Wall clock time and date at job start Mon Mar 30 2020 01:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99899 * 2 1 4 4 H 1.48494 * 109.47291 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46965 * 300.00001 * 3 2 1 6 6 H 1.48495 * 109.46936 * 59.99855 * 3 2 1 7 7 C 1.37875 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00355 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99995 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46973 * 180.02562 * 9 7 2 11 11 O 1.45204 * 109.46869 * 179.97438 * 10 9 7 12 12 C 1.34708 * 117.00126 * 179.97438 * 11 10 9 13 13 O 1.21477 * 119.99710 * 0.02562 * 12 11 10 14 14 C 1.47722 * 120.00346 * 179.97438 * 12 11 10 15 15 C 1.39512 * 120.01555 * 0.02562 * 14 12 11 16 16 C 1.37922 * 119.68977 * 180.02562 * 15 14 12 17 17 C 1.38214 * 120.06714 * 0.08190 * 16 15 14 18 18 C 1.38769 * 120.62206 * 359.97438 * 17 16 15 19 19 C 1.37650 * 119.86179 * 359.85382 * 18 17 16 20 20 C 1.51198 * 121.50381 * 180.48198 * 19 18 17 21 21 C 1.52971 * 109.52158 * 343.07969 * 20 19 18 22 22 O 1.43215 * 108.62297 * 49.09435 * 21 20 19 23 23 C 1.42717 * 113.13091 * 289.29926 * 22 21 20 24 24 H 0.96993 * 120.00474 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46816 * 60.00013 * 9 7 2 26 26 H 1.09000 * 109.46981 * 299.99821 * 9 7 2 27 27 H 1.09000 * 109.47140 * 59.99910 * 10 9 7 28 28 H 1.08991 * 109.47038 * 299.99740 * 10 9 7 29 29 H 1.07998 * 120.15719 * 359.97438 * 15 14 12 30 30 H 1.08001 * 119.97072 * 180.02562 * 16 15 14 31 31 H 1.07998 * 119.69297 * 179.97438 * 17 16 15 32 32 H 1.09007 * 109.68330 * 222.97825 * 20 19 18 33 33 H 1.09004 * 109.40916 * 103.01559 * 20 19 18 34 34 H 1.09002 * 109.64098 * 289.29956 * 21 20 19 35 35 H 1.09002 * 109.63932 * 168.88490 * 21 20 19 36 36 H 1.09010 * 109.33278 * 172.02596 * 23 22 21 37 37 H 1.09000 * 109.33329 * 291.68505 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5194 -4.9195 0.0001 12 6 2.2531 -6.0493 -0.0004 13 8 3.4662 -5.9856 -0.0008 14 6 1.5825 -7.3656 0.0008 15 6 0.1894 -7.4390 0.0018 16 6 -0.4297 -8.6715 0.0034 17 6 0.3284 -9.8272 0.0057 18 6 1.7146 -9.7633 0.0059 19 6 2.3442 -8.5392 0.0007 20 6 3.8520 -8.4264 -0.0101 21 6 4.4677 -9.7635 0.4059 22 8 3.8536 -10.8073 -0.3586 23 6 2.4974 -11.0508 0.0129 24 1 -0.4850 0.8399 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6042 0.8894 28 1 2.8720 -3.6043 -0.8905 29 1 -0.4016 -6.5351 0.0022 30 1 -1.5079 -8.7337 0.0038 31 1 -0.1627 -10.7891 0.0074 32 1 4.1670 -7.6498 0.6869 33 1 4.1887 -8.1690 -1.0144 34 1 4.2902 -9.9341 1.4677 35 1 5.5401 -9.7493 0.2114 36 1 2.0494 -11.7494 -0.6939 37 1 2.4692 -11.4821 1.0136 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924314839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:25 Heat of formation + Delta-G solvation = -116.333627 kcal Electronic energy + Delta-G solvation = -20629.950216 eV Core-core repulsion = 17336.880086 eV Total energy + Delta-G solvation = -3293.070130 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.83664 -39.46327 -37.62982 -36.20910 -33.39043 -32.98750 -32.10868 -30.43795 -29.71428 -25.80340 -25.46100 -24.09029 -23.63178 -21.10888 -20.63539 -20.18918 -17.72762 -16.84117 -16.56017 -16.15167 -16.11403 -15.91222 -15.65922 -15.44579 -14.56675 -14.30720 -14.00659 -13.71769 -13.20369 -13.01452 -12.71901 -12.45133 -12.38853 -12.03006 -11.87591 -11.67365 -11.26550 -11.06977 -10.84900 -10.75096 -10.68032 -10.26189 -9.81181 -9.68800 -9.50395 -9.29593 -9.04429 -8.82070 -8.46796 -6.12608 -4.16971 0.63569 1.11830 2.68270 3.09081 3.26249 3.33910 3.39044 3.59468 3.67483 4.37070 4.37748 4.46375 4.67170 4.77555 4.93001 4.99658 5.06950 5.09313 5.24207 5.26787 5.39705 5.53943 5.62176 5.71110 5.73854 6.01476 6.05049 6.06534 6.14113 6.20831 6.37249 6.60491 6.65429 6.85111 6.95669 7.53234 7.59427 7.84262 8.14210 8.22901 8.88746 9.47657 10.98969 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.034893 B = 0.003401 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.261514 B = 8229.994728 C = 8981.144758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.076 3.924 11 O -0.352 6.352 12 C 0.500 3.500 13 O -0.510 6.510 14 C -0.121 4.121 15 C -0.055 4.055 16 C -0.137 4.137 17 C -0.081 4.081 18 C -0.142 4.142 19 C -0.011 4.011 20 C -0.122 4.122 21 C 0.055 3.945 22 O -0.377 6.377 23 C 0.106 3.894 24 H 0.263 0.737 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.144 0.856 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.585 -22.304 1.172 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.004 3.996 11 O -0.268 6.268 12 C 0.345 3.655 13 O -0.402 6.402 14 C -0.122 4.122 15 C -0.073 4.073 16 C -0.155 4.155 17 C -0.099 4.099 18 C -0.142 4.142 19 C -0.011 4.011 20 C -0.158 4.158 21 C -0.021 4.021 22 O -0.296 6.296 23 C 0.029 3.971 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.162 0.838 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.133 0.867 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.885 -22.204 1.025 22.307 hybrid contribution 0.201 1.278 0.175 1.306 sum 2.086 -20.925 1.200 21.063 Atomic orbital electron populations 1.69976 1.06099 1.26909 1.49846 1.24983 0.94920 0.99414 0.94844 0.86414 0.80066 0.83123 0.77713 1.19570 1.20816 1.20817 1.21012 0.93226 0.90070 1.52108 0.92179 1.19182 0.94205 0.89025 0.98889 1.23676 0.96421 0.78469 1.01041 1.86569 1.42014 1.15612 1.82602 1.21088 0.85642 0.85500 0.73244 1.90736 1.14973 1.88073 1.46415 1.19192 0.93929 0.90376 1.08726 1.21608 0.93276 0.99108 0.93324 1.21102 1.00429 0.91928 1.01996 1.21208 0.92701 0.99008 0.96963 1.20156 0.94605 0.95196 1.04238 1.19660 0.96097 0.90846 0.94508 1.21587 0.90191 0.98776 1.05244 1.22800 0.98027 0.86326 0.94984 1.88062 1.24473 1.55510 1.61513 1.21381 0.81763 0.92924 1.00985 0.92746 0.95320 0.95338 0.92206 0.92183 0.83779 0.84914 0.85346 0.86729 0.88991 0.92699 0.88101 0.87708 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -14.76 9.11 -34.44 -0.31 -15.08 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 10 C 0.08 1.70 5.41 37.16 0.20 1.90 16 11 O -0.35 -7.11 9.46 -40.51 -0.38 -7.49 16 12 C 0.50 9.12 7.86 34.61 0.27 9.39 16 13 O -0.51 -9.87 12.96 -19.25 -0.25 -10.12 16 14 C -0.12 -1.83 5.88 -104.92 -0.62 -2.44 16 15 C -0.06 -0.72 9.61 -39.22 -0.38 -1.09 16 16 C -0.14 -1.39 10.03 -39.71 -0.40 -1.79 16 17 C -0.08 -0.75 9.66 -39.39 -0.38 -1.13 16 18 C -0.14 -1.56 5.80 -104.65 -0.61 -2.16 16 19 C -0.01 -0.14 5.82 -103.96 -0.61 -0.75 16 20 C -0.12 -1.57 4.57 -27.65 -0.13 -1.70 16 21 C 0.06 0.57 6.84 37.14 0.25 0.82 16 22 O -0.38 -4.24 10.80 -35.23 -0.38 -4.62 16 23 C 0.11 0.95 6.66 36.00 0.24 1.19 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.14 1.87 7.60 -52.49 -0.40 1.47 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 31 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.11 1.63 6.02 -51.92 -0.31 1.32 16 33 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 34 H 0.05 0.50 8.07 -51.93 -0.42 0.08 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.11 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 314.37 15.07 4.74 4.74 Total: -1.00 -31.50 314.37 -8.16 -39.66 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -4.90 Total: -2.21 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -2.70 Total: -10.74 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.74 Total: -25.54 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -1.01 Total: -22.23 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.50 -8.16 -39.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924314839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.676 kcal (2) G-P(sol) polarization free energy of solvation -31.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds