Wall clock time and date at job start Mon Mar 30 2020 01:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99899 * 2 1 4 4 H 1.48494 * 109.47291 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46965 * 300.00001 * 3 2 1 6 6 H 1.48495 * 109.46936 * 59.99855 * 3 2 1 7 7 C 1.37875 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00355 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99995 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46973 * 180.02562 * 9 7 2 11 11 O 1.45204 * 109.46869 * 179.97438 * 10 9 7 12 12 C 1.34708 * 117.00126 * 179.97438 * 11 10 9 13 13 O 1.21477 * 119.99710 * 0.02562 * 12 11 10 14 14 C 1.47722 * 120.00346 * 179.97438 * 12 11 10 15 15 C 1.39512 * 120.01555 * 0.02562 * 14 12 11 16 16 C 1.37922 * 119.68977 * 180.02562 * 15 14 12 17 17 C 1.38214 * 120.06714 * 0.08190 * 16 15 14 18 18 C 1.38769 * 120.62206 * 359.97438 * 17 16 15 19 19 C 1.37650 * 119.86179 * 359.85382 * 18 17 16 20 20 C 1.51198 * 121.50381 * 180.48198 * 19 18 17 21 21 C 1.52971 * 109.52158 * 343.07969 * 20 19 18 22 22 O 1.43215 * 108.62297 * 49.09435 * 21 20 19 23 23 C 1.42717 * 113.13091 * 289.29926 * 22 21 20 24 24 H 0.96993 * 120.00474 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46816 * 60.00013 * 9 7 2 26 26 H 1.09000 * 109.46981 * 299.99821 * 9 7 2 27 27 H 1.09000 * 109.47140 * 59.99910 * 10 9 7 28 28 H 1.08991 * 109.47038 * 299.99740 * 10 9 7 29 29 H 1.07998 * 120.15719 * 359.97438 * 15 14 12 30 30 H 1.08001 * 119.97072 * 180.02562 * 16 15 14 31 31 H 1.07998 * 119.69297 * 179.97438 * 17 16 15 32 32 H 1.09007 * 109.68330 * 222.97825 * 20 19 18 33 33 H 1.09004 * 109.40916 * 103.01559 * 20 19 18 34 34 H 1.09002 * 109.64098 * 289.29956 * 21 20 19 35 35 H 1.09002 * 109.63932 * 168.88490 * 21 20 19 36 36 H 1.09010 * 109.33278 * 172.02596 * 23 22 21 37 37 H 1.09000 * 109.33329 * 291.68505 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5194 -4.9195 0.0001 12 6 2.2531 -6.0493 -0.0004 13 8 3.4662 -5.9856 -0.0008 14 6 1.5825 -7.3656 0.0008 15 6 0.1894 -7.4390 0.0018 16 6 -0.4297 -8.6715 0.0034 17 6 0.3284 -9.8272 0.0057 18 6 1.7146 -9.7633 0.0059 19 6 2.3442 -8.5392 0.0007 20 6 3.8520 -8.4264 -0.0101 21 6 4.4677 -9.7635 0.4059 22 8 3.8536 -10.8073 -0.3586 23 6 2.4974 -11.0508 0.0129 24 1 -0.4850 0.8399 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6042 0.8894 28 1 2.8720 -3.6043 -0.8905 29 1 -0.4016 -6.5351 0.0022 30 1 -1.5079 -8.7337 0.0038 31 1 -0.1627 -10.7891 0.0074 32 1 4.1670 -7.6498 0.6869 33 1 4.1887 -8.1690 -1.0144 34 1 4.2902 -9.9341 1.4677 35 1 5.5401 -9.7493 0.2114 36 1 2.0494 -11.7494 -0.6939 37 1 2.4692 -11.4821 1.0136 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924314839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:25 Heat of formation + Delta-G solvation = -134.464109 kcal Electronic energy + Delta-G solvation = -20630.736413 eV Core-core repulsion = 17336.880086 eV Total energy + Delta-G solvation = -3293.856326 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.97832 -40.70014 -38.51342 -37.77340 -35.49088 -33.93577 -33.12492 -32.25242 -30.76479 -27.31635 -26.58564 -25.35704 -24.64635 -22.99568 -21.92073 -21.17455 -19.10602 -18.37121 -17.91963 -17.63582 -17.28564 -17.06954 -16.72571 -16.51668 -16.22083 -15.39684 -15.16762 -14.94281 -14.43238 -14.40805 -14.26340 -13.77293 -13.35364 -13.21167 -13.06636 -12.99035 -12.78711 -12.63984 -12.57079 -12.49948 -11.80289 -11.65448 -11.52954 -11.49351 -11.28722 -10.64590 -10.58791 -9.98407 -9.71167 -8.29646 -6.43100 -0.40307 0.21912 1.39405 1.40362 1.43121 1.53279 1.65584 2.38201 2.61974 2.90492 3.04800 3.51841 3.56338 3.64709 3.86460 3.99208 4.17092 4.18131 4.20181 4.29662 4.35706 4.47870 4.54715 4.63815 4.71746 4.75766 4.78097 4.90634 5.02783 5.17254 5.25885 5.33676 5.39323 5.42123 5.54229 5.70507 5.81367 6.03192 6.10190 6.63682 6.70846 7.26849 8.83284 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.034893 B = 0.003401 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.261514 B = 8229.994728 C = 8981.144758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.551 4.551 8 H 0.065 0.935 9 C 0.032 3.968 10 C 0.092 3.908 11 O -0.361 6.361 12 C 0.494 3.506 13 O -0.529 6.529 14 C -0.150 4.150 15 C -0.069 4.069 16 C -0.130 4.130 17 C -0.062 4.062 18 C -0.142 4.142 19 C -0.029 4.029 20 C -0.120 4.120 21 C 0.061 3.939 22 O -0.392 6.392 23 C 0.101 3.899 24 H 0.268 0.732 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.134 0.866 30 H 0.166 0.834 31 H 0.175 0.825 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.114 0.886 36 H 0.132 0.868 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.335 -24.485 1.389 24.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.193 4.193 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.588 4.588 8 H 0.083 0.917 9 C -0.005 4.005 10 C 0.019 3.981 11 O -0.277 6.277 12 C 0.342 3.658 13 O -0.421 6.421 14 C -0.151 4.151 15 C -0.088 4.088 16 C -0.147 4.147 17 C -0.080 4.080 18 C -0.143 4.143 19 C -0.030 4.030 20 C -0.157 4.157 21 C -0.015 4.015 22 O -0.311 6.311 23 C 0.025 3.975 24 H 0.077 0.923 25 H 0.025 0.975 26 H 0.026 0.974 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.152 0.848 30 H 0.183 0.817 31 H 0.192 0.808 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.132 0.868 36 H 0.150 0.850 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.637 -24.410 1.242 24.496 hybrid contribution 0.192 1.809 0.105 1.822 sum 1.830 -22.601 1.346 22.715 Atomic orbital electron populations 1.70093 1.07812 1.28281 1.50343 1.25970 0.95865 1.03435 0.93997 0.85254 0.78864 0.77972 0.78078 1.18656 1.20000 1.19941 1.21389 0.93698 0.91175 1.52574 0.91716 1.18983 0.94311 0.90544 0.96712 1.23195 0.95145 0.78752 1.01011 1.86552 1.42211 1.15639 1.83316 1.21807 0.85688 0.85894 0.72423 1.90721 1.15714 1.88259 1.47438 1.19148 0.94965 0.88824 1.12160 1.21685 0.92390 1.00457 0.94223 1.21485 1.02154 0.90811 1.00257 1.21728 0.91895 1.00613 0.93724 1.20543 0.95802 0.94920 1.03002 1.19846 0.96173 0.91449 0.95518 1.21480 0.90644 0.99980 1.03590 1.22788 0.98508 0.84637 0.95585 1.88044 1.25736 1.55243 1.62056 1.21714 0.80491 0.92092 1.03187 0.92273 0.97513 0.97441 0.92091 0.92233 0.84788 0.81690 0.80750 0.88831 0.90918 0.91295 0.86837 0.85011 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.74 13.29 21.45 0.28 -55.45 16 2 C 0.01 0.36 5.46 84.65 0.46 0.83 16 3 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.55 -31.67 9.11 25.60 0.23 -31.43 16 8 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.03 1.74 5.35 29.85 0.16 1.90 16 10 C 0.09 4.30 5.41 71.98 0.39 4.69 16 11 O -0.36 -15.45 9.46 -56.17 -0.53 -15.98 16 12 C 0.49 19.09 7.86 70.33 0.55 19.64 16 13 O -0.53 -21.71 12.96 19.91 0.26 -21.45 16 14 C -0.15 -4.65 5.88 -20.06 -0.12 -4.76 16 15 C -0.07 -1.79 9.61 22.50 0.22 -1.58 16 16 C -0.13 -2.25 10.03 22.19 0.22 -2.03 16 17 C -0.06 -0.89 9.66 22.39 0.22 -0.67 16 18 C -0.14 -2.73 5.80 -19.88 -0.12 -2.84 16 19 C -0.03 -0.79 5.82 -19.44 -0.11 -0.90 16 20 C -0.12 -3.19 4.57 30.00 0.14 -3.05 16 21 C 0.06 1.19 6.84 71.97 0.49 1.68 16 22 O -0.39 -7.88 10.80 -148.98 -1.61 -9.49 16 23 C 0.10 1.43 6.66 71.23 0.47 1.90 16 24 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 25 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.13 3.63 7.60 -2.91 -0.02 3.60 16 30 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 31 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 32 H 0.09 2.84 6.02 -2.38 -0.01 2.82 16 33 H 0.07 2.14 8.10 -2.39 -0.02 2.12 16 34 H 0.07 1.14 8.07 -2.39 -0.02 1.12 16 35 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -70.65 314.37 4.71 -65.94 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 1.07 Total: 7.10 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 3.21 Total: -16.63 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.28 Total: -55.45 kcal Atomic # 8 Polarization: -45.03 SS G_CDS: -1.88 Total: -46.92 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -70.65 4.71 -65.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924314839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.525 kcal (2) G-P(sol) polarization free energy of solvation -70.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds