12 11 15 15 C 1.47296 * 120.28560 * 180.02562 * 14 13 12 16 16 O 1.21524 * 119.99668 * 174.20869 * 15 14 13 17 17 O 1.34805 * 119.99846 * 354.20733 * 15 14 13 18 18 C 1.45195 * 116.99480 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.46946 * 179.97438 * 18 17 15 20 20 H 1.09002 * 109.86534 * 54.29524 * 19 18 17 21 21 C 1.54096 * 109.87991 * 175.30507 * 19 18 17 22 22 C 1.54813 * 104.18831 * 121.45593 * 21 19 18 23 23 C 1.54989 * 102.09179 * 20.88012 * 22 21 19 24 24 O 1.43738 * 109.87877 * 293.29207 * 19 18 17 25 25 H 0.96993 * 120.00076 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.05822 * 0.04633 * 10 9 7 27 27 H 1.07998 * 119.71805 * 180.27620 * 11 10 9 28 28 H 1.07997 * 119.66405 * 180.02562 * 12 11 10 29 29 H 1.07995 * 119.95913 * 180.02562 * 13 12 11 30 30 H 1.09000 * 109.47390 * 299.99637 * 18 17 15 31 31 H 1.08999 * 109.47685 * 60.00078 * 18 17 15 32 32 H 1.09003 * 110.49039 * 240.13119 * 21 19 18 33 33 H 1.08999 * 110.48464 * 2.77843 * 21 19 18 34 34 H 1.08999 * 110.90755 * 139.08097 * 22 21 19 35 35 H 1.08998 * 110.90517 * 262.68208 * 22 21 19 36 36 H 1.08994 * 110.62146 * 81.47627 * 23 22 21 37 37 H 1.09001 * 110.62058 * 204.47759 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2401 1.6178 0.0000 4 1 3.0939 1.6964 -1.2124 5 1 1.2751 2.7465 -0.0006 6 1 3.0939 1.6965 1.2125 7 6 2.0077 -1.2149 0.0005 8 1 3.0772 -1.2210 -0.1497 9 6 1.3171 -2.4269 0.1969 10 6 0.1991 -2.4775 1.0496 11 6 -0.4684 -3.6663 1.2352 12 6 -0.0492 -4.8205 0.5872 13 6 1.0459 -4.7979 -0.2556 14 6 1.7423 -3.6097 -0.4638 15 6 2.9097 -3.5804 -1.3615 16 8 3.4493 -2.5232 -1.6223 17 8 3.3796 -4.7263 -1.8938 18 6 4.5333 -4.6220 -2.7691 19 6 4.9193 -6.0145 -3.2723 20 1 4.0565 -6.4932 -3.7356 21 6 6.0679 -5.9030 -4.2934 22 6 7.2032 -6.7601 -3.6827 23 6 6.4267 -7.6784 -2.7050 24 8 5.3933 -6.8159 -2.1772 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1348 -1.5847 1.5573 27 1 -1.3290 -3.7011 1.8868 28 1 -0.5844 -5.7455 0.7433 29 1 1.3616 -5.7025 -0.7541 30 1 4.2888 -3.9835 -3.6180 31 1 5.3693 -4.1905 -2.2187 32 1 5.7614 -6.3074 -5.2581 33 1 6.3865 -4.8658 -4.3973 34 1 7.7046 -7.3469 -4.4523 35 1 7.9165 -6.1350 -3.1456 36 1 5.9855 -8.5206 -3.2379 37 1 7.0803 -8.0283 -1.9059 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916607591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:15 Heat of formation + Delta-G solvation = -135.832051 kcal Electronic energy + Delta-G solvation = -20952.496755 eV Core-core repulsion = 17658.581110 eV Total energy + Delta-G solvation = -3293.915645 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.26771 -40.27974 -39.01325 -37.05952 -35.62623 -33.24447 -32.25636 -31.76280 -31.23142 -27.61970 -26.64241 -24.36330 -23.07880 -22.78697 -22.04942 -21.35747 -19.39204 -18.44524 -17.79957 -17.58209 -17.12968 -16.92950 -16.43194 -16.05406 -15.95570 -15.24077 -14.86341 -14.54927 -14.46453 -14.12119 -13.97651 -13.46322 -13.14604 -12.90695 -12.87914 -12.65444 -12.63387 -12.43267 -12.33078 -12.15740 -11.99184 -11.66616 -11.55276 -11.48267 -11.19501 -10.72480 -10.67949 -9.52836 -9.33743 -8.75317 -6.47376 0.31959 0.98572 1.33320 1.45114 1.50330 1.93079 2.02239 2.18201 2.70482 2.86429 3.54375 3.62024 3.70946 3.90388 4.07580 4.11014 4.26476 4.40079 4.40835 4.43207 4.54293 4.61557 4.78938 4.84544 4.87940 4.93117 5.03839 5.07594 5.17253 5.17464 5.25869 5.49790 5.61360 5.79290 5.94126 5.98868 6.04934 6.27018 6.60276 6.75862 6.85939 7.22958 8.21885 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019948 B = 0.004846 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.295581 B = 5776.494783 C = 6957.170026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.272 1.272 5 H -0.255 1.255 6 H -0.256 1.256 7 C -0.457 4.457 8 H 0.083 0.917 9 C 0.120 3.880 10 C -0.174 4.174 11 C -0.082 4.082 12 C -0.238 4.238 13 C -0.040 4.040 14 C -0.278 4.278 15 C 0.504 3.496 16 O -0.546 6.546 17 O -0.363 6.363 18 C 0.063 3.937 19 C 0.081 3.919 20 H 0.082 0.918 21 C -0.144 4.144 22 C -0.148 4.148 23 C 0.033 3.967 24 O -0.401 6.401 25 H 0.294 0.706 26 H 0.109 0.891 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.123 0.877 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.665 -10.149 -6.623 14.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.182 4.182 3 Si 0.803 3.197 4 H -0.197 1.197 5 H -0.179 1.179 6 H -0.180 1.180 7 C -0.485 4.485 8 H 0.101 0.899 9 C 0.117 3.883 10 C -0.193 4.193 11 C -0.101 4.101 12 C -0.256 4.256 13 C -0.058 4.058 14 C -0.280 4.280 15 C 0.355 3.645 16 O -0.439 6.439 17 O -0.281 6.281 18 C -0.011 4.011 19 C 0.023 3.977 20 H 0.100 0.900 21 C -0.182 4.182 22 C -0.185 4.185 23 C -0.043 4.043 24 O -0.321 6.321 25 H 0.105 0.895 26 H 0.127 0.873 27 H 0.147 0.853 28 H 0.152 0.848 29 H 0.141 0.859 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.125 0.875 33 H 0.101 0.899 34 H 0.129 0.871 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.554 -9.699 -6.515 14.481 hybrid contribution 0.347 0.990 -0.233 1.074 sum 8.902 -8.709 -6.747 14.164 Atomic orbital electron populations 1.69707 1.08703 1.31260 1.34052 1.26851 0.95683 1.04423 0.91226 0.85246 0.78929 0.75610 0.79885 1.19651 1.17889 1.18014 1.20174 0.96633 0.91241 1.40420 0.89945 1.17818 0.91171 0.91547 0.87764 1.21299 0.99126 0.97510 1.01375 1.21259 0.98209 0.92595 0.97997 1.20834 1.01055 0.98738 1.05005 1.21130 0.93838 0.95478 0.95379 1.19148 1.02133 0.97646 1.09122 1.21415 0.83546 0.80921 0.78597 1.90692 1.59996 1.32096 1.61123 1.86588 1.46083 1.35466 1.59929 1.23389 0.86282 0.98363 0.93092 1.22866 0.98344 0.88832 0.87640 0.89976 1.22969 0.93768 1.02687 0.98778 1.23142 0.97564 0.98252 0.99577 1.23890 0.88883 0.93409 0.98079 1.89037 1.55880 1.53867 1.33274 0.89472 0.87286 0.85345 0.84771 0.85910 0.90020 0.92365 0.87459 0.89881 0.87129 0.90740 0.90535 0.88074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.58 11.14 21.88 0.24 -42.34 16 2 C 0.03 1.82 5.25 85.37 0.45 2.27 16 3 Si 0.98 40.67 29.57 68.60 2.03 42.70 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 6 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 7 C -0.46 -26.42 7.68 23.41 0.18 -26.24 16 8 H 0.08 4.98 5.92 -2.91 -0.02 4.97 16 9 C 0.12 6.82 5.51 -21.10 -0.12 6.70 16 10 C -0.17 -9.04 8.62 22.72 0.20 -8.84 16 11 C -0.08 -3.62 10.01 22.26 0.22 -3.40 16 12 C -0.24 -9.95 10.03 22.41 0.22 -9.72 16 13 C -0.04 -1.83 9.60 22.52 0.22 -1.62 16 14 C -0.28 -14.79 5.92 -19.71 -0.12 -14.90 16 15 C 0.50 26.16 7.84 70.20 0.55 26.71 16 16 O -0.55 -30.67 13.39 19.75 0.26 -30.40 16 17 O -0.36 -16.00 9.48 -55.29 -0.52 -16.52 16 18 C 0.06 2.20 4.93 71.98 0.35 2.55 16 19 C 0.08 2.15 3.71 30.97 0.11 2.27 16 20 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 21 C -0.14 -2.52 6.64 31.58 0.21 -2.31 16 22 C -0.15 -2.17 7.16 31.89 0.23 -1.94 16 23 C 0.03 0.62 7.72 72.66 0.56 1.18 16 24 O -0.40 -11.94 11.20 -147.98 -1.66 -13.59 16 25 H 0.29 13.80 8.29 -92.71 -0.77 13.03 16 26 H 0.11 5.77 6.59 -2.91 -0.02 5.76 16 27 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 28 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 29 H 0.12 5.05 7.61 -2.91 -0.02 5.03 16 30 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.45 7.70 -2.39 -0.02 1.43 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -68.92 314.08 4.70 -64.21 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 1.07 Total: 23.25 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 3.27 Total: -27.30 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.24 Total: -42.34 kcal Atomic # 8 Polarization: -58.60 SS G_CDS: -1.92 Total: -60.52 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -68.92 4.70 -64.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916607591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.619 kcal (2) G-P(sol) polarization free energy of solvation -68.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds