Wall clock time and date at job start Mon Mar 30 2020 02:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21262 * 120.00004 * 2 1 4 4 C 1.47168 * 120.00520 * 180.02562 * 2 1 3 5 5 C 1.39851 * 120.17582 * 180.02562 * 4 2 1 6 6 C 1.37885 * 119.82281 * 180.29957 * 5 4 2 7 7 C 1.38402 * 120.17407 * 359.43610 * 6 5 4 8 8 C 1.50696 * 119.82806 * 180.28065 * 7 6 5 9 9 C 1.50700 * 109.47405 * 270.28028 * 8 7 6 10 10 O 1.20820 * 119.99963 * 359.97438 * 9 8 7 11 11 O 1.34229 * 119.99797 * 180.02562 * 9 8 7 12 12 C 1.45198 * 116.99604 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47060 * 179.97438 * 12 11 9 14 14 C 1.50704 * 109.47308 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99605 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00145 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00089 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99950 * 359.97438 * 16 14 13 19 19 H 1.48511 * 109.47035 * 89.99700 * 18 16 14 20 20 H 1.48499 * 109.47276 * 209.99571 * 18 16 14 21 21 H 1.48498 * 109.47184 * 329.99992 * 18 16 14 22 22 C 1.38410 * 120.34833 * 0.56494 * 7 6 5 23 23 C 1.37892 * 120.16928 * 359.71584 * 22 7 6 24 24 H 1.09005 * 109.46530 * 269.99786 * 1 2 3 25 25 H 1.09000 * 109.47058 * 29.99503 * 1 2 3 26 26 H 1.08998 * 109.46815 * 149.99860 * 1 2 3 27 27 H 1.08002 * 120.08457 * 0.02562 * 5 4 2 28 28 H 1.07998 * 119.91348 * 179.72125 * 6 5 4 29 29 H 1.09002 * 109.46875 * 30.28498 * 8 7 6 30 30 H 1.09007 * 109.47167 * 150.27884 * 8 7 6 31 31 H 1.09004 * 109.47073 * 299.99193 * 12 11 9 32 32 H 1.09001 * 109.47625 * 59.99330 * 12 11 9 33 33 H 1.09004 * 109.46697 * 299.99642 * 13 12 11 34 34 H 1.08996 * 109.47378 * 59.99814 * 13 12 11 35 35 H 0.96995 * 119.99887 * 180.02562 * 17 16 14 36 36 H 1.07999 * 119.91764 * 179.69813 * 22 7 6 37 37 H 1.08001 * 120.08323 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2429 -1.2744 -0.0006 5 6 3.6414 -1.2786 0.0000 6 6 4.3236 -2.4769 -0.0068 7 6 3.6280 -3.6734 -0.0024 8 6 4.3815 -4.9785 -0.0035 9 6 4.6331 -5.4121 -1.4246 10 8 4.2405 -4.7315 -2.3424 11 8 5.2926 -6.5550 -1.6707 12 6 5.4995 -6.9099 -3.0634 13 6 6.2634 -8.2330 -3.1445 14 6 6.4775 -8.6017 -4.5900 15 1 6.1056 -7.9569 -5.3725 16 6 7.1483 -9.7621 -4.9135 17 7 7.3348 -10.0840 -6.1749 18 14 7.7923 -10.8769 -3.5600 19 1 6.7507 -11.8729 -3.2016 20 1 9.0088 -11.5826 -4.0368 21 1 8.1292 -10.0615 -2.3655 22 6 2.2439 -3.6777 -0.0029 23 6 1.5473 -2.4877 -0.0019 24 1 -0.3632 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 4.1856 -0.3457 0.0012 28 1 5.4036 -2.4818 -0.0110 29 1 5.3337 -4.8486 0.5109 30 1 3.7922 -5.7387 0.5095 31 1 4.5342 -7.0163 -3.5584 32 1 6.0761 -6.1270 -3.5561 33 1 7.2287 -8.1261 -2.6496 34 1 5.6872 -9.0161 -2.6518 35 1 7.8063 -10.9005 -6.4024 36 1 1.7082 -4.6154 -0.0043 37 1 0.4673 -2.4926 -0.0027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919271782.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:40 Heat of formation + Delta-G solvation = -111.672065 kcal Electronic energy + Delta-G solvation = -19741.336739 eV Core-core repulsion = 16448.468749 eV Total energy + Delta-G solvation = -3292.867989 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.56343 -39.92548 -38.50393 -36.26767 -33.52441 -33.29325 -31.64715 -30.88309 -30.32657 -28.14907 -25.27094 -23.35413 -22.86054 -20.96468 -20.58058 -20.00312 -17.60668 -17.36101 -16.65580 -16.49683 -16.01443 -15.81211 -15.38171 -15.22607 -14.61124 -14.33679 -14.23097 -13.89502 -13.60428 -13.23081 -12.80589 -12.57976 -12.49739 -12.34720 -12.29850 -12.02037 -11.52420 -11.31997 -11.29266 -10.73651 -10.62843 -10.09234 -10.04062 -9.96712 -9.74907 -9.38593 -9.26115 -9.09187 -8.65461 -6.15803 -4.17334 0.31505 1.11874 2.04882 2.42601 3.03130 3.25149 3.32785 3.36646 3.60106 3.72044 4.30275 4.35595 4.41101 4.63503 4.68872 4.85835 4.99944 5.02569 5.09603 5.13170 5.17582 5.24940 5.28295 5.50148 5.59885 5.71331 5.92034 5.92580 5.95748 6.09344 6.21411 6.40620 6.57006 6.74414 7.14489 7.17815 7.19255 7.58976 8.05793 8.36527 8.85756 9.43494 10.96759 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.045484 B = 0.002674 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.454725 B =10467.349264 C =10611.509883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.396 3.604 3 O -0.462 6.462 4 C -0.176 4.176 5 C -0.059 4.059 6 C -0.115 4.115 7 C -0.037 4.037 8 C -0.083 4.083 9 C 0.456 3.544 10 O -0.506 6.506 11 O -0.361 6.361 12 C 0.083 3.917 13 C -0.009 4.009 14 C -0.529 4.529 15 H 0.075 0.925 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.882 3.118 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.263 1.263 22 C -0.117 4.117 23 C -0.072 4.072 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.134 0.866 28 H 0.130 0.870 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.024 0.976 35 H 0.266 0.734 36 H 0.131 0.869 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.240 14.859 17.725 26.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.275 3.725 3 O -0.338 6.338 4 C -0.177 4.177 5 C -0.077 4.077 6 C -0.133 4.133 7 C -0.037 4.037 8 C -0.121 4.121 9 C 0.298 3.702 10 O -0.394 6.394 11 O -0.278 6.278 12 C 0.010 3.990 13 C -0.047 4.047 14 C -0.566 4.566 15 H 0.093 0.907 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.709 3.291 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.188 1.188 22 C -0.135 4.135 23 C -0.090 4.090 24 H 0.116 0.884 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.152 0.848 28 H 0.148 0.852 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.149 0.851 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.942 15.445 17.277 26.071 hybrid contribution 0.336 -0.819 0.304 0.936 sum -11.606 14.626 17.582 25.647 Atomic orbital electron populations 1.22243 0.93740 1.05071 1.04751 1.22529 0.91707 0.87596 0.70674 1.90539 1.72192 1.34382 1.36657 1.20515 0.94670 0.94751 1.07721 1.21370 0.93166 0.98568 0.94619 1.21038 1.00415 0.91517 1.00358 1.19638 0.93841 0.93801 0.96450 1.20400 1.03307 0.95693 0.92654 1.23253 0.75472 0.79640 0.91794 1.90682 1.47995 1.53936 1.46829 1.86477 1.68203 1.38771 1.34355 1.23399 1.00930 0.99232 0.75399 1.19629 0.95617 0.90737 0.98683 1.20840 1.37671 1.08162 0.89970 0.90665 1.24945 0.95185 0.97381 0.95532 1.69895 1.41722 1.25064 1.16759 0.86741 0.78794 0.80967 0.82631 1.20051 1.21154 1.18762 1.21021 0.93390 0.98550 1.00491 1.21413 1.00054 0.91281 0.96213 0.88417 0.89380 0.89379 0.84831 0.85184 0.86524 0.86497 0.91687 0.91669 0.95373 0.95803 0.92401 0.85146 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.13 9.76 36.00 0.35 -0.78 16 2 C 0.40 3.83 7.23 -30.69 -0.22 3.61 16 3 O -0.46 -6.02 17.09 5.57 0.10 -5.92 16 4 C -0.18 -1.75 5.87 -105.06 -0.62 -2.37 16 5 C -0.06 -0.63 9.60 -39.11 -0.38 -1.01 16 6 C -0.12 -1.21 9.68 -39.65 -0.38 -1.59 16 7 C -0.04 -0.39 4.38 -104.50 -0.46 -0.85 16 8 C -0.08 -0.84 5.93 -29.04 -0.17 -1.01 16 9 C 0.46 7.08 7.95 36.01 0.29 7.37 16 10 O -0.51 -9.44 15.78 -18.74 -0.30 -9.74 16 11 O -0.36 -6.48 10.22 -39.26 -0.40 -6.88 16 12 C 0.08 1.73 5.40 37.16 0.20 1.93 16 13 C -0.01 -0.22 4.42 -27.88 -0.12 -0.34 16 14 C -0.53 -14.90 9.66 -34.44 -0.33 -15.23 16 15 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 17 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 18 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 22 C -0.12 -1.09 9.68 -39.64 -0.38 -1.48 16 23 C -0.07 -0.60 9.37 -39.10 -0.37 -0.97 16 24 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.36 6.47 -51.93 -0.34 0.02 16 27 H 0.13 1.37 7.65 -52.49 -0.40 0.97 16 28 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 29 H 0.12 0.92 8.08 -51.93 -0.42 0.50 16 30 H 0.12 0.89 8.08 -51.92 -0.42 0.47 16 31 H 0.06 1.37 8.13 -51.93 -0.42 0.95 16 32 H 0.06 1.38 8.13 -51.93 -0.42 0.96 16 33 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 34 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 35 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.13 0.71 6.36 -52.49 -0.33 0.37 16 LS Contribution 326.04 15.07 4.91 4.91 Total: -1.00 -34.29 326.04 -7.08 -41.37 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -4.80 Total: -3.05 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -2.69 Total: -10.76 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.77 Total: -26.40 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.60 Total: -22.55 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.29 -7.08 -41.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919271782.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.305 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds