Wall clock time and date at job start Mon Mar 30 2020 01:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86797 * 120.00043 * 2 1 4 4 H 1.48499 * 109.47565 * 270.00060 * 3 2 1 5 5 H 1.48505 * 109.47214 * 30.00427 * 3 2 1 6 6 H 1.48505 * 109.47282 * 150.00313 * 3 2 1 7 7 C 1.40248 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99499 * 197.86706 * 7 2 1 9 9 C 1.41088 * 120.00253 * 17.86635 * 7 2 1 10 10 C 1.40899 * 120.09994 * 204.64771 * 9 7 2 11 11 C 1.36295 * 119.89744 * 180.02562 * 10 9 7 12 12 C 1.40062 * 120.10405 * 359.97438 * 11 10 9 13 13 C 1.47509 * 119.90173 * 179.97438 * 12 11 10 14 14 O 1.21501 * 119.99849 * 0.02562 * 13 12 11 15 15 O 1.34776 * 120.00061 * 180.02562 * 13 12 11 16 16 C 1.45196 * 117.00141 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47052 * 179.97438 * 16 15 13 18 18 O 1.42908 * 109.47168 * 65.00058 * 17 16 15 19 19 C 1.42895 * 113.99745 * 179.97438 * 18 17 16 20 20 C 1.53002 * 117.49518 * 218.61878 * 19 18 17 21 21 C 1.52998 * 60.00165 * 252.51291 * 20 19 18 22 22 C 1.40076 * 120.19726 * 0.25892 * 12 11 10 23 23 C 1.36305 * 120.09776 * 359.47658 * 22 12 11 24 24 H 0.97001 * 119.99984 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.04952 * 359.97438 * 10 9 7 26 26 H 1.07997 * 119.94803 * 179.97438 * 11 10 9 27 27 H 1.08997 * 109.47122 * 60.00410 * 16 15 13 28 28 H 1.08996 * 109.47074 * 299.99905 * 16 15 13 29 29 H 1.08995 * 109.47452 * 305.00381 * 17 16 15 30 30 H 1.08999 * 109.47228 * 185.00010 * 17 16 15 31 31 H 1.09000 * 115.55650 * 4.32575 * 19 18 17 32 32 H 1.09002 * 117.49856 * 0.02562 * 20 19 18 33 33 H 1.09003 * 117.49386 * 145.01869 * 20 19 18 34 34 H 1.09001 * 117.49690 * 252.50973 * 21 20 19 35 35 H 1.08994 * 117.51517 * 107.48353 * 21 20 19 36 36 H 1.07998 * 119.94476 * 179.74422 * 22 12 11 37 37 H 1.07999 * 120.04489 * 180.25956 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4878 2.0465 -1.4000 5 1 1.4378 2.6527 0.7001 6 1 3.5379 1.4401 0.7000 7 6 2.0075 -1.2146 -0.0005 8 1 3.0484 -1.2372 0.2864 9 6 1.3531 -2.4068 -0.3759 10 6 1.8267 -3.6495 0.0896 11 6 1.1917 -4.7988 -0.2760 12 6 0.0697 -4.7458 -1.1128 13 6 -0.6138 -5.9923 -1.5062 14 8 -0.2036 -7.0630 -1.1040 15 8 -1.6933 -5.9437 -2.3116 16 6 -2.3155 -7.2093 -2.6571 17 6 -3.5162 -6.9546 -3.5706 18 8 -3.0639 -6.4050 -4.8098 19 6 -4.1126 -6.1291 -5.7405 20 6 -3.8401 -6.4186 -7.2179 21 6 -3.9014 -4.9731 -6.7203 22 6 -0.4017 -3.5130 -1.5819 23 6 0.2238 -2.3582 -1.2170 24 1 -0.4850 0.8401 0.0004 25 1 2.6920 -3.6914 0.7345 26 1 1.5542 -5.7517 0.0800 27 1 -2.6505 -7.7095 -1.7485 28 1 -1.5927 -7.8404 -3.1740 29 1 -4.1969 -6.2528 -3.0889 30 1 -4.0359 -7.8942 -3.7581 31 1 -5.1245 -6.2984 -5.3724 32 1 -2.8611 -6.8199 -7.4799 33 1 -4.6729 -6.7787 -7.8221 34 1 -4.7745 -4.3821 -6.9972 35 1 -2.9628 -4.4229 -6.6548 36 1 -1.2647 -3.4772 -2.2303 37 1 -0.1429 -1.4079 -1.5759 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922563647.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:30 Heat of formation + Delta-G solvation = -93.146450 kcal Electronic energy + Delta-G solvation = -20169.091787 eV Core-core repulsion = 16877.027129 eV Total energy + Delta-G solvation = -3292.064658 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.58674 -38.54530 -37.42086 -35.83463 -34.83045 -33.93045 -30.60396 -29.64622 -29.48036 -26.13186 -23.20934 -22.51664 -22.06754 -21.89570 -20.92660 -19.93008 -17.54628 -17.42013 -16.94577 -16.26875 -15.65826 -15.43724 -15.17512 -14.82553 -14.14030 -14.00146 -13.40918 -13.26952 -12.82638 -12.62408 -12.31426 -12.08471 -11.86989 -11.67648 -11.59460 -11.37754 -11.31507 -11.13068 -10.96047 -10.69780 -10.59328 -10.12164 -10.10101 -9.59786 -9.42786 -9.35739 -9.19711 -7.73252 -7.62058 -7.08179 -4.66160 2.08256 2.87995 2.93886 2.96611 3.05229 3.35000 3.40564 3.66258 3.71390 3.71976 4.48672 4.65023 4.80956 4.83604 5.09334 5.18034 5.23123 5.31877 5.49233 5.52587 5.55391 5.71433 5.81389 6.02011 6.08682 6.23735 6.28951 6.75947 6.82026 7.01055 7.05339 7.13018 7.16063 7.43581 7.69404 7.80322 7.86102 8.02398 8.37337 8.58204 8.71466 8.78002 9.83107 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.018642 B = 0.003798 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.602932 B = 7370.744032 C = 8576.196084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.436 4.436 8 H 0.087 0.913 9 C 0.132 3.868 10 C -0.240 4.240 11 C -0.018 4.018 12 C -0.274 4.274 13 C 0.515 3.485 14 O -0.556 6.556 15 O -0.352 6.352 16 C 0.069 3.931 17 C 0.067 3.933 18 O -0.346 6.346 19 C 0.016 3.984 20 C -0.192 4.192 21 C -0.183 4.183 22 C -0.041 4.041 23 C -0.185 4.185 24 H 0.288 0.712 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.230 -5.264 -8.192 12.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.149 4.149 3 Si 0.739 3.261 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.463 4.463 8 H 0.105 0.895 9 C 0.128 3.872 10 C -0.259 4.259 11 C -0.037 4.037 12 C -0.276 4.276 13 C 0.367 3.633 14 O -0.450 6.450 15 O -0.270 6.270 16 C -0.006 4.006 17 C -0.010 4.010 18 O -0.265 6.265 19 C -0.042 4.042 20 C -0.229 4.229 21 C -0.220 4.220 22 C -0.060 4.060 23 C -0.204 4.204 24 H 0.100 0.900 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.127 0.873 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.159 -5.387 -8.104 12.699 hybrid contribution -0.023 0.506 0.091 0.514 sum -8.182 -4.881 -8.013 12.449 Atomic orbital electron populations 1.69743 1.07992 1.30298 1.30640 1.26153 0.94845 1.02051 0.91881 0.86168 0.80548 0.79600 0.79749 1.18817 1.19934 1.18208 1.19928 0.98483 0.91186 1.36688 0.89484 1.17846 0.90305 0.92174 0.86849 1.20682 1.04697 0.92464 1.08076 1.20345 0.92526 0.97386 0.93418 1.18226 1.04417 0.89323 1.15679 1.21585 0.77061 0.90190 0.74422 1.90685 1.66172 1.32175 1.55960 1.86653 1.43235 1.33847 1.63237 1.22841 0.94429 0.85662 0.97646 1.22644 0.95900 0.98223 0.84190 1.87964 1.30695 1.82787 1.25031 1.22643 0.91477 1.03350 0.86774 1.23390 1.03729 0.99201 0.96600 1.23334 1.04246 0.91670 1.02757 1.20662 0.97148 0.91899 0.96296 1.21011 1.00066 0.97071 1.02286 0.90024 0.88078 0.87975 0.90105 0.90964 0.91840 0.91275 0.87321 0.88213 0.88430 0.88234 0.87844 0.87986 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.27 10.95 55.56 0.61 -17.67 16 2 C 0.07 1.69 5.14 -17.31 -0.09 1.60 16 3 Si 0.92 17.09 29.60 -169.99 -5.03 12.06 16 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 5 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 6 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 7 C -0.44 -10.77 9.04 -37.75 -0.34 -11.11 16 8 H 0.09 2.04 7.91 -52.49 -0.42 1.62 16 9 C 0.13 3.37 5.58 -106.80 -0.60 2.78 16 10 C -0.24 -5.82 9.73 -39.28 -0.38 -6.20 16 11 C -0.02 -0.43 9.52 -39.60 -0.38 -0.81 16 12 C -0.27 -6.62 5.89 -104.75 -0.62 -7.24 16 13 C 0.51 11.77 7.89 34.51 0.27 12.04 16 14 O -0.56 -13.29 16.11 -19.26 -0.31 -13.60 16 15 O -0.35 -7.09 9.42 -43.48 -0.41 -7.50 16 16 C 0.07 1.06 5.86 37.16 0.22 1.28 16 17 C 0.07 0.82 6.20 37.16 0.23 1.05 16 18 O -0.35 -5.03 10.57 -38.79 -0.41 -5.44 16 19 C 0.02 0.18 6.44 -26.73 -0.17 0.00 16 20 C -0.19 -1.85 10.48 -26.73 -0.28 -2.13 16 21 C -0.18 -1.91 10.48 -26.73 -0.28 -2.19 16 22 C -0.04 -0.99 9.55 -39.59 -0.38 -1.37 16 23 C -0.19 -4.68 8.63 -39.27 -0.34 -5.02 16 24 H 0.29 6.17 8.29 -40.82 -0.34 5.84 16 25 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 26 H 0.10 2.31 7.63 -52.49 -0.40 1.91 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.11 0.94 7.93 -51.93 -0.41 0.53 16 32 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.10 2.28 7.59 -52.49 -0.40 1.88 16 37 H 0.12 3.09 6.15 -52.49 -0.32 2.77 16 LS Contribution 327.07 15.07 4.93 4.93 Total: -1.00 -28.89 327.07 -8.64 -37.53 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -4.89 Total: 6.99 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -3.13 Total: -17.30 kcal Atomic # 7 Polarization: -18.27 SS G_CDS: 0.61 Total: -17.67 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -1.13 Total: -26.54 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.89 -8.64 -37.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922563647.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.615 kcal (2) G-P(sol) polarization free energy of solvation -28.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds