Wall clock time and date at job start Mon Mar 30 2020 01:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30612 * 1 3 3 Si 1.86807 * 119.99997 * 2 1 4 4 H 1.48495 * 109.47332 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47177 * 299.99996 * 3 2 1 6 6 H 1.48502 * 109.46557 * 59.99708 * 3 2 1 7 7 C 1.40301 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00038 * 168.61478 * 7 2 1 9 9 C 1.40860 * 119.99665 * 348.61025 * 7 2 1 10 10 C 1.40701 * 120.33532 * 323.39123 * 9 7 2 11 11 C 1.37598 * 119.88780 * 180.02562 * 10 9 7 12 12 C 1.38838 * 120.58402 * 0.02562 * 11 10 9 13 13 C 1.38195 * 120.67932 * 359.97438 * 12 11 10 14 14 C 1.39287 * 120.09195 * 0.02562 * 13 12 11 15 15 C 1.47281 * 120.28995 * 179.97438 * 14 13 12 16 16 O 1.21534 * 120.00152 * 174.01524 * 15 14 13 17 17 O 1.34803 * 120.00150 * 354.01782 * 15 14 13 18 18 C 1.45204 * 117.00282 * 179.97438 * 17 15 14 19 19 C 1.52992 * 109.47298 * 180.02562 * 18 17 15 20 20 H 1.08997 * 110.45866 * 52.39324 * 19 18 17 21 21 C 1.54507 * 110.51228 * 175.00133 * 19 18 17 22 22 C 1.54480 * 104.06672 * 118.64210 * 21 19 18 23 23 O 1.44422 * 104.80246 * 23.97826 * 22 21 19 24 24 C 1.44427 * 105.27458 * 319.49234 * 23 22 21 25 25 H 0.96996 * 120.00339 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.05829 * 0.04453 * 10 9 7 27 27 H 1.08007 * 119.70785 * 179.72202 * 11 10 9 28 28 H 1.08003 * 119.65654 * 180.02562 * 12 11 10 29 29 H 1.08008 * 119.95452 * 180.02562 * 13 12 11 30 30 H 1.09000 * 109.46767 * 300.00216 * 18 17 15 31 31 H 1.08999 * 109.46857 * 59.99501 * 18 17 15 32 32 H 1.09011 * 110.51145 * 237.28744 * 21 19 18 33 33 H 1.08996 * 110.51132 * 359.85660 * 21 19 18 34 34 H 1.08998 * 110.37111 * 142.81021 * 22 21 19 35 35 H 1.08998 * 110.37487 * 265.03690 * 22 21 19 36 36 H 1.09004 * 110.37053 * 281.68001 * 24 23 22 37 37 H 1.09001 * 110.37192 * 159.34633 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.7001 1.3465 0.0006 5 1 1.8814 2.3965 -1.2125 6 1 1.8813 2.3964 1.2125 7 6 2.0077 -1.2150 0.0005 8 1 3.0718 -1.2242 -0.1841 9 6 1.3242 -2.4228 0.2420 10 6 0.2673 -2.4680 1.1697 11 6 -0.3936 -3.6529 1.3988 12 6 -0.0271 -4.8085 0.7222 13 6 1.0073 -4.7911 -0.1940 14 6 1.6957 -3.6072 -0.4477 15 6 2.7992 -3.5838 -1.4228 16 8 3.3243 -2.5292 -1.7212 17 8 3.2267 -4.7323 -1.9846 18 6 4.3178 -4.6338 -2.9375 19 6 4.6618 -6.0282 -3.4649 20 1 3.7669 -6.5254 -3.8391 21 6 5.7348 -5.9384 -4.5730 22 6 6.9272 -6.7409 -4.0069 23 8 6.3399 -7.6478 -3.0485 24 6 5.3329 -6.8743 -2.3604 25 1 -0.4850 0.8400 0.0004 26 1 -0.0248 -1.5741 1.7009 27 1 -1.2016 -3.6853 2.1149 28 1 -0.5565 -5.7303 0.9134 29 1 1.2824 -5.6969 -0.7140 30 1 4.0180 -3.9952 -3.7684 31 1 5.1914 -4.2049 -2.4466 32 1 5.3712 -6.3935 -5.4945 33 1 6.0184 -4.9005 -4.7469 34 1 7.4218 -7.2979 -4.8026 35 1 7.6350 -6.0732 -3.5156 36 1 5.7951 -6.2272 -1.6149 37 1 4.6027 -7.5338 -1.8912 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919034383.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:26 Heat of formation + Delta-G solvation = -137.161211 kcal Electronic energy + Delta-G solvation = -20947.889662 eV Core-core repulsion = 17653.916381 eV Total energy + Delta-G solvation = -3293.973282 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.28674 -40.29373 -39.02902 -37.13803 -35.61057 -34.02953 -31.98163 -31.53360 -30.41832 -27.67788 -26.84881 -24.46263 -23.62316 -22.87634 -21.58832 -21.29937 -19.37032 -18.44710 -17.74521 -17.49356 -17.09462 -17.01013 -16.43523 -16.08252 -15.95839 -15.26067 -15.10635 -14.65811 -14.44839 -14.06263 -13.82718 -13.57154 -13.33085 -12.97724 -12.89814 -12.79244 -12.56227 -12.37804 -12.30025 -12.10692 -11.98345 -11.71190 -11.52084 -11.36723 -11.18028 -10.81178 -10.72228 -9.52568 -9.31817 -8.75960 -6.46213 0.32033 0.97483 1.33641 1.46326 1.48795 1.91104 2.01973 2.18433 2.70446 2.98626 3.51213 3.61008 3.69464 3.81480 4.09360 4.16343 4.27522 4.37468 4.40514 4.45585 4.51267 4.59588 4.75190 4.83046 4.84863 4.87189 5.02760 5.06096 5.11680 5.16499 5.25950 5.50291 5.61195 5.77600 5.79122 5.98678 6.04422 6.27019 6.60166 6.76218 6.85913 7.23465 8.23325 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019811 B = 0.004804 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.041490 B = 5827.534317 C = 6993.519700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.036 3.964 3 Si 0.980 3.020 4 H -0.268 1.268 5 H -0.266 1.266 6 H -0.252 1.252 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.123 3.877 10 C -0.174 4.174 11 C -0.082 4.082 12 C -0.236 4.236 13 C -0.039 4.039 14 C -0.274 4.274 15 C 0.506 3.494 16 O -0.544 6.544 17 O -0.363 6.363 18 C 0.074 3.926 19 C -0.114 4.114 20 H 0.099 0.901 21 C -0.143 4.143 22 C 0.039 3.961 23 O -0.395 6.395 24 C 0.051 3.949 25 H 0.293 0.707 26 H 0.102 0.898 27 H 0.127 0.873 28 H 0.135 0.865 29 H 0.129 0.871 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.814 -8.543 -5.423 12.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.192 1.192 5 H -0.191 1.191 6 H -0.176 1.176 7 C -0.487 4.487 8 H 0.099 0.901 9 C 0.120 3.880 10 C -0.193 4.193 11 C -0.100 4.100 12 C -0.255 4.255 13 C -0.057 4.057 14 C -0.277 4.277 15 C 0.357 3.643 16 O -0.437 6.437 17 O -0.281 6.281 18 C 0.000 4.000 19 C -0.133 4.133 20 H 0.118 0.882 21 C -0.181 4.181 22 C -0.037 4.037 23 O -0.314 6.314 24 C -0.025 4.025 25 H 0.104 0.896 26 H 0.120 0.880 27 H 0.145 0.855 28 H 0.153 0.847 29 H 0.147 0.853 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.132 0.868 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.845 -8.328 -5.509 12.106 hybrid contribution 0.188 1.322 -0.112 1.340 sum 7.034 -7.006 -5.622 11.409 Atomic orbital electron populations 1.69716 1.08735 1.31086 1.34542 1.26794 0.95594 1.04320 0.91314 0.85188 0.79123 0.76256 0.79342 1.19169 1.19052 1.17648 1.20114 0.96929 0.91361 1.40267 0.90085 1.17808 0.90561 0.91643 0.87997 1.21224 1.00155 0.97377 1.00571 1.21258 0.97864 0.92686 0.98216 1.20855 1.02387 0.98659 1.03566 1.21164 0.93619 0.95634 0.95294 1.19161 1.04425 0.97670 1.06410 1.21348 0.82453 0.80934 0.79599 1.90722 1.57971 1.32441 1.62564 1.86537 1.50703 1.35351 1.55540 1.23132 0.87859 0.98186 0.90870 1.22540 1.00766 0.93383 0.96598 0.88245 1.22960 0.94294 1.02567 0.98251 1.23626 0.95357 0.92527 0.92223 1.89099 1.53226 1.35797 1.53306 1.23487 0.90341 0.94498 0.94214 0.89611 0.87961 0.85477 0.84683 0.85295 0.91620 0.91991 0.88263 0.89314 0.86806 0.91751 0.92642 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.41 11.44 21.89 0.25 -42.16 16 2 C 0.04 1.86 5.20 85.38 0.44 2.31 16 3 Si 0.98 40.11 29.58 68.60 2.03 42.13 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 7 C -0.46 -25.84 7.56 23.41 0.18 -25.67 16 8 H 0.08 4.78 6.08 -2.91 -0.02 4.76 16 9 C 0.12 6.73 5.46 -21.10 -0.12 6.62 16 10 C -0.17 -8.76 8.62 22.72 0.20 -8.57 16 11 C -0.08 -3.46 10.01 22.26 0.22 -3.24 16 12 C -0.24 -9.31 10.03 22.40 0.22 -9.09 16 13 C -0.04 -1.66 9.60 22.51 0.22 -1.44 16 14 C -0.27 -13.77 5.92 -19.71 -0.12 -13.89 16 15 C 0.51 24.49 7.84 70.20 0.55 25.04 16 16 O -0.54 -29.18 13.44 19.73 0.27 -28.92 16 17 O -0.36 -14.17 9.41 -57.15 -0.54 -14.71 16 18 C 0.07 2.27 4.62 71.98 0.33 2.61 16 19 C -0.11 -2.66 3.40 -9.78 -0.03 -2.69 16 20 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 21 C -0.14 -2.48 6.74 31.61 0.21 -2.27 16 22 C 0.04 0.68 7.63 72.49 0.55 1.24 16 23 O -0.40 -9.58 11.65 -148.98 -1.74 -11.32 16 24 C 0.05 1.24 7.11 72.48 0.52 1.76 16 25 H 0.29 13.62 8.29 -92.71 -0.77 12.85 16 26 H 0.10 5.29 6.87 -2.91 -0.02 5.27 16 27 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 28 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 29 H 0.13 4.73 7.62 -2.91 -0.02 4.70 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 1.95 7.96 -2.39 -0.02 1.93 16 32 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.09 1.43 7.73 -2.39 -0.02 1.42 16 34 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 1.42 7.75 -2.38 -0.02 1.40 16 37 H 0.10 2.33 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -64.55 313.84 4.72 -59.83 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 1.07 Total: 22.42 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 3.38 Total: -27.28 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.25 Total: -42.16 kcal Atomic # 8 Polarization: -52.93 SS G_CDS: -2.01 Total: -54.94 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.13 kcal Total: -64.55 4.72 -59.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919034383.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.332 kcal (2) G-P(sol) polarization free energy of solvation -64.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds