Wall clock time and date at job start Mon Mar 30 2020 02:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47392 * 2 1 4 4 C 1.53003 * 109.46728 * 119.99881 * 2 1 3 5 5 C 1.50703 * 109.46714 * 294.99671 * 4 2 1 6 6 H 1.07995 * 120.00565 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99666 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00033 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99959 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47392 * 59.99802 * 9 7 5 11 11 H 1.48499 * 109.47290 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47360 * 300.00027 * 9 7 5 13 13 N 1.46497 * 109.47058 * 239.99245 * 2 1 3 14 14 N 1.28723 * 125.34400 * 300.02769 * 13 2 1 15 15 N 1.28984 * 108.94564 * 179.97438 * 14 13 2 16 16 C 1.34049 * 107.26777 * 359.97438 * 15 14 13 17 17 C 1.48457 * 126.67400 * 179.97438 * 16 15 14 18 18 C 1.39311 * 120.09168 * 179.75054 * 17 16 15 19 19 C 1.37980 * 119.91154 * 179.81109 * 18 17 16 20 20 C 1.38552 * 120.08556 * 0.44206 * 19 18 17 21 21 F 1.35100 * 119.90385 * 179.76412 * 20 19 18 22 22 C 1.38541 * 120.18710 * 359.79169 * 20 19 18 23 23 C 1.37983 * 120.09292 * 359.97438 * 22 20 19 24 24 N 1.28874 * 125.33525 * 119.98821 * 13 2 1 25 25 H 1.09004 * 109.47067 * 300.00855 * 1 2 3 26 26 H 1.09003 * 109.46581 * 60.00032 * 1 2 3 27 27 H 1.08993 * 109.47386 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47576 * 54.99687 * 4 2 1 29 29 H 1.08998 * 109.47475 * 175.00123 * 4 2 1 30 30 H 0.97000 * 119.99845 * 180.02562 * 8 7 5 31 31 H 1.08008 * 120.04537 * 359.97438 * 18 17 16 32 32 H 1.07997 * 119.96229 * 180.20790 * 19 18 17 33 33 H 1.07995 * 119.95627 * 179.97438 * 22 20 19 34 34 H 1.07993 * 120.04722 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0799 0.9743 2.3757 7 6 1.9921 -0.4021 3.7284 8 7 2.6752 -1.5192 3.8513 9 14 1.4974 0.5624 5.2497 10 1 0.0174 0.6691 5.3086 11 1 1.9923 -0.1375 6.4622 12 1 2.0895 1.9229 5.1876 13 7 2.0183 -0.6908 -1.1961 14 7 1.7711 -1.9167 -1.5010 15 7 2.3549 -2.1966 -2.6166 16 6 2.9933 -1.0892 -3.0204 17 6 3.8041 -0.9332 -4.2542 18 6 4.4068 0.2889 -4.5441 19 6 5.1628 0.4286 -5.6899 20 6 5.3153 -0.6418 -6.5562 21 9 6.0524 -0.4995 -7.6794 22 6 4.7137 -1.8575 -6.2741 23 6 3.9600 -2.0070 -5.1280 24 7 2.7622 -0.1661 -2.1083 25 1 -0.3633 0.5140 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6053 -1.7198 1.2953 29 1 3.1262 -0.7995 1.2058 30 1 2.9218 -1.8424 4.7320 31 1 4.2846 1.1251 -3.8715 32 1 5.6332 1.3747 -5.9137 33 1 4.8347 -2.6893 -6.9522 34 1 3.4917 -2.9551 -4.9087 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117940188.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:12 Heat of formation + Delta-G solvation = 76.167865 kcal Electronic energy + Delta-G solvation = -19910.509845 eV Core-core repulsion = 16566.912404 eV Total energy + Delta-G solvation = -3343.597442 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.94629 -45.32614 -40.01586 -37.82226 -35.09115 -34.51253 -33.33178 -32.22278 -30.82798 -29.13678 -26.62163 -25.44809 -25.01856 -23.81735 -22.68885 -21.73893 -18.93649 -18.77886 -18.26151 -18.03176 -17.35459 -17.06145 -16.62195 -16.55277 -15.46101 -15.34774 -14.86513 -14.57291 -14.56948 -14.28112 -14.09208 -13.76674 -13.67300 -13.39530 -13.08834 -12.91867 -12.71412 -12.48177 -12.29475 -12.24273 -12.05282 -11.89835 -11.87347 -11.46182 -11.25286 -10.62081 -10.17637 -9.55561 -8.25687 -6.39235 -0.39872 0.20301 0.26078 0.96490 1.28313 1.45952 1.47666 1.55448 2.40385 2.60706 2.66781 3.10212 3.17101 3.19157 3.71665 3.86956 3.89203 3.92828 4.17761 4.20398 4.32256 4.38517 4.61108 4.69002 4.80914 4.86821 4.92776 5.04537 5.06988 5.17786 5.18203 5.31016 5.36878 5.42622 5.70813 5.76977 6.00691 6.74265 7.29628 7.31968 8.86889 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.037944 B = 0.003210 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.748556 B = 8720.683250 C = 8871.261336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.155 3.845 3 H 0.129 0.871 4 C 0.032 3.968 5 C -0.534 4.534 6 H 0.086 0.914 7 C 0.004 3.996 8 N -0.933 5.933 9 Si 0.972 3.028 10 H -0.260 1.260 11 H -0.291 1.291 12 H -0.264 1.264 13 N -0.113 5.113 14 N -0.074 5.074 15 N -0.303 5.303 16 C 0.190 3.810 17 C -0.036 4.036 18 C -0.056 4.056 19 C -0.147 4.147 20 C 0.108 3.892 21 F -0.138 7.138 22 C -0.146 4.146 23 C -0.054 4.054 24 N -0.312 5.312 25 H 0.107 0.893 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.008 0.992 29 H -0.013 1.013 30 H 0.265 0.735 31 H 0.146 0.854 32 H 0.167 0.833 33 H 0.167 0.833 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.805 4.697 -18.291 18.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.057 3.943 3 H 0.147 0.853 4 C -0.007 4.007 5 C -0.572 4.572 6 H 0.104 0.896 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.796 3.204 10 H -0.184 1.184 11 H -0.217 1.217 12 H -0.188 1.188 13 N -0.027 5.027 14 N -0.066 5.066 15 N -0.173 5.173 16 C -0.089 4.089 17 C -0.039 4.039 18 C -0.076 4.076 19 C -0.166 4.166 20 C 0.088 3.912 21 F -0.116 7.116 22 C -0.165 4.165 23 C -0.074 4.074 24 N -0.163 5.163 25 H 0.125 0.875 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.027 0.973 29 H 0.005 0.995 30 H 0.074 0.926 31 H 0.164 0.836 32 H 0.184 0.816 33 H 0.185 0.815 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.468 4.296 -17.683 18.256 hybrid contribution 0.456 0.167 0.687 0.841 sum 1.924 4.463 -16.996 17.677 Atomic orbital electron populations 1.22048 0.89812 1.03656 1.04325 1.22539 0.97698 0.96844 0.77223 0.85285 1.19260 0.94708 0.96015 0.90679 1.21352 1.36271 1.09395 0.90199 0.89557 1.25999 0.94631 0.95869 1.02996 1.70122 1.39340 1.22891 1.24906 0.85389 0.79295 0.78531 0.77207 1.18432 1.21716 1.18825 1.50873 1.28021 1.06576 1.17234 1.78863 1.18504 0.99985 1.09295 1.75923 1.11919 1.24437 1.05023 1.24054 1.00885 0.86593 0.97362 1.17493 0.99610 0.96657 0.90162 1.21144 0.93824 0.96187 0.96476 1.21267 1.01298 1.00012 0.94008 1.18002 0.93782 0.95394 0.84041 1.91516 1.74564 1.96387 1.49175 1.21271 0.98924 0.97601 0.98699 1.21135 0.95942 0.98395 0.91904 1.74784 1.13611 1.27279 1.00616 0.87496 0.90953 0.92220 0.97314 0.99495 0.92627 0.83615 0.81595 0.81498 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 9.19 71.98 0.66 -3.86 16 2 C 0.15 5.96 3.26 44.99 0.15 6.10 16 3 H 0.13 4.54 8.14 -2.39 -0.02 4.52 16 4 C 0.03 1.59 4.63 29.85 0.14 1.73 16 5 C -0.53 -26.98 8.41 25.60 0.22 -26.77 16 6 H 0.09 3.89 7.05 -2.91 -0.02 3.87 16 7 C 0.00 0.21 5.46 84.66 0.46 0.67 16 8 N -0.93 -54.68 13.29 21.45 0.28 -54.39 16 9 Si 0.97 40.92 29.54 68.60 2.03 42.95 16 10 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 11 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 12 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 13 N -0.11 -4.47 3.73 -169.45 -0.63 -5.10 16 14 N -0.07 -3.10 12.92 37.02 0.48 -2.62 16 15 N -0.30 -11.64 12.23 -52.18 -0.64 -12.27 16 16 C 0.19 6.57 7.94 137.38 1.09 7.66 16 17 C -0.04 -0.94 5.88 -20.03 -0.12 -1.06 16 18 C -0.06 -1.22 9.70 22.47 0.22 -1.00 16 19 C -0.15 -2.54 10.01 22.28 0.22 -2.32 16 20 C 0.11 1.93 7.30 22.42 0.16 2.09 16 21 F -0.14 -2.50 17.26 44.97 0.78 -1.73 16 22 C -0.15 -2.51 10.01 22.28 0.22 -2.29 16 23 C -0.05 -1.16 9.70 22.47 0.22 -0.94 16 24 N -0.31 -11.51 11.85 -52.13 -0.62 -12.13 16 25 H 0.11 3.29 6.95 -2.38 -0.02 3.27 16 26 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 29 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 30 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 31 H 0.15 3.05 7.88 -2.91 -0.02 3.03 16 32 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 34 H 0.15 3.10 7.88 -2.91 -0.02 3.08 16 Total: -1.00 -63.62 308.52 6.44 -57.18 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 1.12 Total: 8.09 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: 3.64 Total: -19.98 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -1.12 Total: -86.52 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.78 Total: -1.73 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Total: -63.62 6.44 -57.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117940188.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.348 kcal (2) G-P(sol) polarization free energy of solvation -63.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds