Wall clock time and date at job start Mon Mar 30 2020 02:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47392 * 2 1 4 4 C 1.53003 * 109.46728 * 119.99881 * 2 1 3 5 5 C 1.50703 * 109.46714 * 294.99671 * 4 2 1 6 6 H 1.07995 * 120.00565 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99666 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00033 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99959 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47392 * 59.99802 * 9 7 5 11 11 H 1.48499 * 109.47290 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47360 * 300.00027 * 9 7 5 13 13 N 1.46497 * 109.47058 * 239.99245 * 2 1 3 14 14 N 1.28723 * 125.34400 * 300.02769 * 13 2 1 15 15 N 1.28984 * 108.94564 * 179.97438 * 14 13 2 16 16 C 1.34049 * 107.26777 * 359.97438 * 15 14 13 17 17 C 1.48457 * 126.67400 * 179.97438 * 16 15 14 18 18 C 1.39311 * 120.09168 * 179.75054 * 17 16 15 19 19 C 1.37980 * 119.91154 * 179.81109 * 18 17 16 20 20 C 1.38552 * 120.08556 * 0.44206 * 19 18 17 21 21 F 1.35100 * 119.90385 * 179.76412 * 20 19 18 22 22 C 1.38541 * 120.18710 * 359.79169 * 20 19 18 23 23 C 1.37983 * 120.09292 * 359.97438 * 22 20 19 24 24 N 1.28874 * 125.33525 * 119.98821 * 13 2 1 25 25 H 1.09004 * 109.47067 * 300.00855 * 1 2 3 26 26 H 1.09003 * 109.46581 * 60.00032 * 1 2 3 27 27 H 1.08993 * 109.47386 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47576 * 54.99687 * 4 2 1 29 29 H 1.08998 * 109.47475 * 175.00123 * 4 2 1 30 30 H 0.97000 * 119.99845 * 180.02562 * 8 7 5 31 31 H 1.08008 * 120.04537 * 359.97438 * 18 17 16 32 32 H 1.07997 * 119.96229 * 180.20790 * 19 18 17 33 33 H 1.07995 * 119.95627 * 179.97438 * 22 20 19 34 34 H 1.07993 * 120.04722 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0799 0.9743 2.3757 7 6 1.9921 -0.4021 3.7284 8 7 2.6752 -1.5192 3.8513 9 14 1.4974 0.5624 5.2497 10 1 0.0174 0.6691 5.3086 11 1 1.9923 -0.1375 6.4622 12 1 2.0895 1.9229 5.1876 13 7 2.0183 -0.6908 -1.1961 14 7 1.7711 -1.9167 -1.5010 15 7 2.3549 -2.1966 -2.6166 16 6 2.9933 -1.0892 -3.0204 17 6 3.8041 -0.9332 -4.2542 18 6 4.4068 0.2889 -4.5441 19 6 5.1628 0.4286 -5.6899 20 6 5.3153 -0.6418 -6.5562 21 9 6.0524 -0.4995 -7.6794 22 6 4.7137 -1.8575 -6.2741 23 6 3.9600 -2.0070 -5.1280 24 7 2.7622 -0.1661 -2.1083 25 1 -0.3633 0.5140 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6053 -1.7198 1.2953 29 1 3.1262 -0.7995 1.2058 30 1 2.9218 -1.8424 4.7320 31 1 4.2846 1.1251 -3.8715 32 1 5.6332 1.3747 -5.9137 33 1 4.8347 -2.6893 -6.9522 34 1 3.4917 -2.9551 -4.9087 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117940188.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:12 Heat of formation + Delta-G solvation = 92.161489 kcal Electronic energy + Delta-G solvation = -19909.816310 eV Core-core repulsion = 16566.912404 eV Total energy + Delta-G solvation = -3342.903906 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.11095 -43.87088 -39.11029 -36.24069 -33.33613 -33.09015 -31.82150 -31.35388 -29.62810 -27.37130 -25.09715 -24.21703 -23.51312 -22.64965 -21.55151 -20.22527 -17.93029 -17.16467 -16.84292 -16.67868 -16.30396 -15.79086 -15.68444 -14.71150 -14.49038 -13.80373 -13.75615 -13.58445 -13.22054 -13.06248 -12.71053 -12.55818 -12.30593 -11.94632 -11.60711 -11.25952 -11.18641 -11.07621 -10.90210 -10.60754 -10.60154 -10.49281 -10.32109 -9.65069 -9.51837 -9.34958 -8.59880 -8.51729 -6.23506 -4.30537 0.60096 1.03130 1.75240 2.43119 2.52140 3.20861 3.26880 3.27699 3.56000 3.88773 4.02989 4.27305 4.39634 4.65060 4.72397 5.06190 5.11222 5.15793 5.38853 5.43013 5.50736 5.68993 5.73273 5.80277 5.89245 6.01642 6.09610 6.13713 6.28972 6.31257 6.56574 6.61702 6.69816 7.26187 7.35650 7.69222 8.00115 8.72769 8.76729 9.35059 10.87550 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.037944 B = 0.003210 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.748556 B = 8720.683250 C = 8871.261336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.148 3.852 3 H 0.114 0.886 4 C 0.021 3.979 5 C -0.529 4.529 6 H 0.064 0.936 7 C 0.064 3.936 8 N -0.886 5.886 9 Si 0.901 3.099 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.106 5.106 14 N -0.049 5.049 15 N -0.292 5.292 16 C 0.181 3.819 17 C -0.006 4.006 18 C -0.057 4.057 19 C -0.155 4.155 20 C 0.105 3.895 21 F -0.140 7.140 22 C -0.155 4.155 23 C -0.054 4.054 24 N -0.303 5.303 25 H 0.099 0.901 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.025 0.975 30 H 0.266 0.734 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.955 2.994 -16.955 17.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.050 3.950 3 H 0.132 0.868 4 C -0.017 4.017 5 C -0.568 4.568 6 H 0.082 0.918 7 C -0.140 4.140 8 N -0.523 5.523 9 Si 0.728 3.272 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.020 5.020 14 N -0.041 5.041 15 N -0.163 5.163 16 C -0.098 4.098 17 C -0.009 4.009 18 C -0.077 4.077 19 C -0.174 4.174 20 C 0.085 3.915 21 F -0.118 7.118 22 C -0.174 4.174 23 C -0.074 4.074 24 N -0.154 5.154 25 H 0.118 0.882 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.630 2.581 -16.326 16.609 hybrid contribution 0.300 0.727 0.448 0.905 sum 1.930 3.308 -15.877 16.333 Atomic orbital electron populations 1.22100 0.92052 1.03814 1.02742 1.22718 0.96045 0.97220 0.79015 0.86818 1.19530 0.97315 0.96877 0.87994 1.20865 1.37089 1.08948 0.89901 0.91779 1.24996 0.94655 0.94997 0.99318 1.69958 1.37370 1.20695 1.24298 0.86517 0.79033 0.79937 0.81745 1.19928 1.21109 1.20009 1.50925 1.27495 1.06666 1.16892 1.78889 1.17422 0.99380 1.08431 1.75960 1.11347 1.23729 1.05222 1.23382 1.01925 0.87644 0.96882 1.17320 0.98094 0.94867 0.90623 1.21094 0.93877 0.96879 0.95836 1.21054 1.02250 0.98981 0.95092 1.17856 0.94274 0.95163 0.84172 1.91503 1.74665 1.96391 1.49260 1.21057 1.00222 0.96862 0.99231 1.21079 0.95743 0.98849 0.91715 1.74799 1.13369 1.26907 1.00362 0.88195 0.93592 0.91161 0.94253 0.95667 0.92420 0.83832 0.84142 0.84103 0.83614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.19 37.16 0.34 -2.13 16 2 C 0.15 2.84 3.26 -67.93 -0.22 2.62 16 3 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 4 C 0.02 0.51 4.63 -27.88 -0.13 0.38 16 5 C -0.53 -13.36 8.41 -34.44 -0.29 -13.65 16 6 H 0.06 1.50 7.05 -52.49 -0.37 1.13 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 9 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 13 N -0.11 -2.07 3.73 -4.91 -0.02 -2.08 16 14 N -0.05 -1.00 12.92 60.35 0.78 -0.22 16 15 N -0.29 -5.52 12.23 32.15 0.39 -5.12 16 16 C 0.18 3.12 7.94 -156.30 -1.24 1.88 16 17 C -0.01 -0.08 5.88 -104.88 -0.62 -0.69 16 18 C -0.06 -0.66 9.70 -39.28 -0.38 -1.04 16 19 C -0.15 -1.54 10.01 -39.56 -0.40 -1.94 16 20 C 0.11 1.09 7.30 -39.35 -0.29 0.80 16 21 F -0.14 -1.48 17.26 2.25 0.04 -1.44 16 22 C -0.15 -1.52 10.01 -39.56 -0.40 -1.92 16 23 C -0.05 -0.62 9.70 -39.27 -0.38 -1.00 16 24 N -0.30 -5.58 11.85 32.17 0.38 -5.20 16 25 H 0.10 1.63 6.95 -51.93 -0.36 1.27 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.14 1.59 7.88 -52.48 -0.41 1.18 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.15 1.59 7.88 -52.49 -0.41 1.18 16 LS Contribution 308.52 15.07 4.65 4.65 Total: -1.00 -28.90 308.52 -5.81 -34.70 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -3.65 Total: -0.81 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -4.09 Total: -15.09 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 2.27 Total: -37.07 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.90 -5.81 -34.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117940188.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.865 kcal (2) G-P(sol) polarization free energy of solvation -28.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds