Wall clock time and date at job start Mon Mar 30 2020 01:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86797 * 120.00043 * 2 1 4 4 H 1.48499 * 109.47565 * 270.00060 * 3 2 1 5 5 H 1.48505 * 109.47214 * 30.00427 * 3 2 1 6 6 H 1.48505 * 109.47282 * 150.00313 * 3 2 1 7 7 C 1.40248 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99499 * 197.86706 * 7 2 1 9 9 C 1.41088 * 120.00253 * 17.86635 * 7 2 1 10 10 C 1.40899 * 120.09994 * 204.64771 * 9 7 2 11 11 C 1.36295 * 119.89744 * 180.02562 * 10 9 7 12 12 C 1.40062 * 120.10405 * 359.97438 * 11 10 9 13 13 C 1.47509 * 119.90173 * 179.97438 * 12 11 10 14 14 O 1.21501 * 119.99849 * 0.02562 * 13 12 11 15 15 O 1.34776 * 120.00061 * 180.02562 * 13 12 11 16 16 C 1.45196 * 117.00141 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47052 * 179.97438 * 16 15 13 18 18 O 1.42908 * 109.47168 * 65.00058 * 17 16 15 19 19 C 1.42895 * 113.99745 * 179.97438 * 18 17 16 20 20 C 1.53002 * 117.49518 * 218.61878 * 19 18 17 21 21 C 1.52998 * 60.00165 * 252.51291 * 20 19 18 22 22 C 1.40076 * 120.19726 * 0.25892 * 12 11 10 23 23 C 1.36305 * 120.09776 * 359.47658 * 22 12 11 24 24 H 0.97001 * 119.99984 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.04952 * 359.97438 * 10 9 7 26 26 H 1.07997 * 119.94803 * 179.97438 * 11 10 9 27 27 H 1.08997 * 109.47122 * 60.00410 * 16 15 13 28 28 H 1.08996 * 109.47074 * 299.99905 * 16 15 13 29 29 H 1.08995 * 109.47452 * 305.00381 * 17 16 15 30 30 H 1.08999 * 109.47228 * 185.00010 * 17 16 15 31 31 H 1.09000 * 115.55650 * 4.32575 * 19 18 17 32 32 H 1.09002 * 117.49856 * 0.02562 * 20 19 18 33 33 H 1.09003 * 117.49386 * 145.01869 * 20 19 18 34 34 H 1.09001 * 117.49690 * 252.50973 * 21 20 19 35 35 H 1.08994 * 117.51517 * 107.48353 * 21 20 19 36 36 H 1.07998 * 119.94476 * 179.74422 * 22 12 11 37 37 H 1.07999 * 120.04489 * 180.25956 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4878 2.0465 -1.4000 5 1 1.4378 2.6527 0.7001 6 1 3.5379 1.4401 0.7000 7 6 2.0075 -1.2146 -0.0005 8 1 3.0484 -1.2372 0.2864 9 6 1.3531 -2.4068 -0.3759 10 6 1.8267 -3.6495 0.0896 11 6 1.1917 -4.7988 -0.2760 12 6 0.0697 -4.7458 -1.1128 13 6 -0.6138 -5.9923 -1.5062 14 8 -0.2036 -7.0630 -1.1040 15 8 -1.6933 -5.9437 -2.3116 16 6 -2.3155 -7.2093 -2.6571 17 6 -3.5162 -6.9546 -3.5706 18 8 -3.0639 -6.4050 -4.8098 19 6 -4.1126 -6.1291 -5.7405 20 6 -3.8401 -6.4186 -7.2179 21 6 -3.9014 -4.9731 -6.7203 22 6 -0.4017 -3.5130 -1.5819 23 6 0.2238 -2.3582 -1.2170 24 1 -0.4850 0.8401 0.0004 25 1 2.6920 -3.6914 0.7345 26 1 1.5542 -5.7517 0.0800 27 1 -2.6505 -7.7095 -1.7485 28 1 -1.5927 -7.8404 -3.1740 29 1 -4.1969 -6.2528 -3.0889 30 1 -4.0359 -7.8942 -3.7581 31 1 -5.1245 -6.2984 -5.3724 32 1 -2.8611 -6.8199 -7.4799 33 1 -4.6729 -6.7787 -7.8221 34 1 -4.7745 -4.3821 -6.9972 35 1 -2.9628 -4.4229 -6.6548 36 1 -1.2647 -3.4772 -2.2303 37 1 -0.1429 -1.4079 -1.5759 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922563647.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:30 Heat of formation + Delta-G solvation = -107.446257 kcal Electronic energy + Delta-G solvation = -20169.711873 eV Core-core repulsion = 16877.027129 eV Total energy + Delta-G solvation = -3292.684745 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.25888 -39.57356 -39.18093 -37.36604 -35.87417 -35.74977 -32.33418 -31.38457 -30.95895 -27.94603 -24.69335 -23.38165 -23.28406 -22.89242 -22.81043 -21.68213 -19.40817 -18.66763 -18.38733 -17.85943 -17.18050 -16.99451 -16.18088 -15.97856 -15.77480 -15.26007 -15.09197 -14.83772 -14.36778 -14.03527 -13.91947 -13.73195 -13.36657 -13.21090 -12.88384 -12.67415 -12.54198 -12.41785 -12.38570 -12.19188 -11.80712 -11.63720 -11.42966 -11.33668 -11.23625 -11.13226 -10.08561 -9.64088 -9.53864 -8.84991 -6.55637 0.23790 1.12832 1.37013 1.41984 1.54827 1.88412 1.90770 2.15298 2.46761 2.67914 2.92232 3.62078 3.81640 3.89779 4.00042 4.08259 4.12600 4.21985 4.35231 4.40541 4.41466 4.45830 4.66931 4.72812 4.76308 4.91961 4.98216 5.01953 5.11459 5.22202 5.24113 5.42874 5.55309 5.81126 5.90624 5.96092 6.14261 6.26512 6.48697 6.69713 6.81607 7.02501 8.09875 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.018642 B = 0.003798 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.602932 B = 7370.744032 C = 8576.196084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.035 3.965 3 Si 0.992 3.008 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.253 1.253 7 C -0.459 4.459 8 H 0.094 0.906 9 C 0.105 3.895 10 C -0.250 4.250 11 C -0.023 4.023 12 C -0.293 4.293 13 C 0.519 3.481 14 O -0.571 6.571 15 O -0.359 6.359 16 C 0.059 3.941 17 C 0.071 3.929 18 O -0.384 6.384 19 C 0.001 3.999 20 C -0.181 4.181 21 C -0.193 4.193 22 C -0.039 4.039 23 C -0.203 4.203 24 H 0.300 0.700 25 H 0.115 0.885 26 H 0.112 0.888 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.137 0.863 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.170 -4.865 -8.674 13.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.185 4.185 3 Si 0.812 3.188 4 H -0.184 1.184 5 H -0.188 1.188 6 H -0.177 1.177 7 C -0.485 4.485 8 H 0.112 0.888 9 C 0.102 3.898 10 C -0.269 4.269 11 C -0.041 4.041 12 C -0.295 4.295 13 C 0.371 3.629 14 O -0.467 6.467 15 O -0.276 6.276 16 C -0.015 4.015 17 C -0.005 4.005 18 O -0.303 6.303 19 C -0.056 4.056 20 C -0.218 4.218 21 C -0.231 4.231 22 C -0.058 4.058 23 C -0.222 4.222 24 H 0.111 0.889 25 H 0.133 0.867 26 H 0.130 0.870 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.127 0.873 31 H 0.155 0.845 32 H 0.105 0.895 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.123 -5.008 -8.597 13.499 hybrid contribution 0.196 0.342 0.205 0.444 sum -8.927 -4.666 -8.392 13.111 Atomic orbital electron populations 1.69766 1.09490 1.32021 1.30056 1.27057 0.95555 1.05189 0.90712 0.85032 0.79151 0.74771 0.79883 1.18386 1.18826 1.17689 1.20260 0.98993 0.91977 1.37275 0.88824 1.18190 0.90894 0.93226 0.87513 1.20876 1.05325 0.92278 1.08463 1.20508 0.92542 0.97732 0.93329 1.18478 1.04919 0.90128 1.16021 1.21334 0.77598 0.89389 0.74546 1.90661 1.66862 1.32482 1.56710 1.86621 1.42175 1.36635 1.62185 1.23295 0.95245 0.83846 0.99117 1.22745 0.94278 1.00338 0.83106 1.87904 1.32944 1.83336 1.26123 1.23008 0.91956 1.03825 0.86836 1.23453 1.04142 0.98237 0.96015 1.23401 1.04082 0.92229 1.03354 1.20753 0.97241 0.91668 0.96120 1.21008 1.00853 0.97104 1.03234 0.88882 0.86678 0.86993 0.88544 0.91543 0.91088 0.87294 0.84522 0.89484 0.85635 0.86062 0.90198 0.86912 0.86834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.76 10.95 21.88 0.24 -37.52 16 2 C 0.04 1.61 5.14 85.36 0.44 2.05 16 3 Si 0.99 34.06 29.60 68.60 2.03 36.09 16 4 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 5 H -0.26 -8.56 7.11 99.48 0.71 -7.86 16 6 H -0.25 -8.45 7.11 99.48 0.71 -7.74 16 7 C -0.46 -22.79 9.04 23.46 0.21 -22.58 16 8 H 0.09 4.38 7.91 -2.91 -0.02 4.36 16 9 C 0.11 5.49 5.58 -21.28 -0.12 5.37 16 10 C -0.25 -12.32 9.73 22.47 0.22 -12.10 16 11 C -0.02 -1.09 9.52 22.26 0.21 -0.88 16 12 C -0.29 -14.37 5.89 -19.94 -0.12 -14.49 16 13 C 0.52 23.83 7.89 70.27 0.55 24.39 16 14 O -0.57 -27.34 16.11 19.83 0.32 -27.02 16 15 O -0.36 -14.41 9.42 -54.21 -0.51 -14.92 16 16 C 0.06 1.75 5.86 71.98 0.42 2.17 16 17 C 0.07 1.61 6.20 71.98 0.45 2.06 16 18 O -0.38 -10.74 10.57 -145.57 -1.54 -12.28 16 19 C 0.00 0.02 6.44 30.60 0.20 0.22 16 20 C -0.18 -3.17 10.48 30.59 0.32 -2.85 16 21 C -0.19 -3.84 10.48 30.60 0.32 -3.52 16 22 C -0.04 -1.91 9.55 22.26 0.21 -1.70 16 23 C -0.20 -10.50 8.63 22.47 0.19 -10.30 16 24 H 0.30 12.66 8.29 -92.71 -0.77 11.89 16 25 H 0.12 5.17 8.06 -2.91 -0.02 5.15 16 26 H 0.11 5.10 7.63 -2.91 -0.02 5.08 16 27 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.14 1.93 7.93 -2.39 -0.02 1.91 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.11 5.13 7.59 -2.91 -0.02 5.11 16 37 H 0.11 5.94 6.15 -2.91 -0.02 5.93 16 Total: -1.00 -62.60 327.07 5.12 -57.48 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 1.07 Total: 30.34 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: 3.51 Total: -32.16 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.24 Total: -37.52 kcal Atomic # 8 Polarization: -52.50 SS G_CDS: -1.73 Total: -54.23 kcal Atomic # 14 Polarization: 34.06 SS G_CDS: 2.03 Total: 36.09 kcal Total: -62.60 5.12 -57.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922563647.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.969 kcal (2) G-P(sol) polarization free energy of solvation -62.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds