Wall clock time and date at job start Mon Mar 30 2020 02:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47031 * 2 1 4 4 O 1.20754 * 120.00307 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99787 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.46792 * 319.99505 * 5 3 2 7 7 C 1.52993 * 109.47283 * 79.99693 * 5 3 2 8 8 O 1.45202 * 109.46613 * 199.99743 * 5 3 2 9 9 C 1.34707 * 116.99856 * 149.99866 * 8 5 3 10 10 O 1.21471 * 119.99787 * 359.97438 * 9 8 5 11 11 C 1.47765 * 120.00056 * 179.97438 * 9 8 5 12 12 C 1.39969 * 120.02952 * 359.71890 * 11 9 8 13 13 C 1.38317 * 120.34876 * 179.76341 * 12 11 9 14 14 C 1.37764 * 120.42124 * 0.52120 * 13 12 11 15 15 C 1.40752 * 120.04948 * 359.73979 * 14 13 12 16 16 C 1.41432 * 120.17678 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00033 * 334.91977 * 16 15 14 18 18 C 1.39940 * 120.00175 * 154.92017 * 16 15 14 19 19 N 1.30830 * 119.99802 * 342.59326 * 18 16 15 20 20 Si 1.86801 * 119.99945 * 162.59624 * 18 16 15 21 21 H 1.48507 * 109.47132 * 90.00095 * 20 18 16 22 22 H 1.48498 * 109.46980 * 209.99642 * 20 18 16 23 23 H 1.48494 * 109.47079 * 329.99622 * 20 18 16 24 24 C 1.39048 * 120.03081 * 180.02562 * 11 9 8 25 25 H 1.09004 * 109.47181 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47041 * 299.99821 * 1 2 3 27 27 H 1.08993 * 109.47406 * 60.00320 * 1 2 3 28 28 H 1.09004 * 109.47013 * 119.99878 * 2 1 3 29 29 H 1.09005 * 109.47295 * 239.99578 * 2 1 3 30 30 H 1.09005 * 109.47305 * 179.97438 * 7 5 3 31 31 H 1.09003 * 109.47406 * 299.99411 * 7 5 3 32 32 H 1.08996 * 109.47360 * 60.00159 * 7 5 3 33 33 H 1.07998 * 119.82514 * 0.02562 * 12 11 9 34 34 H 1.07996 * 119.78809 * 180.25446 * 13 12 11 35 35 H 1.07993 * 119.97394 * 179.75985 * 14 13 12 36 36 H 0.97001 * 119.99727 * 180.02562 * 19 18 16 37 37 H 1.08001 * 120.20547 * 359.95318 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2476 2.3387 -0.0005 5 6 3.5140 1.6962 -0.0006 6 1 4.0152 0.9885 0.6597 7 6 4.0606 1.5432 -1.4213 8 8 3.7549 3.0493 0.4677 9 6 4.9170 3.2764 1.1099 10 8 5.7073 2.3687 1.2747 11 6 5.2305 4.6296 1.6140 12 6 4.3229 5.6772 1.4193 13 6 4.6074 6.9453 1.8927 14 6 5.7913 7.1947 2.5515 15 6 6.7188 6.1551 2.7520 16 6 7.9348 6.4079 3.4285 17 1 8.3506 7.4046 3.4376 18 6 8.5993 5.3667 4.0862 19 7 7.9607 4.2615 4.3734 20 14 10.3980 5.5547 4.5539 21 1 10.4969 6.1438 5.9136 22 1 11.0542 4.2226 4.5428 23 1 11.0727 6.4470 3.5774 24 6 6.4301 4.8648 2.2765 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 5.1322 1.7428 -1.4218 31 1 3.8798 0.5274 -1.7729 32 1 3.5594 2.2509 -2.0816 33 1 3.3937 5.4935 0.9005 34 1 3.8988 7.7461 1.7411 35 1 6.0077 8.1884 2.9147 36 1 8.4212 3.5399 4.8295 37 1 7.1354 4.0605 2.4254 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919310709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:37 Heat of formation + Delta-G solvation = -117.574405 kcal Electronic energy + Delta-G solvation = -20715.433706 eV Core-core repulsion = 17422.309772 eV Total energy + Delta-G solvation = -3293.123934 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.35371 -39.17179 -37.37761 -35.80909 -33.77687 -33.24876 -31.79110 -30.17206 -29.51069 -25.97330 -25.41524 -24.10701 -22.34770 -21.00084 -19.80406 -19.52531 -17.93627 -16.86188 -16.52124 -15.86961 -15.64806 -15.23648 -15.08901 -14.74180 -14.29713 -13.66756 -13.48573 -13.18278 -12.91702 -12.65225 -12.60511 -12.48884 -12.29154 -12.01339 -11.70279 -11.50875 -11.35846 -11.19879 -11.10277 -10.79703 -10.53988 -10.53536 -10.25888 -9.75794 -9.66389 -9.39845 -9.25413 -7.76512 -7.56522 -6.84277 -4.45250 1.80589 1.93911 2.76589 2.91391 3.05401 3.07821 3.13461 3.54488 3.88980 3.96112 4.55801 4.67354 4.78647 4.92871 4.95949 5.02993 5.28077 5.40972 5.52409 5.56650 5.63646 5.68258 5.74879 5.95724 6.00671 6.12897 6.42349 6.59496 6.86653 6.92279 6.95663 7.15204 7.29442 7.39390 7.67093 7.74078 7.89017 8.08424 8.42235 8.48200 8.75200 8.77404 10.11287 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.026502 B = 0.004106 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.253107 B = 6817.684663 C = 7429.105178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.169 4.169 3 C 0.356 3.644 4 O -0.426 6.426 5 C 0.034 3.966 6 H 0.109 0.891 7 C -0.161 4.161 8 O -0.334 6.334 9 C 0.512 3.488 10 O -0.517 6.517 11 C -0.116 4.116 12 C -0.191 4.191 13 C -0.104 4.104 14 C -0.200 4.200 15 C 0.095 3.905 16 C -0.461 4.461 17 H 0.082 0.918 18 C 0.073 3.927 19 N -0.788 5.788 20 Si 0.911 3.089 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.260 1.260 24 C -0.088 4.088 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.284 0.716 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.319 -8.348 -7.266 13.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.206 4.206 3 C 0.228 3.772 4 O -0.296 6.296 5 C -0.023 4.023 6 H 0.126 0.874 7 C -0.218 4.218 8 O -0.252 6.252 9 C 0.359 3.641 10 O -0.407 6.407 11 C -0.117 4.117 12 C -0.211 4.211 13 C -0.122 4.122 14 C -0.219 4.219 15 C 0.093 3.907 16 C -0.490 4.490 17 H 0.100 0.900 18 C -0.145 4.145 19 N -0.413 5.413 20 Si 0.735 3.265 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.184 1.184 24 C -0.107 4.107 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.501 -8.372 -7.105 13.298 hybrid contribution 0.924 -0.247 0.338 1.014 sum -6.577 -8.619 -6.767 12.781 Atomic orbital electron populations 1.21599 0.93378 1.01904 1.03297 1.22027 0.98522 0.95033 1.05046 1.24627 0.89492 0.91477 0.71597 1.90415 1.58327 1.47635 1.33211 1.23048 0.95737 0.85271 0.98238 0.87361 1.22068 1.03031 1.02863 0.93841 1.86783 1.40126 1.30010 1.68250 1.22010 0.78128 0.90319 0.73621 1.90745 1.48455 1.45772 1.55711 1.18809 0.98555 0.88400 1.05970 1.20626 0.99811 0.92879 1.07751 1.20524 0.96881 0.95539 0.99264 1.21206 0.94887 0.99154 1.06690 1.17533 0.92365 0.90558 0.90261 1.19551 1.04647 0.96324 1.28444 0.89950 1.25962 1.00271 0.94406 0.93898 1.69781 1.37496 1.05281 1.28744 0.86268 0.81842 0.78817 0.79602 1.19412 1.19971 1.18359 1.21645 0.94558 0.98873 0.95657 0.91858 0.91939 0.92025 0.88032 0.88108 0.90453 0.90444 0.91170 0.87695 0.88460 0.88284 0.90450 0.84684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.20 37.16 0.34 -0.90 16 2 C -0.17 -1.45 6.36 -27.89 -0.18 -1.63 16 3 C 0.36 4.72 6.42 -29.03 -0.19 4.54 16 4 O -0.43 -7.19 16.24 -12.82 -0.21 -7.39 16 5 C 0.03 0.50 2.91 -27.88 -0.08 0.42 16 6 H 0.11 1.55 7.16 -51.93 -0.37 1.18 16 7 C -0.16 -1.93 9.53 37.15 0.35 -1.58 16 8 O -0.33 -6.60 8.73 -46.96 -0.41 -7.01 16 9 C 0.51 11.57 7.87 34.63 0.27 11.84 16 10 O -0.52 -12.26 15.59 -19.24 -0.30 -12.56 16 11 C -0.12 -2.84 5.87 -105.05 -0.62 -3.46 16 12 C -0.19 -4.37 9.62 -38.90 -0.37 -4.74 16 13 C -0.10 -2.30 10.01 -39.73 -0.40 -2.69 16 14 C -0.20 -4.76 9.78 -38.81 -0.38 -5.13 16 15 C 0.10 2.51 5.57 -106.87 -0.59 1.91 16 16 C -0.46 -11.96 9.05 -37.73 -0.34 -12.30 16 17 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 18 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 19 N -0.79 -20.56 10.97 55.55 0.61 -19.95 16 20 Si 0.91 18.47 29.59 -169.99 -5.03 13.44 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 24 C -0.09 -2.33 8.23 -38.42 -0.32 -2.65 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 27 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.10 2.24 7.59 -52.49 -0.40 1.84 16 34 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 35 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 36 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 37 H 0.14 3.80 5.77 -52.49 -0.30 3.50 16 LS Contribution 325.90 15.07 4.91 4.91 Total: -1.00 -30.38 325.90 -7.86 -38.24 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -4.85 Total: 4.96 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -2.59 Total: -14.64 kcal Atomic # 7 Polarization: -20.56 SS G_CDS: 0.61 Total: -19.95 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.92 Total: -26.96 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.38 -7.86 -38.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919310709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.331 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds