Wall clock time and date at job start Mon Mar 30 2020 01:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86791 * 120.00357 * 2 1 4 4 H 1.48504 * 109.47375 * 269.99895 * 3 2 1 5 5 H 1.48499 * 109.47234 * 30.00234 * 3 2 1 6 6 H 1.48505 * 109.47218 * 149.99923 * 3 2 1 7 7 C 1.37880 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99796 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00228 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47307 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47134 * 179.97438 * 10 9 7 12 12 O 1.45199 * 109.46957 * 179.97438 * 11 10 9 13 13 C 1.34756 * 116.99849 * 179.97438 * 12 11 10 14 14 O 1.21516 * 119.99852 * 0.02562 * 13 12 11 15 15 C 1.47392 * 119.99803 * 180.02562 * 13 12 11 16 16 C 1.39588 * 120.06207 * 359.97438 * 15 13 12 17 17 C 1.37765 * 120.18043 * 179.97438 * 16 15 13 18 18 C 1.38666 * 119.98315 * 0.20823 * 17 16 15 19 19 C 1.37666 * 120.33179 * 0.02562 * 18 17 16 20 20 C 1.38874 * 120.87157 * 359.59107 * 19 18 17 21 21 O 1.35846 * 111.30078 * 181.06563 * 20 19 18 22 22 C 1.43786 * 109.23434 * 340.64699 * 21 20 19 23 23 C 1.51670 * 132.13254 * 179.09857 * 19 18 17 24 24 H 0.97004 * 119.99346 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47477 * 59.99585 * 9 7 2 26 26 H 1.09004 * 109.47117 * 299.99567 * 9 7 2 27 27 H 1.08994 * 109.46756 * 59.99661 * 10 9 7 28 28 H 1.09004 * 109.46713 * 299.99857 * 10 9 7 29 29 H 1.09004 * 109.46662 * 60.00036 * 11 10 9 30 30 H 1.08998 * 109.47087 * 300.00540 * 11 10 9 31 31 H 1.08002 * 119.91385 * 0.02562 * 16 15 13 32 32 H 1.08001 * 120.00860 * 180.23522 * 17 16 15 33 33 H 1.08001 * 119.83243 * 180.02562 * 18 17 16 34 34 H 1.08999 * 110.75182 * 269.55650 * 22 21 20 35 35 H 1.08996 * 110.90844 * 146.26964 * 22 21 20 36 36 H 1.09007 * 110.94322 * 313.71172 * 23 19 18 37 37 H 1.09001 * 110.94595 * 77.36430 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6368 -0.0001 11 6 5.5514 -2.6369 -0.0001 12 8 6.0353 -4.0058 0.0004 13 6 7.3713 -4.1825 -0.0002 14 8 8.1115 -3.2188 -0.0005 15 6 7.9345 -5.5445 -0.0003 16 6 7.0853 -6.6524 0.0007 17 6 7.6091 -7.9266 0.0001 18 6 8.9835 -8.1108 0.0028 19 6 9.8304 -7.0255 0.0067 20 6 9.3291 -5.7304 -0.0005 21 8 10.3313 -4.8135 -0.0185 22 6 11.5496 -5.4345 0.4257 23 6 11.3430 -6.9153 0.0280 24 1 -0.4849 0.8401 -0.0004 25 1 3.8746 -0.6810 0.8904 26 1 3.8752 -0.6799 -0.8895 27 1 3.6583 -3.1503 -0.8903 28 1 3.6577 -3.1507 0.8897 29 1 5.9148 -2.1231 0.8899 30 1 5.9148 -2.1229 -0.8900 31 1 6.0147 -6.5103 0.0011 32 1 6.9495 -8.7817 -0.0030 33 1 9.3915 -9.1108 0.0019 34 1 11.6618 -5.3364 1.5054 35 1 12.4119 -5.0127 -0.0906 36 1 11.7718 -7.5828 0.7755 37 1 11.7623 -7.1168 -0.9577 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923882847.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:23 Heat of formation + Delta-G solvation = -121.431190 kcal Electronic energy + Delta-G solvation = -20228.703204 eV Core-core repulsion = 16935.412027 eV Total energy + Delta-G solvation = -3293.291177 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.35705 -41.19345 -38.45274 -37.77985 -35.94323 -34.03700 -33.69603 -31.49250 -30.35117 -29.38356 -25.93786 -24.66180 -23.84880 -23.00357 -22.12683 -21.66563 -19.04081 -18.68824 -18.49545 -17.96888 -17.73698 -17.19351 -16.91853 -16.29225 -15.90325 -15.73737 -14.88898 -14.82933 -14.49241 -14.22805 -14.05221 -13.98148 -13.75909 -13.49073 -12.91494 -12.87265 -12.73190 -12.59404 -12.29546 -12.12019 -12.02787 -11.85655 -11.78281 -11.46196 -11.41578 -11.36588 -10.78784 -10.07848 -9.27119 -8.31570 -6.36349 -0.38889 0.23427 1.35625 1.36961 1.44106 1.48925 1.56028 2.19003 2.34494 2.64332 3.03486 3.38464 3.50427 3.63972 3.90762 3.96248 4.00314 4.12537 4.17614 4.29065 4.31801 4.37096 4.54713 4.70673 4.71150 4.78693 4.86492 4.93776 4.94988 5.11165 5.20483 5.29941 5.36205 5.45890 5.46487 5.58671 5.60498 6.03931 6.24480 6.63806 6.71424 7.28076 8.84951 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.036704 B = 0.003099 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.666494 B = 9031.553082 C = 9750.927526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.249 1.249 7 C -0.533 4.533 8 H 0.038 0.962 9 C -0.009 4.009 10 C -0.090 4.090 11 C 0.075 3.925 12 O -0.353 6.353 13 C 0.498 3.502 14 O -0.537 6.537 15 C -0.179 4.179 16 C -0.037 4.037 17 C -0.152 4.152 18 C -0.024 4.024 19 C -0.193 4.193 20 C 0.144 3.856 21 O -0.318 6.318 22 C 0.032 3.968 23 C -0.097 4.097 24 H 0.268 0.732 25 H 0.024 0.976 26 H 0.023 0.977 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.150 0.850 32 H 0.172 0.828 33 H 0.173 0.827 34 H 0.087 0.913 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.081 -20.249 0.735 33.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.172 1.172 7 C -0.571 4.571 8 H 0.056 0.944 9 C -0.047 4.047 10 C -0.127 4.127 11 C 0.002 3.998 12 O -0.269 6.269 13 C 0.345 3.655 14 O -0.428 6.428 15 C -0.181 4.181 16 C -0.055 4.055 17 C -0.170 4.170 18 C -0.042 4.042 19 C -0.194 4.194 20 C 0.097 3.903 21 O -0.232 6.232 22 C -0.041 4.041 23 C -0.134 4.134 24 H 0.077 0.923 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.168 0.832 32 H 0.189 0.811 33 H 0.191 0.809 34 H 0.105 0.895 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 26.139 -19.580 0.682 32.666 hybrid contribution -0.311 1.374 -0.006 1.409 sum 25.827 -18.206 0.676 31.606 Atomic orbital electron populations 1.70055 1.08201 1.28262 1.52358 1.25975 0.95639 1.03424 0.94023 0.85682 0.79483 0.78358 0.79308 1.19070 1.20717 1.17209 1.21384 0.91532 0.93465 1.50756 0.94406 1.19452 0.94466 0.93645 0.97131 1.21317 0.90138 0.98498 1.02784 1.23207 0.95448 0.78873 1.02296 1.86517 1.23284 1.33249 1.83873 1.21620 0.80763 0.90634 0.72444 1.90833 1.60956 1.43604 1.47451 1.18609 0.90421 0.90679 1.18383 1.21500 1.00295 0.91225 0.92496 1.21481 0.95740 0.96913 1.02863 1.21077 0.92273 0.99194 0.91628 1.21221 0.97718 0.91836 1.08598 1.19827 0.88226 0.89712 0.92581 1.86961 1.18494 1.36941 1.80755 1.24322 0.85444 0.92717 1.01655 1.21890 0.89523 0.96477 1.05489 0.92346 0.95732 0.95845 0.91588 0.91570 0.91428 0.91393 0.83184 0.81086 0.80947 0.89515 0.85267 0.85742 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.10 13.96 21.45 0.30 -59.80 16 2 C 0.01 0.39 5.47 84.66 0.46 0.85 16 3 Si 0.95 45.07 27.47 68.60 1.88 46.96 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 7 C -0.53 -31.29 9.66 25.60 0.25 -31.05 16 8 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 9 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 10 C -0.09 -3.67 5.53 30.60 0.17 -3.50 16 11 C 0.08 2.79 5.48 71.98 0.39 3.18 16 12 O -0.35 -12.44 9.45 -56.67 -0.54 -12.97 16 13 C 0.50 17.74 7.89 70.23 0.55 18.30 16 14 O -0.54 -22.31 15.66 25.16 0.39 -21.91 16 15 C -0.18 -5.06 5.89 -19.94 -0.12 -5.18 16 16 C -0.04 -0.77 9.59 22.48 0.22 -0.56 16 17 C -0.15 -2.02 10.05 22.26 0.22 -1.79 16 18 C -0.02 -0.27 10.02 22.24 0.22 -0.05 16 19 C -0.19 -3.11 6.27 -19.54 -0.12 -3.23 16 20 C 0.14 3.68 6.73 23.02 0.15 3.83 16 21 O -0.32 -8.66 10.13 -76.91 -0.78 -9.44 16 22 C 0.03 0.46 8.01 72.56 0.58 1.04 16 23 C -0.10 -0.90 7.12 30.74 0.22 -0.68 16 24 H 0.27 15.77 8.31 -92.71 -0.77 14.99 16 25 H 0.02 1.15 7.20 -2.39 -0.02 1.13 16 26 H 0.02 1.08 7.57 -2.39 -0.02 1.07 16 27 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 30 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.15 2.99 7.59 -2.91 -0.02 2.96 16 32 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 33 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.12 0.43 8.14 -2.38 -0.02 0.41 16 37 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -78.42 319.05 5.60 -72.82 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: 1.01 Total: 3.52 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 3.33 Total: -19.18 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 0.30 Total: -59.80 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -0.92 Total: -44.32 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.96 kcal Total: -78.42 5.60 -72.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923882847.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.614 kcal (2) G-P(sol) polarization free energy of solvation -78.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds