Wall clock time and date at job start Mon Mar 30 2020 02:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47031 * 2 1 4 4 O 1.20754 * 120.00307 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99787 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.46792 * 319.99505 * 5 3 2 7 7 C 1.52993 * 109.47283 * 79.99693 * 5 3 2 8 8 O 1.45202 * 109.46613 * 199.99743 * 5 3 2 9 9 C 1.34707 * 116.99856 * 149.99866 * 8 5 3 10 10 O 1.21471 * 119.99787 * 359.97438 * 9 8 5 11 11 C 1.47765 * 120.00056 * 179.97438 * 9 8 5 12 12 C 1.39969 * 120.02952 * 359.71890 * 11 9 8 13 13 C 1.38317 * 120.34876 * 179.76341 * 12 11 9 14 14 C 1.37764 * 120.42124 * 0.52120 * 13 12 11 15 15 C 1.40752 * 120.04948 * 359.73979 * 14 13 12 16 16 C 1.41432 * 120.17678 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00033 * 334.91977 * 16 15 14 18 18 C 1.39940 * 120.00175 * 154.92017 * 16 15 14 19 19 N 1.30830 * 119.99802 * 342.59326 * 18 16 15 20 20 Si 1.86801 * 119.99945 * 162.59624 * 18 16 15 21 21 H 1.48507 * 109.47132 * 90.00095 * 20 18 16 22 22 H 1.48498 * 109.46980 * 209.99642 * 20 18 16 23 23 H 1.48494 * 109.47079 * 329.99622 * 20 18 16 24 24 C 1.39048 * 120.03081 * 180.02562 * 11 9 8 25 25 H 1.09004 * 109.47181 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47041 * 299.99821 * 1 2 3 27 27 H 1.08993 * 109.47406 * 60.00320 * 1 2 3 28 28 H 1.09004 * 109.47013 * 119.99878 * 2 1 3 29 29 H 1.09005 * 109.47295 * 239.99578 * 2 1 3 30 30 H 1.09005 * 109.47305 * 179.97438 * 7 5 3 31 31 H 1.09003 * 109.47406 * 299.99411 * 7 5 3 32 32 H 1.08996 * 109.47360 * 60.00159 * 7 5 3 33 33 H 1.07998 * 119.82514 * 0.02562 * 12 11 9 34 34 H 1.07996 * 119.78809 * 180.25446 * 13 12 11 35 35 H 1.07993 * 119.97394 * 179.75985 * 14 13 12 36 36 H 0.97001 * 119.99727 * 180.02562 * 19 18 16 37 37 H 1.08001 * 120.20547 * 359.95318 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2476 2.3387 -0.0005 5 6 3.5140 1.6962 -0.0006 6 1 4.0152 0.9885 0.6597 7 6 4.0606 1.5432 -1.4213 8 8 3.7549 3.0493 0.4677 9 6 4.9170 3.2764 1.1099 10 8 5.7073 2.3687 1.2747 11 6 5.2305 4.6296 1.6140 12 6 4.3229 5.6772 1.4193 13 6 4.6074 6.9453 1.8927 14 6 5.7913 7.1947 2.5515 15 6 6.7188 6.1551 2.7520 16 6 7.9348 6.4079 3.4285 17 1 8.3506 7.4046 3.4376 18 6 8.5993 5.3667 4.0862 19 7 7.9607 4.2615 4.3734 20 14 10.3980 5.5547 4.5539 21 1 10.4969 6.1438 5.9136 22 1 11.0542 4.2226 4.5428 23 1 11.0727 6.4470 3.5774 24 6 6.4301 4.8648 2.2765 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 5.1322 1.7428 -1.4218 31 1 3.8798 0.5274 -1.7729 32 1 3.5594 2.2509 -2.0816 33 1 3.3937 5.4935 0.9005 34 1 3.8988 7.7461 1.7411 35 1 6.0077 8.1884 2.9147 36 1 8.4212 3.5399 4.8295 37 1 7.1354 4.0605 2.4254 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919310709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:36 Heat of formation + Delta-G solvation = -132.822869 kcal Electronic energy + Delta-G solvation = -20716.094929 eV Core-core repulsion = 17422.309772 eV Total energy + Delta-G solvation = -3293.785157 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.82732 -40.52583 -39.18452 -37.44839 -35.64717 -34.17077 -32.94750 -31.93449 -31.38445 -27.35511 -26.89252 -25.56699 -23.64188 -22.87717 -21.50165 -20.60112 -19.71117 -18.37478 -18.07483 -17.24061 -17.16135 -16.63654 -16.46864 -16.36527 -15.79762 -15.23599 -14.86157 -14.70852 -14.41618 -14.16817 -13.82941 -13.57714 -13.41381 -13.25612 -13.05712 -12.86688 -12.80050 -12.60932 -12.50707 -12.23391 -12.09976 -12.05007 -11.94384 -11.58759 -11.38833 -11.09649 -10.61017 -9.65794 -9.48055 -8.70164 -6.41894 0.07418 0.75489 0.93499 1.38185 1.44497 1.51084 1.54094 1.74863 2.19109 2.69856 2.84315 3.59320 3.71359 3.83978 3.90555 3.91154 4.24217 4.26084 4.37527 4.54542 4.58187 4.61969 4.72520 4.83640 4.97090 5.00054 5.02007 5.05586 5.08706 5.20236 5.25727 5.30965 5.41191 5.77456 5.85892 5.97690 6.18930 6.36019 6.49912 6.74577 6.83897 6.85544 8.27740 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.026502 B = 0.004106 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.253107 B = 6817.684663 C = 7429.105178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.160 4.160 3 C 0.362 3.638 4 O -0.470 6.470 5 C 0.015 3.985 6 H 0.113 0.887 7 C -0.156 4.156 8 O -0.342 6.342 9 C 0.516 3.484 10 O -0.536 6.536 11 C -0.130 4.130 12 C -0.187 4.187 13 C -0.098 4.098 14 C -0.204 4.204 15 C 0.067 3.933 16 C -0.493 4.493 17 H 0.089 0.911 18 C 0.031 3.969 19 N -0.826 5.826 20 Si 0.986 3.014 21 H -0.258 1.258 22 H -0.271 1.271 23 H -0.255 1.255 24 C -0.119 4.119 25 H 0.091 0.909 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.122 0.878 29 H 0.138 0.862 30 H 0.059 0.941 31 H 0.123 0.877 32 H 0.068 0.932 33 H 0.122 0.878 34 H 0.138 0.862 35 H 0.117 0.883 36 H 0.289 0.711 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.884 -9.086 -8.026 14.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.197 4.197 3 C 0.238 3.762 4 O -0.343 6.343 5 C -0.040 4.040 6 H 0.131 0.869 7 C -0.213 4.213 8 O -0.259 6.259 9 C 0.364 3.636 10 O -0.428 6.428 11 C -0.131 4.131 12 C -0.206 4.206 13 C -0.116 4.116 14 C -0.223 4.223 15 C 0.065 3.935 16 C -0.522 4.522 17 H 0.107 0.893 18 C -0.184 4.184 19 N -0.451 5.451 20 Si 0.806 3.194 21 H -0.183 1.183 22 H -0.195 1.195 23 H -0.178 1.178 24 C -0.138 4.138 25 H 0.110 0.890 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.140 0.860 29 H 0.156 0.844 30 H 0.078 0.922 31 H 0.142 0.858 32 H 0.087 0.913 33 H 0.140 0.860 34 H 0.156 0.844 35 H 0.135 0.865 36 H 0.100 0.900 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.092 -9.113 -7.880 14.513 hybrid contribution 0.936 -0.053 0.492 1.059 sum -7.156 -9.167 -7.388 13.777 Atomic orbital electron populations 1.21633 0.93365 1.03283 1.02012 1.22131 0.98384 0.91513 1.07657 1.25199 0.88010 0.93311 0.69721 1.90412 1.58841 1.49364 1.35690 1.23705 0.97732 0.82707 0.99865 0.86880 1.22104 1.01581 1.05705 0.91944 1.86728 1.38285 1.33361 1.67554 1.21696 0.78751 0.89526 0.73637 1.90715 1.49331 1.46193 1.56576 1.19086 0.98306 0.90127 1.05625 1.20907 0.99825 0.92833 1.07060 1.20934 0.96828 0.96271 0.97586 1.21505 0.95025 0.99361 1.06426 1.17906 0.93464 0.91240 0.90879 1.19865 1.05558 0.97196 1.29564 0.89339 1.26881 1.04627 0.93651 0.93285 1.69867 1.39413 1.06227 1.29621 0.85150 0.75796 0.78886 0.79606 1.18268 1.19541 1.17813 1.21464 0.95465 0.98708 0.98212 0.89049 0.93853 0.92825 0.86033 0.84410 0.92211 0.85840 0.91277 0.86027 0.84403 0.86480 0.90033 0.87258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.20 71.98 0.66 -1.49 16 2 C -0.16 -2.22 6.36 29.85 0.19 -2.03 16 3 C 0.36 9.07 6.42 29.10 0.19 9.25 16 4 O -0.47 -15.67 16.24 16.56 0.27 -15.40 16 5 C 0.02 0.44 2.91 29.85 0.09 0.53 16 6 H 0.11 3.15 7.16 -2.39 -0.02 3.13 16 7 C -0.16 -3.49 9.53 71.98 0.69 -2.80 16 8 O -0.34 -13.58 8.73 -50.00 -0.44 -14.02 16 9 C 0.52 23.92 7.87 70.34 0.55 24.47 16 10 O -0.54 -26.28 15.59 19.93 0.31 -25.97 16 11 C -0.13 -6.54 5.87 -20.14 -0.12 -6.66 16 12 C -0.19 -8.44 9.62 22.71 0.22 -8.23 16 13 C -0.10 -4.20 10.01 22.18 0.22 -3.98 16 14 C -0.20 -9.63 9.78 22.77 0.22 -9.41 16 15 C 0.07 3.64 5.57 -21.32 -0.12 3.52 16 16 C -0.49 -26.23 9.05 23.47 0.21 -26.02 16 17 H 0.09 4.41 7.90 -2.91 -0.02 4.39 16 18 C 0.03 1.56 5.14 85.25 0.44 2.00 16 19 N -0.83 -44.67 10.97 21.83 0.24 -44.43 16 20 Si 0.99 38.28 29.59 68.60 2.03 40.31 16 21 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 22 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 23 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 24 C -0.12 -6.58 8.23 23.02 0.19 -6.39 16 25 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.04 0.80 8.10 -2.39 -0.02 0.78 16 27 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 28 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.14 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.12 5.05 7.59 -2.91 -0.02 5.02 16 34 H 0.14 4.73 8.06 -2.91 -0.02 4.71 16 35 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 36 H 0.29 14.28 8.30 -92.71 -0.77 13.51 16 37 H 0.11 6.54 5.77 -2.91 -0.02 6.52 16 Total: -1.00 -69.42 325.90 7.12 -62.31 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 1.07 Total: 24.43 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 3.63 Total: -27.23 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.24 Total: -44.43 kcal Atomic # 8 Polarization: -55.53 SS G_CDS: 0.14 Total: -55.39 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -69.42 7.12 -62.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919310709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.517 kcal (2) G-P(sol) polarization free energy of solvation -69.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds