Wall clock time and date at job start Mon Mar 30 2020 02:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47170 * 2 1 4 4 O 1.20765 * 119.99862 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99871 * 180.02562 * 3 2 1 6 6 H 1.08993 * 109.47427 * 44.99874 * 5 3 2 7 7 C 1.53001 * 109.46878 * 284.99459 * 5 3 2 8 8 O 1.45199 * 109.46720 * 165.00002 * 5 3 2 9 9 C 1.34712 * 116.99882 * 209.99643 * 8 5 3 10 10 O 1.21471 * 119.99767 * 359.97438 * 9 8 5 11 11 C 1.47771 * 119.99962 * 179.97438 * 9 8 5 12 12 C 1.39967 * 120.02963 * 359.72406 * 11 9 8 13 13 C 1.38321 * 120.34983 * 179.76278 * 12 11 9 14 14 C 1.37758 * 120.41645 * 0.51369 * 13 12 11 15 15 C 1.40756 * 120.05112 * 359.74559 * 14 13 12 16 16 C 1.41443 * 120.17225 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00621 * 24.43154 * 16 15 14 18 18 C 1.39936 * 119.99892 * 204.43245 * 16 15 14 19 19 N 1.30829 * 119.99944 * 17.89036 * 18 16 15 20 20 Si 1.86796 * 120.00246 * 197.89153 * 18 16 15 21 21 H 1.48496 * 109.47182 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47293 * 119.99915 * 20 18 16 23 23 H 1.48498 * 109.47551 * 239.99780 * 20 18 16 24 24 C 1.39049 * 120.02699 * 180.02562 * 11 9 8 25 25 H 1.08998 * 109.47288 * 60.00280 * 1 2 3 26 26 H 1.09002 * 109.47190 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47090 * 300.00189 * 1 2 3 28 28 H 1.09007 * 109.47186 * 240.00255 * 2 1 3 29 29 H 1.08997 * 109.47581 * 120.00181 * 2 1 3 30 30 H 1.08993 * 109.47430 * 300.00413 * 7 5 3 31 31 H 1.08999 * 109.47044 * 180.02562 * 7 5 3 32 32 H 1.09000 * 109.47012 * 60.00566 * 7 5 3 33 33 H 1.07995 * 119.82543 * 0.02562 * 12 11 9 34 34 H 1.07992 * 119.79263 * 180.25779 * 13 12 11 35 35 H 1.07998 * 119.97569 * 179.75854 * 14 13 12 36 36 H 0.97003 * 120.00046 * 179.97438 * 19 18 16 37 37 H 1.07999 * 120.20864 * 359.95645 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2475 2.3387 -0.0005 5 6 3.5139 1.6962 -0.0006 6 1 4.0036 1.0483 -0.7275 7 6 4.0841 1.4222 1.3926 8 8 3.7480 3.0847 -0.3548 9 6 4.8994 3.3670 -0.9944 10 8 5.6866 2.4775 -1.2489 11 6 5.2049 4.7586 -1.3865 12 6 4.2956 5.7831 -1.0988 13 6 4.5770 7.0887 -1.4584 14 6 5.7499 7.3945 -2.1130 15 6 6.6741 6.3769 -2.4158 16 6 7.8794 6.6881 -3.0873 17 1 8.2895 7.6853 -3.0267 18 6 8.5405 5.7038 -3.8304 19 7 7.9016 4.6236 -4.1999 20 14 10.3354 5.9320 -4.2948 21 1 10.8242 7.2282 -3.7598 22 1 11.1403 4.8245 -3.7195 23 1 10.4690 5.9244 -5.7738 24 6 6.3930 5.0505 -2.0473 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.5944 2.0701 2.1194 31 1 5.1556 1.6218 1.3923 32 1 3.9084 0.3798 1.6585 33 1 3.3714 5.5535 -0.5895 34 1 3.8709 7.8727 -1.2283 35 1 5.9606 8.4158 -2.3940 36 1 8.3597 3.9414 -4.7153 37 1 7.0958 4.2628 -2.2752 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919310708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:35 Heat of formation + Delta-G solvation = -117.545040 kcal Electronic energy + Delta-G solvation = -20717.068508 eV Core-core repulsion = 17423.945847 eV Total energy + Delta-G solvation = -3293.122661 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.35041 -39.16410 -37.37502 -35.80607 -33.78112 -33.27349 -31.77847 -30.17090 -29.50739 -25.93719 -25.41683 -24.12404 -22.36501 -20.99924 -19.80547 -19.50656 -17.93803 -16.85805 -16.52273 -15.87208 -15.64871 -15.22243 -15.10000 -14.74101 -14.29870 -13.68181 -13.46403 -13.18387 -12.91581 -12.64687 -12.60158 -12.50363 -12.29058 -12.02154 -11.69682 -11.50631 -11.35263 -11.21181 -11.11337 -10.78223 -10.53329 -10.52305 -10.24773 -9.74955 -9.66172 -9.39649 -9.26092 -7.76453 -7.56772 -6.84671 -4.45119 1.81979 1.94139 2.75880 2.90424 3.05624 3.09980 3.12188 3.54824 3.88916 3.96278 4.55473 4.67208 4.78269 4.92602 4.94706 5.03390 5.28204 5.40643 5.52717 5.56468 5.63298 5.68018 5.74957 5.95704 6.00629 6.13151 6.42850 6.59766 6.86977 6.92507 6.96027 7.15297 7.29686 7.39867 7.67451 7.74440 7.89410 8.08552 8.42639 8.48573 8.75311 8.77496 10.10759 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.026694 B = 0.004102 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.660178 B = 6823.678921 C = 7441.473988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.169 4.169 3 C 0.355 3.645 4 O -0.426 6.426 5 C 0.033 3.967 6 H 0.110 0.890 7 C -0.161 4.161 8 O -0.334 6.334 9 C 0.512 3.488 10 O -0.517 6.517 11 C -0.116 4.116 12 C -0.191 4.191 13 C -0.104 4.104 14 C -0.200 4.200 15 C 0.095 3.905 16 C -0.460 4.460 17 H 0.083 0.917 18 C 0.073 3.927 19 N -0.787 5.787 20 Si 0.911 3.089 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.274 1.274 24 C -0.089 4.089 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.284 0.716 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.201 -8.959 6.935 13.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.206 4.206 3 C 0.227 3.773 4 O -0.296 6.296 5 C -0.023 4.023 6 H 0.127 0.873 7 C -0.218 4.218 8 O -0.251 6.251 9 C 0.359 3.641 10 O -0.407 6.407 11 C -0.117 4.117 12 C -0.211 4.211 13 C -0.122 4.122 14 C -0.220 4.220 15 C 0.092 3.908 16 C -0.489 4.489 17 H 0.101 0.899 18 C -0.146 4.146 19 N -0.412 5.412 20 Si 0.735 3.265 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.108 4.108 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.385 -8.961 6.724 13.418 hybrid contribution 0.921 -0.230 -0.350 1.011 sum -6.464 -9.191 6.374 12.919 Atomic orbital electron populations 1.21599 0.93379 1.01897 1.03307 1.22022 0.98519 0.95021 1.05035 1.24634 0.89497 0.91489 0.71641 1.90423 1.58297 1.47619 1.33245 1.23042 0.95746 0.84028 0.99509 0.87279 1.22073 1.02903 1.02513 0.94314 1.86784 1.40914 1.27359 1.70082 1.22013 0.78031 0.90827 0.73203 1.90745 1.48201 1.48553 1.53210 1.18811 0.98722 0.87557 1.06633 1.20623 0.99802 0.92559 1.08095 1.20521 0.96957 0.95141 0.99583 1.21203 0.95148 0.98696 1.06921 1.17543 0.92300 0.90564 0.90377 1.19596 1.05271 0.97896 1.26114 0.89892 1.25967 1.00238 0.94275 0.94090 1.69791 1.37330 1.07627 1.26462 0.86218 0.81877 0.79758 0.78670 1.18301 1.19574 1.19900 1.21653 0.94785 0.98347 0.96027 0.91947 0.91860 0.92014 0.88054 0.88107 0.91192 0.90471 0.90408 0.87695 0.88463 0.88291 0.90496 0.84636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.20 37.15 0.34 -0.90 16 2 C -0.17 -1.44 6.34 -27.88 -0.18 -1.61 16 3 C 0.36 4.71 6.45 -29.03 -0.19 4.52 16 4 O -0.43 -7.22 16.19 -13.24 -0.21 -7.43 16 5 C 0.03 0.49 2.92 -27.88 -0.08 0.41 16 6 H 0.11 1.57 7.16 -51.93 -0.37 1.20 16 7 C -0.16 -1.91 9.52 37.16 0.35 -1.56 16 8 O -0.33 -6.61 8.70 -47.08 -0.41 -7.02 16 9 C 0.51 11.60 7.87 34.63 0.27 11.87 16 10 O -0.52 -12.29 15.59 -19.24 -0.30 -12.59 16 11 C -0.12 -2.85 5.87 -105.05 -0.62 -3.46 16 12 C -0.19 -4.38 9.62 -38.90 -0.37 -4.75 16 13 C -0.10 -2.30 10.01 -39.73 -0.40 -2.70 16 14 C -0.20 -4.77 9.78 -38.81 -0.38 -5.15 16 15 C 0.09 2.49 5.57 -106.87 -0.60 1.90 16 16 C -0.46 -11.94 9.05 -37.73 -0.34 -12.29 16 17 H 0.08 2.05 7.91 -52.49 -0.41 1.63 16 18 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 19 N -0.79 -20.54 10.96 55.55 0.61 -19.93 16 20 Si 0.91 18.48 29.59 -169.99 -5.03 13.45 16 21 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 24 C -0.09 -2.36 8.24 -38.43 -0.32 -2.67 16 25 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 28 H 0.10 0.72 8.14 -51.92 -0.42 0.29 16 29 H 0.10 0.61 7.89 -51.93 -0.41 0.20 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 0.63 7.89 -51.93 -0.41 0.22 16 33 H 0.10 2.25 7.59 -52.49 -0.40 1.85 16 34 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 36 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 37 H 0.14 3.82 5.74 -52.49 -0.30 3.52 16 LS Contribution 325.30 15.07 4.90 4.90 Total: -1.00 -30.49 325.30 -7.85 -38.33 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.82 Total: 4.94 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -2.59 Total: -14.65 kcal Atomic # 7 Polarization: -20.54 SS G_CDS: 0.61 Total: -19.93 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.92 Total: -27.04 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.49 -7.85 -38.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919310708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.210 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds