Wall clock time and date at job start Mon Mar 30 2020 01:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40320 * 126.68917 * 2 1 4 4 N 1.28750 * 109.34564 * 179.97438 * 3 2 1 5 5 C 1.34392 * 110.12408 * 359.73102 * 4 3 2 6 6 C 1.36706 * 126.68749 * 179.97438 * 2 1 3 7 7 N 1.33030 * 134.78288 * 0.04165 * 6 2 1 8 8 C 1.31560 * 120.66313 * 179.97438 * 7 6 2 9 9 N 1.32090 * 122.46066 * 359.97438 * 8 7 6 10 10 C 1.32788 * 121.27071 * 0.02562 * 9 8 7 11 11 N 1.38187 * 120.76050 * 180.02562 * 10 9 8 12 12 C 1.47958 * 111.00190 * 359.97438 * 11 10 9 13 13 C 1.53927 * 86.18328 * 222.42148 * 12 11 10 14 14 O 1.42908 * 113.73409 * 269.25739 * 13 12 11 15 15 C 1.50696 * 113.73938 * 138.07856 * 13 12 11 16 16 H 1.08004 * 119.99656 * 5.17075 * 15 13 12 17 17 C 1.37877 * 120.00407 * 184.89337 * 15 13 12 18 18 N 1.31516 * 119.99824 * 7.08196 * 17 15 13 19 19 Si 1.86796 * 120.00096 * 187.07856 * 17 15 13 20 20 H 1.48496 * 109.47354 * 94.89655 * 19 17 15 21 21 H 1.48505 * 109.47498 * 214.90074 * 19 17 15 22 22 H 1.48506 * 109.47221 * 334.89879 * 19 17 15 23 23 C 1.47958 * 110.99904 * 260.63745 * 11 10 9 24 24 H 1.09004 * 109.47484 * 270.00123 * 1 2 3 25 25 H 1.09003 * 109.47411 * 30.00842 * 1 2 3 26 26 H 1.09004 * 109.47006 * 150.00704 * 1 2 3 27 27 H 1.07997 * 118.77022 * 179.97438 * 8 7 6 28 28 H 1.08994 * 113.75964 * 108.10022 * 12 11 10 29 29 H 1.09004 * 113.75648 * 336.73863 * 12 11 10 30 30 H 0.96698 * 114.00093 * 162.47043 * 14 13 12 31 31 H 0.96999 * 119.99445 * 180.02562 * 18 17 15 32 32 H 1.09005 * 113.75980 * 23.26799 * 23 11 10 33 33 H 1.09002 * 113.76320 * 251.90289 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3033 1.1252 0.0000 4 7 3.5323 0.7414 0.0005 5 6 3.5975 -0.6009 0.0068 6 6 2.2817 -1.0963 0.0005 7 7 2.0844 -2.4118 0.0004 8 6 3.1040 -3.2432 0.0005 9 7 4.3578 -2.8274 0.0002 10 6 4.6548 -1.5332 0.0003 11 7 5.9702 -1.1099 -0.0006 12 6 6.8981 -2.2624 -0.0009 13 6 7.7175 -1.4714 1.0345 14 8 8.7218 -0.6352 0.4561 15 6 8.2382 -2.3154 2.1692 16 1 8.0949 -3.3858 2.1558 17 6 8.9026 -1.7219 3.2215 18 7 8.9611 -0.4109 3.3067 19 14 9.7195 -2.7801 4.5263 20 1 11.1529 -2.9665 4.1863 21 1 9.6069 -2.1117 5.8476 22 1 9.0479 -4.1034 4.5822 23 6 6.4071 -0.7339 1.3621 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8899 -0.5140 26 1 -0.3633 -0.8901 -0.5137 27 1 2.9086 -4.3054 0.0008 28 1 7.4143 -2.4103 -0.9494 29 1 6.4598 -3.1792 0.3936 30 1 9.0530 0.0511 1.0513 31 1 9.4288 0.0066 4.0469 32 1 5.8253 -1.2038 2.1552 33 1 6.5309 0.3398 1.5030 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118593309.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:37 Heat of formation + Delta-G solvation = 147.736705 kcal Electronic energy + Delta-G solvation = -21233.562495 eV Core-core repulsion = 17912.988473 eV Total energy + Delta-G solvation = -3320.574022 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.48484 -40.16765 -38.61409 -35.21058 -34.28838 -32.50411 -32.24655 -30.97662 -28.05528 -27.62120 -25.57442 -25.31513 -24.04794 -23.15739 -20.90189 -19.18879 -18.59642 -18.05289 -17.55383 -16.56510 -16.39551 -15.26952 -15.01177 -14.91718 -14.57452 -14.19065 -13.72719 -13.37829 -13.20765 -12.99929 -12.43941 -12.32072 -12.08987 -11.89795 -11.51522 -11.28315 -11.01249 -10.94579 -10.81022 -10.44984 -10.27326 -9.60021 -9.51296 -9.28435 -9.23274 -8.72758 -8.56628 -8.00964 -6.32240 -4.39751 0.25467 1.14196 1.78388 2.13713 3.19331 3.27515 3.29978 3.62100 3.77616 3.79389 4.03064 4.24463 4.27499 4.58440 4.74815 4.89277 4.92021 5.15322 5.29357 5.48720 5.66642 5.81550 5.91668 6.11490 6.18341 6.29506 6.57765 6.59158 6.76030 7.03783 7.13675 7.54849 7.68804 7.85630 7.95227 8.12456 8.62346 9.28489 9.33829 10.75538 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.027388 B = 0.004977 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.086034 B = 5624.906186 C = 5811.914353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.389 5.389 3 N -0.015 5.015 4 N -0.163 5.163 5 C -0.121 4.121 6 C 0.315 3.685 7 N -0.555 5.555 8 C 0.373 3.627 9 N -0.569 5.569 10 C 0.451 3.549 11 N -0.433 5.433 12 C 0.023 3.977 13 C 0.246 3.754 14 O -0.563 6.563 15 C -0.538 4.538 16 H 0.070 0.930 17 C 0.075 3.925 18 N -0.891 5.891 19 Si 0.902 3.098 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.271 1.271 23 C 0.021 3.979 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.210 0.790 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.384 0.616 31 H 0.270 0.730 32 H 0.072 0.928 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.970 -2.245 -4.153 14.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.185 5.185 3 N 0.004 4.996 4 N -0.042 5.042 5 C -0.255 4.255 6 C 0.064 3.936 7 N -0.281 5.281 8 C 0.080 3.920 9 N -0.293 5.293 10 C 0.198 3.802 11 N -0.151 5.151 12 C -0.103 4.103 13 C 0.205 3.795 14 O -0.371 6.371 15 C -0.576 4.576 16 H 0.089 0.911 17 C -0.129 4.129 18 N -0.529 5.529 19 Si 0.729 3.271 20 H -0.203 1.203 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.104 4.104 24 H 0.100 0.900 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.226 0.774 28 H 0.103 0.897 29 H 0.125 0.875 30 H 0.234 0.766 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.269 -1.325 -5.074 15.202 hybrid contribution 0.059 -0.737 1.672 1.828 sum -14.209 -2.062 -3.402 14.756 Atomic orbital electron populations 1.21994 0.72352 1.05125 1.04130 1.49945 1.08032 1.02496 1.57994 1.81905 0.93829 1.05762 1.18097 1.74493 1.10905 1.10190 1.08661 1.20611 0.94702 0.91921 1.18228 1.19428 0.88805 0.89273 0.96049 1.67525 1.37341 0.99076 1.24109 1.24914 0.81762 0.99723 0.85578 1.68692 1.22967 1.14613 1.23068 1.20720 0.92698 0.85874 0.80864 1.65652 0.96809 1.25920 1.26715 1.24345 0.91200 0.93324 1.01474 1.19816 0.83788 0.86850 0.89065 1.86126 1.57466 1.49300 1.44237 1.21498 1.37617 0.94424 1.04018 0.91142 1.25047 0.94904 0.95153 0.97746 1.69694 1.41924 1.08763 1.32556 0.86419 0.80008 0.80425 0.80235 1.20256 1.21112 1.19596 1.25020 0.99096 1.03158 0.83124 0.90040 0.88545 0.88675 0.77380 0.89695 0.87478 0.76560 0.92014 0.90998 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.89 11.54 59.84 0.69 1.58 16 2 N -0.39 -5.59 4.09 -67.27 -0.28 -5.86 16 3 N -0.01 -0.25 13.73 60.35 0.83 0.58 16 4 N -0.16 -3.15 12.36 32.18 0.40 -2.75 16 5 C -0.12 -2.31 7.21 -84.83 -0.61 -2.92 16 6 C 0.31 5.20 8.11 -156.12 -1.27 3.93 16 7 N -0.56 -8.25 10.47 -13.98 -0.15 -8.40 16 8 C 0.37 5.19 12.25 -92.10 -1.13 4.07 16 9 N -0.57 -9.79 8.35 -13.58 -0.11 -9.90 16 10 C 0.45 8.80 5.93 -154.78 -0.92 7.88 16 11 N -0.43 -9.25 6.26 -176.22 -1.10 -10.35 16 12 C 0.02 0.50 7.05 -2.77 -0.02 0.48 16 13 C 0.25 5.96 1.25 -90.86 -0.11 5.84 16 14 O -0.56 -14.27 13.39 -35.23 -0.47 -14.75 16 15 C -0.54 -13.79 8.59 -34.44 -0.30 -14.09 16 16 H 0.07 1.78 7.82 -52.48 -0.41 1.37 16 17 C 0.08 1.92 5.38 -17.82 -0.10 1.83 16 18 N -0.89 -23.15 11.76 55.43 0.65 -22.49 16 19 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 21 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 C 0.02 0.48 7.25 -2.79 -0.02 0.46 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.21 1.89 8.06 -52.49 -0.42 1.46 16 28 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 29 H 0.11 2.19 6.66 -51.93 -0.35 1.84 16 30 H 0.38 9.69 7.45 45.56 0.34 10.03 16 31 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.07 1.67 7.85 -51.93 -0.41 1.26 16 33 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 292.69 15.07 4.41 4.41 Total: -1.00 -29.62 292.69 -7.12 -36.74 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -2.50 Total: 8.80 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: -3.78 Total: 9.05 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: 0.24 Total: -59.19 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.47 Total: -14.75 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.62 -7.12 -36.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118593309.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.474 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds