Wall clock time and date at job start Mon Mar 30 2020 01:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30612 * 1 3 3 Si 1.86807 * 119.99997 * 2 1 4 4 H 1.48495 * 109.47332 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47177 * 299.99996 * 3 2 1 6 6 H 1.48502 * 109.46557 * 59.99708 * 3 2 1 7 7 C 1.40301 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00038 * 168.61478 * 7 2 1 9 9 C 1.40860 * 119.99665 * 348.61025 * 7 2 1 10 10 C 1.40701 * 120.33532 * 323.39123 * 9 7 2 11 11 C 1.37598 * 119.88780 * 180.02562 * 10 9 7 12 12 C 1.38838 * 120.58402 * 0.02562 * 11 10 9 13 13 C 1.38195 * 120.67932 * 359.97438 * 12 11 10 14 14 C 1.39287 * 120.09195 * 0.02562 * 13 12 11 15 15 C 1.47281 * 120.28995 * 179.97438 * 14 13 12 16 16 O 1.21534 * 120.00152 * 174.01524 * 15 14 13 17 17 O 1.34803 * 120.00150 * 354.01782 * 15 14 13 18 18 C 1.45204 * 117.00282 * 179.97438 * 17 15 14 19 19 C 1.52992 * 109.47298 * 180.02562 * 18 17 15 20 20 H 1.08997 * 110.45866 * 52.39324 * 19 18 17 21 21 C 1.54507 * 110.51228 * 175.00133 * 19 18 17 22 22 C 1.54480 * 104.06672 * 118.64210 * 21 19 18 23 23 O 1.44422 * 104.80246 * 23.97826 * 22 21 19 24 24 C 1.44427 * 105.27458 * 319.49234 * 23 22 21 25 25 H 0.96996 * 120.00339 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.05829 * 0.04453 * 10 9 7 27 27 H 1.08007 * 119.70785 * 179.72202 * 11 10 9 28 28 H 1.08003 * 119.65654 * 180.02562 * 12 11 10 29 29 H 1.08008 * 119.95452 * 180.02562 * 13 12 11 30 30 H 1.09000 * 109.46767 * 300.00216 * 18 17 15 31 31 H 1.08999 * 109.46857 * 59.99501 * 18 17 15 32 32 H 1.09011 * 110.51145 * 237.28744 * 21 19 18 33 33 H 1.08996 * 110.51132 * 359.85660 * 21 19 18 34 34 H 1.08998 * 110.37111 * 142.81021 * 22 21 19 35 35 H 1.08998 * 110.37487 * 265.03690 * 22 21 19 36 36 H 1.09004 * 110.37053 * 281.68001 * 24 23 22 37 37 H 1.09001 * 110.37192 * 159.34633 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.7001 1.3465 0.0006 5 1 1.8814 2.3965 -1.2125 6 1 1.8813 2.3964 1.2125 7 6 2.0077 -1.2150 0.0005 8 1 3.0718 -1.2242 -0.1841 9 6 1.3242 -2.4228 0.2420 10 6 0.2673 -2.4680 1.1697 11 6 -0.3936 -3.6529 1.3988 12 6 -0.0271 -4.8085 0.7222 13 6 1.0073 -4.7911 -0.1940 14 6 1.6957 -3.6072 -0.4477 15 6 2.7992 -3.5838 -1.4228 16 8 3.3243 -2.5292 -1.7212 17 8 3.2267 -4.7323 -1.9846 18 6 4.3178 -4.6338 -2.9375 19 6 4.6618 -6.0282 -3.4649 20 1 3.7669 -6.5254 -3.8391 21 6 5.7348 -5.9384 -4.5730 22 6 6.9272 -6.7409 -4.0069 23 8 6.3399 -7.6478 -3.0485 24 6 5.3329 -6.8743 -2.3604 25 1 -0.4850 0.8400 0.0004 26 1 -0.0248 -1.5741 1.7009 27 1 -1.2016 -3.6853 2.1149 28 1 -0.5565 -5.7303 0.9134 29 1 1.2824 -5.6969 -0.7140 30 1 4.0180 -3.9952 -3.7684 31 1 5.1914 -4.2049 -2.4466 32 1 5.3712 -6.3935 -5.4945 33 1 6.0184 -4.9005 -4.7469 34 1 7.4218 -7.2979 -4.8026 35 1 7.6350 -6.0732 -3.5156 36 1 5.7951 -6.2272 -1.6149 37 1 4.6027 -7.5338 -1.8912 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919034383.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:26 Heat of formation + Delta-G solvation = -121.458163 kcal Electronic energy + Delta-G solvation = -20947.208727 eV Core-core repulsion = 17653.916381 eV Total energy + Delta-G solvation = -3293.292346 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.80588 -39.04117 -37.28223 -35.41830 -33.77356 -32.90930 -30.19856 -29.78950 -29.39537 -26.09041 -25.31031 -23.07370 -22.36738 -21.07290 -20.47541 -19.64535 -17.50097 -16.90598 -16.32448 -16.18299 -15.76836 -15.39120 -15.07532 -14.93653 -14.27728 -13.84388 -13.44409 -13.11617 -12.85776 -12.71403 -12.39600 -12.00580 -11.84855 -11.69211 -11.47730 -11.22126 -11.14518 -10.94339 -10.73989 -10.69721 -10.61777 -10.21272 -9.94639 -9.84890 -9.73559 -9.35521 -8.86800 -7.69672 -7.46067 -6.91697 -4.51508 2.16416 2.74732 3.04732 3.13380 3.15282 3.43482 3.85694 3.89925 3.90752 4.50054 4.56669 4.64796 4.82427 4.98916 5.16157 5.30515 5.48098 5.53272 5.54828 5.64611 5.71302 5.78547 5.84658 6.00759 6.08194 6.17460 6.30704 6.54996 6.67615 6.88109 7.00088 7.10070 7.27190 7.41339 7.56781 7.83726 7.89727 8.08795 8.52523 8.66621 8.74712 9.04652 10.04855 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019811 B = 0.004804 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.041490 B = 5827.534317 C = 6993.519700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.420 4.420 8 H 0.103 0.897 9 C 0.151 3.849 10 C -0.149 4.149 11 C -0.089 4.089 12 C -0.246 4.246 13 C -0.037 4.037 14 C -0.248 4.248 15 C 0.505 3.495 16 O -0.514 6.514 17 O -0.370 6.370 18 C 0.078 3.922 19 C -0.121 4.121 20 H 0.094 0.906 21 C -0.149 4.149 22 C 0.044 3.956 23 O -0.379 6.379 24 C 0.052 3.948 25 H 0.284 0.716 26 H 0.115 0.885 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.921 -7.198 -4.878 11.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.147 4.147 3 Si 0.740 3.260 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.448 4.448 8 H 0.121 0.879 9 C 0.147 3.853 10 C -0.167 4.167 11 C -0.108 4.108 12 C -0.265 4.265 13 C -0.056 4.056 14 C -0.251 4.251 15 C 0.355 3.645 16 O -0.405 6.405 17 O -0.289 6.289 18 C 0.003 3.997 19 C -0.139 4.139 20 H 0.113 0.887 21 C -0.187 4.187 22 C -0.033 4.033 23 O -0.298 6.298 24 C -0.024 4.024 25 H 0.095 0.905 26 H 0.133 0.867 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.960 -6.949 -4.963 11.017 hybrid contribution 0.151 1.115 -0.245 1.151 sum 7.111 -5.835 -5.208 10.571 Atomic orbital electron populations 1.69705 1.07810 1.29829 1.33745 1.26102 0.94796 1.01756 0.92088 0.86113 0.81256 0.80111 0.78495 1.18038 1.19781 1.19681 1.20138 0.97607 0.89737 1.37274 0.87922 1.17444 0.89602 0.90959 0.87301 1.21237 0.99162 0.96445 0.99905 1.20857 0.98019 0.93523 0.98357 1.20368 1.03328 0.97525 1.05305 1.20840 0.93891 0.95717 0.95123 1.18790 1.03466 0.96935 1.05947 1.21378 0.82794 0.80500 0.79785 1.90747 1.57018 1.31107 1.61602 1.86579 1.49671 1.37502 1.55124 1.22801 0.89317 0.95726 0.91867 1.22546 0.99720 0.95809 0.95859 0.88737 1.22935 0.95316 1.01811 0.98614 1.23400 0.95325 0.92430 0.92101 1.89113 1.53115 1.34917 1.52631 1.23517 0.90175 0.94525 0.94211 0.90505 0.86704 0.88786 0.88721 0.87921 0.91542 0.91725 0.90119 0.90023 0.89144 0.92214 0.91831 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.97 11.44 55.57 0.64 -19.33 16 2 C 0.07 1.81 5.20 -17.29 -0.09 1.72 16 3 Si 0.92 19.07 29.58 -169.99 -5.03 14.04 16 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.42 -11.30 7.56 -37.82 -0.29 -11.58 16 8 H 0.10 2.85 6.08 -52.49 -0.32 2.53 16 9 C 0.15 3.99 5.46 -106.53 -0.58 3.41 16 10 C -0.15 -3.69 8.62 -38.89 -0.34 -4.02 16 11 C -0.09 -1.96 10.01 -39.59 -0.40 -2.36 16 12 C -0.25 -5.23 10.03 -39.38 -0.39 -5.63 16 13 C -0.04 -0.82 9.60 -39.21 -0.38 -1.20 16 14 C -0.25 -6.17 5.92 -104.39 -0.62 -6.79 16 15 C 0.51 11.98 7.84 34.41 0.27 12.25 16 16 O -0.51 -13.27 13.44 -19.29 -0.26 -13.53 16 17 O -0.37 -7.25 9.41 -40.78 -0.38 -7.64 16 18 C 0.08 1.22 4.62 37.15 0.17 1.39 16 19 C -0.12 -1.50 3.40 -89.06 -0.30 -1.80 16 20 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 21 C -0.15 -1.47 6.74 -25.16 -0.17 -1.64 16 22 C 0.04 0.44 7.63 37.93 0.29 0.73 16 23 O -0.38 -4.92 11.65 -35.23 -0.41 -5.33 16 24 C 0.05 0.66 7.11 37.93 0.27 0.93 16 25 H 0.28 6.50 8.29 -40.82 -0.34 6.17 16 26 H 0.11 2.88 6.87 -52.48 -0.36 2.52 16 27 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 28 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 29 H 0.10 2.02 7.62 -52.48 -0.40 1.62 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.01 7.96 -51.93 -0.41 0.60 16 32 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 33 H 0.08 0.75 7.73 -51.93 -0.40 0.35 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.82 7.75 -51.93 -0.40 0.42 16 37 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 313.84 15.07 4.73 4.73 Total: -1.00 -29.07 313.84 -8.08 -37.15 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -4.81 Total: 4.50 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -2.55 Total: -14.60 kcal Atomic # 7 Polarization: -19.97 SS G_CDS: 0.64 Total: -19.33 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -1.05 Total: -26.49 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.07 -8.08 -37.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919034383.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.311 kcal (2) G-P(sol) polarization free energy of solvation -29.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds