Wall clock time and date at job start Mon Mar 30 2020 01:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86791 * 120.00357 * 2 1 4 4 H 1.48504 * 109.47375 * 269.99895 * 3 2 1 5 5 H 1.48499 * 109.47234 * 30.00234 * 3 2 1 6 6 H 1.48505 * 109.47218 * 149.99923 * 3 2 1 7 7 C 1.37880 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99796 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00228 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47307 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47134 * 179.97438 * 10 9 7 12 12 O 1.45199 * 109.46957 * 179.97438 * 11 10 9 13 13 C 1.34756 * 116.99849 * 179.97438 * 12 11 10 14 14 O 1.21516 * 119.99852 * 0.02562 * 13 12 11 15 15 C 1.47392 * 119.99803 * 180.02562 * 13 12 11 16 16 C 1.39588 * 120.06207 * 359.97438 * 15 13 12 17 17 C 1.37765 * 120.18043 * 179.97438 * 16 15 13 18 18 C 1.38666 * 119.98315 * 0.20823 * 17 16 15 19 19 C 1.37666 * 120.33179 * 0.02562 * 18 17 16 20 20 C 1.38874 * 120.87157 * 359.59107 * 19 18 17 21 21 O 1.35846 * 111.30078 * 181.06563 * 20 19 18 22 22 C 1.43786 * 109.23434 * 340.64699 * 21 20 19 23 23 C 1.51670 * 132.13254 * 179.09857 * 19 18 17 24 24 H 0.97004 * 119.99346 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47477 * 59.99585 * 9 7 2 26 26 H 1.09004 * 109.47117 * 299.99567 * 9 7 2 27 27 H 1.08994 * 109.46756 * 59.99661 * 10 9 7 28 28 H 1.09004 * 109.46713 * 299.99857 * 10 9 7 29 29 H 1.09004 * 109.46662 * 60.00036 * 11 10 9 30 30 H 1.08998 * 109.47087 * 300.00540 * 11 10 9 31 31 H 1.08002 * 119.91385 * 0.02562 * 16 15 13 32 32 H 1.08001 * 120.00860 * 180.23522 * 17 16 15 33 33 H 1.08001 * 119.83243 * 180.02562 * 18 17 16 34 34 H 1.08999 * 110.75182 * 269.55650 * 22 21 20 35 35 H 1.08996 * 110.90844 * 146.26964 * 22 21 20 36 36 H 1.09007 * 110.94322 * 313.71172 * 23 19 18 37 37 H 1.09001 * 110.94595 * 77.36430 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6368 -0.0001 11 6 5.5514 -2.6369 -0.0001 12 8 6.0353 -4.0058 0.0004 13 6 7.3713 -4.1825 -0.0002 14 8 8.1115 -3.2188 -0.0005 15 6 7.9345 -5.5445 -0.0003 16 6 7.0853 -6.6524 0.0007 17 6 7.6091 -7.9266 0.0001 18 6 8.9835 -8.1108 0.0028 19 6 9.8304 -7.0255 0.0067 20 6 9.3291 -5.7304 -0.0005 21 8 10.3313 -4.8135 -0.0185 22 6 11.5496 -5.4345 0.4257 23 6 11.3430 -6.9153 0.0280 24 1 -0.4849 0.8401 -0.0004 25 1 3.8746 -0.6810 0.8904 26 1 3.8752 -0.6799 -0.8895 27 1 3.6583 -3.1503 -0.8903 28 1 3.6577 -3.1507 0.8897 29 1 5.9148 -2.1231 0.8899 30 1 5.9148 -2.1229 -0.8900 31 1 6.0147 -6.5103 0.0011 32 1 6.9495 -8.7817 -0.0030 33 1 9.3915 -9.1108 0.0019 34 1 11.6618 -5.3364 1.5054 35 1 12.4119 -5.0127 -0.0906 36 1 11.7718 -7.5828 0.7755 37 1 11.7623 -7.1168 -0.9577 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923882847.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:23 Heat of formation + Delta-G solvation = -100.718428 kcal Electronic energy + Delta-G solvation = -20227.805031 eV Core-core repulsion = 16935.412027 eV Total energy + Delta-G solvation = -3292.393004 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.55691 -39.91513 -37.67132 -36.35167 -34.03837 -33.13407 -31.81878 -30.67384 -29.64905 -27.57595 -24.76451 -23.59675 -22.59792 -22.26614 -20.68931 -20.16061 -17.75448 -17.54017 -17.13621 -16.72605 -16.56216 -16.16922 -15.90133 -15.19998 -14.27904 -14.16247 -13.93119 -13.64665 -13.47005 -13.10232 -12.89413 -12.72166 -12.23418 -12.17883 -12.17486 -11.84425 -11.58780 -11.23037 -11.02014 -10.91835 -10.45889 -10.36899 -9.96314 -9.76700 -9.69526 -9.30410 -9.22603 -8.54808 -8.52618 -6.05313 -4.04083 0.48859 0.96670 2.54028 2.82817 2.89247 3.31939 3.39346 3.43489 3.47624 3.96761 4.15391 4.45066 4.46882 4.59873 4.67098 4.79811 4.99111 5.08697 5.12662 5.26980 5.28294 5.32399 5.51765 5.53737 5.56701 5.83147 5.88175 5.93939 6.05860 6.23521 6.39531 6.42939 6.70773 6.76871 6.84726 7.24284 7.35607 7.74908 7.96952 8.51759 8.99077 9.56467 11.07885 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.036704 B = 0.003099 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.666494 B = 9031.553082 C = 9750.927526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.068 3.932 12 O -0.354 6.354 13 C 0.501 3.499 14 O -0.499 6.499 15 C -0.143 4.143 16 C -0.027 4.027 17 C -0.162 4.162 18 C -0.038 4.038 19 C -0.194 4.194 20 C 0.171 3.829 21 O -0.278 6.278 22 C 0.045 3.955 23 C -0.107 4.107 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.151 0.849 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.465 -18.371 0.686 29.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.139 4.139 11 C -0.006 4.006 12 O -0.270 6.270 13 C 0.345 3.655 14 O -0.388 6.388 15 C -0.145 4.145 16 C -0.045 4.045 17 C -0.180 4.180 18 C -0.056 4.056 19 C -0.195 4.195 20 C 0.124 3.876 21 O -0.190 6.190 22 C -0.030 4.030 23 C -0.144 4.144 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.169 0.831 32 H 0.156 0.844 33 H 0.149 0.851 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.112 0.888 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 23.510 -17.669 0.631 29.416 hybrid contribution 0.494 0.959 0.003 1.079 sum 24.004 -16.709 0.635 29.254 Atomic orbital electron populations 1.69911 1.06283 1.26954 1.50943 1.25014 0.94758 0.99181 0.94474 0.86784 0.80399 0.83561 0.78612 1.20200 1.21304 1.18945 1.21060 0.89054 0.94660 1.51111 0.90784 1.19524 0.97495 0.91124 0.96699 1.21558 0.88719 1.00769 1.02806 1.23494 0.96949 0.77960 1.02148 1.86528 1.22544 1.34273 1.83701 1.20892 0.81509 0.89323 0.73732 1.90872 1.60507 1.42159 1.45228 1.18503 0.89253 0.91958 1.14787 1.21377 1.00502 0.90703 0.91941 1.21060 0.94714 0.97304 1.04946 1.20552 0.92753 0.97806 0.94483 1.20752 0.95844 0.93041 1.09816 1.19472 0.88544 0.88077 0.91547 1.87021 1.16753 1.34953 1.80243 1.23960 0.86708 0.91459 1.00895 1.21806 0.91614 0.97279 1.03722 0.92665 0.96269 0.96692 0.91519 0.91492 0.91523 0.91506 0.83148 0.84398 0.85146 0.90145 0.87181 0.88756 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.52 -14.97 9.66 -34.44 -0.33 -15.30 16 8 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 10 C -0.10 -2.05 5.53 -26.73 -0.15 -2.20 16 11 C 0.07 1.24 5.48 37.16 0.20 1.45 16 12 O -0.35 -6.09 9.45 -40.65 -0.38 -6.48 16 13 C 0.50 8.60 7.89 34.46 0.27 8.87 16 14 O -0.50 -9.92 15.66 -24.89 -0.39 -10.31 16 15 C -0.14 -1.99 5.89 -104.74 -0.62 -2.61 16 16 C -0.03 -0.29 9.59 -39.25 -0.38 -0.67 16 17 C -0.16 -1.33 10.05 -39.60 -0.40 -1.73 16 18 C -0.04 -0.29 10.02 -39.63 -0.40 -0.69 16 19 C -0.19 -1.82 6.27 -104.12 -0.65 -2.47 16 20 C 0.17 2.21 6.73 -38.42 -0.26 1.95 16 21 O -0.28 -3.72 10.13 -34.85 -0.35 -4.08 16 22 C 0.04 0.35 8.01 38.06 0.30 0.65 16 23 C -0.11 -0.68 7.12 -26.51 -0.19 -0.86 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 26 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.15 1.51 7.59 -52.49 -0.40 1.11 16 32 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 319.05 15.07 4.81 4.81 Total: -1.00 -34.63 319.05 -7.99 -42.62 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: -4.98 Total: -4.53 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -2.80 Total: -12.12 kcal Atomic # 7 Polarization: -27.99 SS G_CDS: 0.77 Total: -27.21 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -1.13 Total: -20.87 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.63 -7.99 -42.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923882847.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.100 kcal (2) G-P(sol) polarization free energy of solvation -34.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds