Wall clock time and date at job start Mon Mar 30 2020 01:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21218 * 120.00177 * 2 1 4 4 C 1.47413 * 119.99908 * 179.97438 * 2 1 3 5 5 C 1.39819 * 120.02121 * 353.96487 * 4 2 1 6 6 C 1.37751 * 119.97439 * 180.02562 * 5 4 2 7 7 C 1.39634 * 120.02378 * 0.02562 * 6 5 4 8 8 C 1.47965 * 119.97732 * 179.97438 * 7 6 5 9 9 O 1.21438 * 120.00004 * 179.97438 * 8 7 6 10 10 O 1.34682 * 119.99906 * 0.02562 * 8 7 6 11 11 C 1.45200 * 116.99925 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47315 * 179.97438 * 11 10 8 13 13 C 1.50691 * 109.47381 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00121 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00486 * 180.02562 * 13 12 11 16 16 N 1.31523 * 119.99555 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00480 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46827 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47367 * 119.99973 * 17 15 13 20 20 H 1.48508 * 109.46700 * 240.00137 * 17 15 13 21 21 C 1.39596 * 120.04217 * 0.25338 * 7 6 5 22 22 C 1.37782 * 120.02427 * 359.49040 * 21 7 6 23 23 C 1.50703 * 120.01225 * 180.23830 * 22 21 7 24 24 H 1.09001 * 109.47381 * 240.00049 * 1 2 3 25 25 H 1.08996 * 109.47587 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46703 * 120.00250 * 1 2 3 27 27 H 1.08000 * 120.01312 * 359.97438 * 5 4 2 28 28 H 1.07998 * 119.99195 * 179.97438 * 6 5 4 29 29 H 1.09001 * 109.46924 * 299.99635 * 11 10 8 30 30 H 1.08998 * 109.47199 * 60.00125 * 11 10 8 31 31 H 1.09000 * 109.46608 * 300.00149 * 12 11 10 32 32 H 1.08996 * 109.46924 * 59.99572 * 12 11 10 33 33 H 0.97000 * 119.99379 * 179.97438 * 16 15 13 34 34 H 1.08008 * 119.98416 * 179.74871 * 21 7 6 35 35 H 1.09002 * 109.46804 * 263.59232 * 23 22 21 36 36 H 1.08995 * 109.47231 * 23.58827 * 23 22 21 37 37 H 1.09005 * 109.47392 * 143.59238 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0498 0.0000 4 6 2.2440 -1.2766 0.0006 5 6 1.5512 -2.4844 0.1284 6 6 2.2409 -3.6767 0.1293 7 6 3.6316 -3.6795 0.0032 8 6 4.3715 -4.9609 0.0050 9 8 5.5808 -4.9639 -0.1051 10 8 3.7036 -6.1240 0.1276 11 6 4.4942 -7.3419 0.1219 12 6 3.5689 -8.5513 0.2708 13 6 4.3895 -9.8152 0.2656 14 1 5.4635 -9.7614 0.1655 15 6 3.7691 -11.0405 0.3874 16 7 2.4611 -11.1061 0.5087 17 14 4.7863 -12.6072 0.3816 18 1 6.2235 -12.2637 0.2341 19 1 4.5797 -13.3364 1.6586 20 1 4.3643 -13.4671 -0.7533 21 6 4.3247 -2.4740 -0.1186 22 6 3.6362 -1.2805 -0.1250 23 6 4.3843 0.0205 -0.2620 24 1 -0.3634 -0.5138 0.8900 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 0.4757 -2.4823 0.2272 28 1 1.7061 -4.6097 0.2285 29 1 5.0408 -7.4158 -0.8182 30 1 5.2002 -7.3207 0.9521 31 1 3.0226 -8.4771 1.2111 32 1 2.8626 -8.5727 -0.5590 33 1 2.0247 -11.9682 0.5940 34 1 5.4007 -2.4770 -0.2120 35 1 4.5536 0.4480 0.7263 36 1 5.3427 -0.1609 -0.7483 37 1 3.7977 0.7156 -0.8628 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923380652.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:12 Heat of formation + Delta-G solvation = -129.314914 kcal Electronic energy + Delta-G solvation = -19994.169924 eV Core-core repulsion = 16700.536883 eV Total energy + Delta-G solvation = -3293.633041 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.81843 -41.01770 -39.16098 -37.72081 -35.47326 -34.03619 -33.35838 -32.24467 -30.45771 -28.06703 -27.37160 -25.87746 -23.17141 -22.94666 -22.18203 -20.87829 -19.05338 -18.32224 -17.98913 -17.60362 -17.59688 -16.71409 -16.52288 -16.18853 -15.55488 -15.21071 -15.16209 -14.81976 -14.40973 -14.38833 -14.25151 -13.74609 -13.32098 -13.24160 -13.05912 -13.01163 -12.98663 -12.81743 -12.63315 -12.60496 -12.18786 -11.97675 -11.58947 -11.53227 -11.39279 -10.62055 -10.55957 -10.24609 -9.90815 -8.27841 -6.40526 -0.90001 0.20317 0.87818 1.40714 1.41484 1.52707 1.60022 1.63451 2.39463 2.62998 2.99105 3.06906 3.52004 3.62191 3.71290 4.05140 4.08142 4.19509 4.19998 4.22768 4.48779 4.54226 4.66709 4.70904 4.73744 4.75823 4.81337 4.99170 5.12165 5.15768 5.21836 5.23868 5.40515 5.46016 5.47181 5.64942 5.72386 6.05818 6.49424 6.57720 6.72970 7.29201 8.84880 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.038969 B = 0.002934 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.343561 B = 9539.660250 C =10225.522411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.394 3.606 3 O -0.479 6.479 4 C -0.151 4.151 5 C -0.061 4.061 6 C -0.085 4.085 7 C -0.102 4.102 8 C 0.497 3.503 9 O -0.537 6.537 10 O -0.353 6.353 11 C 0.090 3.910 12 C 0.032 3.968 13 C -0.550 4.550 14 H 0.063 0.937 15 C 0.008 3.992 16 N -0.925 5.925 17 Si 0.972 3.028 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.080 4.080 22 C -0.048 4.048 23 C -0.117 4.117 24 H 0.119 0.881 25 H 0.087 0.913 26 H 0.117 0.883 27 H 0.185 0.815 28 H 0.152 0.848 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.268 0.732 34 H 0.138 0.862 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.565 21.959 -1.075 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.275 3.725 3 O -0.357 6.357 4 C -0.152 4.152 5 C -0.079 4.079 6 C -0.103 4.103 7 C -0.103 4.103 8 C 0.343 3.657 9 O -0.428 6.428 10 O -0.269 6.269 11 C 0.017 3.983 12 C -0.005 4.005 13 C -0.588 4.588 14 H 0.082 0.918 15 C -0.191 4.191 16 N -0.564 5.564 17 Si 0.796 3.204 18 H -0.188 1.188 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.098 4.098 22 C -0.049 4.049 23 C -0.173 4.173 24 H 0.137 0.863 25 H 0.106 0.894 26 H 0.135 0.865 27 H 0.202 0.798 28 H 0.169 0.831 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.077 0.923 34 H 0.156 0.844 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.046 22.343 -1.086 22.931 hybrid contribution 0.826 -1.345 0.025 1.579 sum -4.220 20.997 -1.061 21.444 Atomic orbital electron populations 1.22321 0.89908 1.06235 1.06810 1.23051 0.93447 0.86215 0.69802 1.90499 1.72572 1.35249 1.37397 1.20941 0.93705 0.96464 1.04115 1.21781 1.02312 0.89102 0.94706 1.21688 0.91874 1.00768 0.95980 1.19416 0.95049 0.89304 1.06564 1.21841 0.85992 0.85563 0.72310 1.90772 1.16362 1.88609 1.47101 1.86539 1.42552 1.15390 1.82446 1.23254 0.94061 0.79865 1.01139 1.18979 0.94775 0.89851 0.96893 1.21389 0.94104 0.91481 1.51834 0.91845 1.25926 0.96215 1.02906 0.94091 1.70091 1.09945 1.26541 1.49813 0.85295 0.78861 0.78206 0.78056 1.18798 1.20028 1.20024 1.21171 1.00956 0.90016 0.97671 1.20316 0.93485 0.95512 0.95544 1.21067 0.99777 0.92982 1.03450 0.86310 0.89362 0.86518 0.79804 0.83057 0.92078 0.92105 0.97197 0.97176 0.92294 0.84449 0.90324 0.90984 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.23 9.01 71.24 0.64 -0.59 16 2 C 0.39 5.94 7.16 28.10 0.20 6.15 16 3 O -0.48 -10.17 14.05 -2.84 -0.04 -10.21 16 4 C -0.15 -2.64 5.87 -20.10 -0.12 -2.76 16 5 C -0.06 -0.91 9.45 22.54 0.21 -0.70 16 6 C -0.09 -1.85 9.60 22.49 0.22 -1.63 16 7 C -0.10 -2.85 5.88 -20.03 -0.12 -2.97 16 8 C 0.50 18.03 7.90 70.40 0.56 18.58 16 9 O -0.54 -21.98 16.12 20.04 0.32 -21.66 16 10 O -0.35 -14.09 9.46 -55.91 -0.53 -14.61 16 11 C 0.09 4.02 5.41 71.98 0.39 4.41 16 12 C 0.03 1.70 5.35 29.85 0.16 1.86 16 13 C -0.55 -30.91 9.11 25.60 0.23 -30.68 16 14 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 15 C 0.01 0.44 5.46 84.65 0.46 0.90 16 16 N -0.92 -54.44 13.29 21.45 0.28 -54.16 16 17 Si 0.97 43.22 29.54 68.60 2.03 45.25 16 18 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 21 C -0.08 -2.00 9.20 22.49 0.21 -1.79 16 22 C -0.05 -1.03 5.91 -19.60 -0.12 -1.14 16 23 C -0.12 -2.21 8.72 71.24 0.62 -1.59 16 24 H 0.12 0.27 7.90 -2.39 -0.02 0.25 16 25 H 0.09 0.58 8.12 -2.39 -0.02 0.56 16 26 H 0.12 0.31 8.14 -2.38 -0.02 0.29 16 27 H 0.18 1.10 6.97 -2.91 -0.02 1.08 16 28 H 0.15 3.23 7.60 -2.91 -0.02 3.21 16 29 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 34 H 0.14 3.48 7.63 -2.91 -0.02 3.46 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.07 1.20 8.04 -2.39 -0.02 1.18 16 37 H 0.09 1.75 5.85 -2.38 -0.01 1.74 16 Total: -1.00 -69.95 324.82 6.69 -63.26 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: 1.08 Total: 4.07 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 3.55 Total: -11.94 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.28 Total: -54.16 kcal Atomic # 8 Polarization: -46.24 SS G_CDS: -0.25 Total: -46.48 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -69.95 6.69 -63.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923380652.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.050 kcal (2) G-P(sol) polarization free energy of solvation -69.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds